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When running the estimate_shift_configuration function with multiple cores the profiles element in the output, where the different configurations and their scores should be, comes back empty. This doesn't happen when using a single core. Below is an example of how I'm getting this issue with example data:
library(l1ou)
data(lizard.tree, lizard.traits)
lizard<- adjust_data(lizard.tree, lizard.traits[,1])
# the new tree is normalized: each tip at distance 1 from the root.# new Y: matrix of size 100 x 1 eModel<- estimate_shift_configuration(lizard$tree, lizard$Y)
# Starting first LASSO (alpha=0) to find a list of candidate configurations.# Starting second LASSO (alpha= 0.61 ) for another list of candidates.
str(eModel$profile)
# List of 2# $ scores : num [1:2399] 16.8 18.3 18.7 19.3 19.9 ...# $ configurations:List of 2399# ..$ : num [1:8] 14 32 55 74 77 98 118 164# ..$ : num [1:7] 14 32 55 77 98 118 164# ..$ : num [1:6] 14 32 77 98 118 164# ..$ : num [1:9] 14 32 37 55 74 77 98 118 164# [etc...]
Now multithreaded, produces an empty profile
eModel_mc<- estimate_shift_configuration(lizard$tree, lizard$Y, nCores=4)
str(eModel_mc$profile)
# List of 2# $ scores : num(0)# $ configurations: list()
I'm running R v. 4.22 and l1ou v. 1.43.
Thanks!
The text was updated successfully, but these errors were encountered:
Hello!
When running the
estimate_shift_configuration
function with multiple cores the profiles element in the output, where the different configurations and their scores should be, comes back empty. This doesn't happen when using a single core. Below is an example of how I'm getting this issue with example data:Now multithreaded, produces an empty profile
I'm running R v. 4.22 and l1ou v. 1.43.
Thanks!
The text was updated successfully, but these errors were encountered: