ci.yml

name: Python package

on: [pull_request]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]

    steps:
    - name: Checkout code
      # uses: actions/checkout@v2
      uses: nschloe/action-cached-lfs-checkout@v1
    # Cache for LFS to limit usage of GitHub LFS monthly bandwidth
    # See <https://github.com/actions/checkout/issues/165>
    - name: Create LFS file list
      run: git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id
    - name: Restore LFS cache
      uses: actions/cache@v2
      id: lfs-cache
      with:
        path: .git/lfs
        key: ${{ runner.os }}-lfs-${{ hashFiles('.lfs-assets-id') }}-v1
    - name: Git LFS Pull
      run: git lfs pull
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install system dependencies
      run: |
        sudo apt update
        sudo apt install -y libhdf5-dev libnetcdf-dev retry --option="APT::Acquire::Retries=3"
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install .[full]
    - name: Test with pytest
      run: |
        pip install pytest
        pip install coverage
        coverage run -m pytest
    - name: Submit coverage
      if: ${{ matrix.python-version == '3.8' }}
      run: |
        pip install codecov
        codecov --token=${{ secrets.CODECOV_TOKEN }}