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complete_datastore
inorganic_nutrients.csv
Data is about a: 'marine water body'
| column | post compositional annotation: |
|---|---|
| Event | 'centrally registered identifier' and 'is about' some ('observing process' or 'specimen collection process') |
| Date Time | temporal instant |
| Latitude | latitude coordinate measurement datum |
| Longitude | longitude coordinate measurement datum |
| Elevation | (elevation or depth) and ('inheres in' some 'marine water body') |
| Water Depth | (elevation or depth) and ('inheres in' some 'marine water body') |
| Nitrate | 'concentration of'](http://purl.obolibrary.org/obo/PATO_0000033) and ('inheres in' some (nitrate and ('part of' some 'sea water'))) |
| Nitrite | 'concentration of' and ('inheres in' some (nitrite and ('part of' some 'sea water'))) |
| Silicate | 'concentration of' and ('inheres in' some ('silicate(4-)' and ('part of' some 'sea water'))) |
| Phosphate | 'concentration of' and ('inheres in' some (phosphate and ('part of' some 'sea water'))) |
| Ammonium | 'concentration of' and ('inheres in' some (ammonium and ('part of' some 'sea water'))) |
physical_oceanography.csv
Data is about a: 'marine current'
| column | post compositional annotation: |
|---|---|
| Date Time | temporal instant |
| Gear Identification Number | ('centrally registered identifier' and 'manufactured product') |
| Water Depth | (elevation or depth) and ('inheres in' some 'marine water body') |
| Pressure | pressure and ('inheres in' some 'sea water') |
| Temperature | temperature and ('inheres in' some 'sea water') |
| Salinity | osmolarity and ('inheres in' some ('salt' and ('part of' some 'sea water'))) |
| Horizontal Current Velocity | velocity and ('inheres in' some 'marine current' and 'has quality' some 'horizontal') |
| Current Direction | direction |
| East-west Current Velocity | velocity and ('inheres in' some 'marine current') |
| North-south Current Velocity | velocity and ('inheres in' some 'marine current') |
| Oxygen | 'concentration of' and ('inheres in' some (dioxygen and ('part of' some 'sea water'))) |
chlorophyll_a.csv
Data set is about: 'chlorophyll a' and ('part of' some 'marine water body')
| column | post compositional annotation: |
|---|---|
| Event | 'centrally registered identifier' and 'is about' some ('observing process' or 'specimen collection process') |
| Date Time | temporal instant |
| Latitude | latitude coordinate measurement datum |
| Longitude | longitude coordinate measurement datum |
| Elevation | (elevation or depth) and ('inheres in' some 'marine water body') |
| Water Depth | (elevation or depth) and ('inheres in' some 'marine water body') |
| Chlorophyll A | 'concentration of' and ('inheres in' some ('chlorophyll a' and ('part of' some 'sea water'))) |
global_chlorophyll_a.csv
Data is about: 'chlorophyll a' and ('part of' some 'marine water body')
| column | post compositional annotation: |
|---|---|
| Ordinal Number | 'categorical label' and 'is about' some specimen |
| Date Time | temporal instant |
| Latitude | latitude coordinate measurement datum |
| Longitude | longitude coordinate measurement datum |
| Water Depth | (elevation or depth) and ('inheres in' some 'marine water body') |
| Total Chlorophyll A | 'concentration of' and ('inheres in' some ('chlorophyll a' and ('part of' some 'sea water'))) |
| Diatom Chlorophyll A | 'concentration of' and ('inheres in' some ('chlorophyll a' and ('part of' some Bacillariophyta))) |
| Haptophyte Chlorophyll A | 'concentration of' and ('inheres in' some ('chlorophyll a' and ('part of' some Coccolithales))) |
| Prokaryote Chlorophyll A | 'concentration of' and ('inheres in' some ('chlorophyll a' and ('part of' some Bacteria))) |
| Database Cross Reference | hasDbXref |
biogenic_particle_flux.csv
Data is about: 'material transport process' and ('has input' some 'marine snow')
snow_height.csv
Data is about: 'first year ice'
| column | single term annotation | need to create class | post compositional annotation: |
|---|---|---|---|
| Date Time | 'temporal instant' | ||
| Latitude | 'latitude coordinate measurement datum' | ||
| Longitude | 'longitude coordinate measurement datum' | ||
| Snow Height Sensor 1 | snow thickness | Part of MIxS PR | thickness and ('inheres in' some 'snow') |
| Snow Height Sensor 2 | snow thickness | Part of MIxS PR | thickness and ('inheres in' some 'snow') |
| Snow Height Sensor 3 | snow thickness | Part of MIxS PR | thickness and ('inheres in' some 'snow') |
| Snow Height Sensor 4 | snow thickness | Part of MIxS PR | thickness and ('inheres in' some 'snow') |
| Snow Height Mean | snow thickness | Part of MIxS PR | 'expected value' and 'is about' min 2 ('data item' and 'is about' some (thickness and 'inheres in' some 'snow')) |
| Atmospheric Pressure | atmospheric pressure | Part of MIxS PR | pressure and ('inheres in' some atmosphere) |
| Air Temperature | temperature of air | ||
| Ice Temperature | temperature and ('inheres in' some 'sea ice') |
influence_snow_depth.csv
Data is about: 'physical quality' and ('inheres in' some ('marine water body' and ('adjacent to' some 'sea ice')))
| column | Single term annotation | need to create class | post compositional annotation: |
|---|---|---|---|
| Date Time | temporal instant | ||
| Latitude | latitude coordinate measurement datum | ||
| Longitude | longitude coordinate measurement datum | ||
| Relative Distance X | distance and ('inheres in' some 'sea ice') | ||
| Relative Distance Y | distance and ('inheres in' some 'sea ice') | ||
| Sea Ice Thickness | sea ice thickness | yes part of cryoMIxS PR | thickness and ('inheres in' some 'sea ice') |
| Signal Strength | 'degree of illumination' and ('inheres in' some 'sea ice') | ||
| Database Cross Reference | hasDbXref |
ice_algal_chlorophyll_myi.csv
Data is about: ('chlorophyll a' and 'multiyear ice')
ice_algal_chlorophyll_fyi.csv
Data is about: ('chlorophyll a' and 'first year ice')
| column | post compositional annotation: |
|---|---|
| Identification | 'categorical label' and 'is about' some specimen |
| Site | site |
| Sea Ice Type | 'categorical label' and 'is about' some 'first year ice' |
| Ice Or Snow Depth | depth and ('inheres in' some ('first year ice' or 'snow')) |
| Minimum Ice Or Snow Depth | depth and ('inheres in' some ('first year ice' or 'snow')) |
| Maximum Ice Or Snow Depth | depth and ('inheres in' some ('first year ice' or 'snow')) |
| Chlorophyll A Concentration | 'concentration of' and ('inheres in' some ('chlorophyll a' and ('part of' some 'sea water'))) |
| Areal Chlorophyll A | 'concentration of' and ('inheres in' some ('chlorophyll a' and ('part of' some ('sea water' and 'part of' some 'liquid planetary surface')))) |
| Salinity | osmolarity and ('inheres in' some ('salt' and ('part of' some meltwater))) |
| Texture | 'morphology' and ('inheres in' some 'first year ice') |
| Sea Ice Type Portion | 'fiat object part' and 'part of' some 'first year ice' |
molecular_function_bathyal.csv
data is about some: 'molecular_function' and ('part of' some ('microbial community' and ('part of' some ('deep marine sediment' and ('part of' some 'marine bathyal zone biome')))))
| column | post compositional annotation: |
|---|---|
| Molecular Function | 'categorical label' and 'is about' some 'molecular_function' |
| Sample 1 Molecular Function Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'molecular_function'))) |
| Sample 2 Molecular Function Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'molecular_function'))) |
molecular_function_abyssal.csv
data is about some: 'molecular_function' and ('part of' some ('microbial community' and ('part of' some ('deep marine sediment' and ('part of' some 'marine abyssal zone biome')))))
| column | post compositional annotation: |
|---|---|
| Molecular Function | 'categorical label' and 'is about' some 'molecular_function' |
| Sample 1 Molecular Function Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'molecular_function'))) |
| Sample 2 Molecular Function Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'molecular_function'))) |
molecular_function_neritic.csv
data is about some: 'molecular_function' and ('part of' some ('microbial community' and ('part of' some ('sandy sediment' and ('part of' some 'marine neritic benthic zone biome')))))
| column | post compositional annotation: |
|---|---|
| Molecular Function | 'categorical label' and 'is about' some 'molecular_function' |
| Sample 1 Molecular Function Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'molecular_function'))) |
| Sample 2 Molecular Function Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'molecular_function'))) |
| Sample 3 Molecular Function Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'molecular_function'))) |
| Sample 4 Molecular Function Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'molecular_function'))) |
cellular_components_bathyal.csv
data is about some: 'cellular_component' and ('part of' some ('microbial community' and ('part of' some ('deep marine sediment' and ('part of' some 'marine bathyal zone biome')))))
| column | post compositional annotation: |
|---|---|
| Cellular Components | 'categorical label' and 'is about' some 'cellular_component' |
| Sample 1 Cellular Components Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'cellular_component'))) |
| Sample 2 Cellular Components Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'cellular_component'))) |
cellular_components_abyssal.csv
data is about some: 'cellular_component' and ('part of' some ('microbial community' and ('part of' some ('deep marine sediment' and ('part of' some 'marine abyssal zone biome')))))
| column | post compositional annotation: |
|---|---|
| Cellular Components | 'categorical label' and 'is about' some 'cellular_component' |
| Sample 1 Cellular Components Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'cellular_component'))) |
| Sample 2 Cellular Components Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'cellular_component'))) |
cellular_components_neritic.csv
data is about some: 'cellular_component' and ('part of' some ('microbial community' and ('part of' some ('sandy sediment' and ('part of' some 'marine neritic benthic zone biome')))))
| column | post compositional annotation: |
|---|---|
| Cellular Components | 'categorical label' and 'is about' some 'cellular_component' |
| Sample 1 Cellular Components Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'cellular_component'))) |
| Sample 2 Cellular Components Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'cellular_component'))) |
| Sample 3 Cellular Components Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'cellular_component'))) |
| Sample 4 Cellular Components Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'cellular_component'))) |
biological_process_bathyal.csv
data is about some: 'biological_process' and ('part of' some ('microbial community' and ('part of' some ('deep marine sediment' and ('part of' some 'marine bathyal zone biome')))))
| column | post compositional annotation: |
|---|---|
| Biological Process | 'categorical label' and 'is about' some 'biological_process' |
| Sample 1 Biological Process Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'biological_process'))) |
| Sample 2 Biological Process Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'biological_process'))) |
biological_process_abyssal.csv
data is about some: 'biological_process' and ('part of' some ('microbial community' and ('part of' some ('deep marine sediment' and ('part of' some 'marine abyssal zone biome')))))
| column | post compositional annotation: |
|---|---|
| Biological Process | 'categorical label' and 'is about' some 'biological_process' |
| Sample 1 Biological Process Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'biological_process'))) |
| Sample 2 Biological Process Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'biological_process'))) |
biological_process_neritic.csv
data is about some: 'biological_process' and ('part of' some ('microbial community' and ('part of' some ('sandy sediment' and ('part of' some 'marine neritic benthic zone biome')))))
| column | post compositional annotation: |
|---|---|
| Biological Process | 'categorical label' and 'is about' some 'biological_process' |
| Sample 1 Biological Process Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'biological_process'))) |
| Sample 2 Biological Process Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'biological_process'))) |
| Sample 3 Biological Process Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'biological_process'))) |
| Sample 4 Biological Process Count | 'discrete random variable' and ('is about' some ('categorical label' and ('is about' some 'biological_process'))) |
microbial_taxonomy_bathyal.csv
*in the annotation have classes be an 'operational taxonomic unit matrix' (or part thereof) instead of a 'data matrix'. Make sure to add query cases for these in the query script.
data is about some: 'community species diversity' and ('inheres in' some ('microbial community' and ('part of' some ('deep marine sediment' and ('part of' some 'marine bathyal zone biome')))))
| column | post compositional annotation: |
|---|---|
| Sample 1 Operational Taxonomic Unit Count | 'discrete random variable' and ('is about' some ('community species diversity' and ('inheres in' some 'microbial community'))) |
| Sample 2 Operational Taxonomic Unit Count | 'discrete random variable' and ('is about' some ('community species diversity' and ('inheres in' some 'microbial community'))) |
| Domain | (Bacteria or Archaea or Eukaryota) |
| Phylum | phylum |
| Class | class |
| Order | order |
| Family | family |
| Genus | genus |
microbial_taxonomy_abyssal.csv
*in the annotation have classes be an 'operational taxonomic unit matrix' (or part thereof) instead of a 'data matrix'. Make sure to add query cases for these in the query script.
data is about some: 'community species diversity' and ('inheres in' some ('microbial community' and ('part of' some ('deep marine sediment' and ('part of' some 'marine abyssal zone biome')))))
| column | post compositional annotation: |
|---|---|
| Sample 1 Operational Taxonomic Unit Count | 'discrete random variable' and ('is about' some ('community species diversity' and ('inheres in' some 'microbial community'))) |
| Sample 2 Operational Taxonomic Unit Count | 'discrete random variable' and ('is about' some ('community species diversity' and ('inheres in' some 'microbial community'))) |
| Domain | (Bacteria or Archaea or Eukaryota) |
| Phylum | phylum |
| Class | class |
| Order | order |
| Family | family |
| Genus | genus |