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env.yml
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env.yml
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name: ntm-profiler
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bc=1.07.1=h01d97ff_0
- bcftools=1.12=hffb3c55_1
- bedtools=2.30.0=haa7f73a_2
- blast=2.12.0=pl5262h78c34c6_0
- boost-cpp=1.74.0=hf3dc895_5
- brotlipy=0.7.0=py39hcbf5805_1001
- bwa=0.7.17=h1f540d2_9
- bzip2=1.0.8=hc929b4f_4
- c-ares=1.18.1=h0d85af4_0
- ca-certificates=2022.3.29=hecd8cb5_0
- certifi=2021.10.8=py39h6e9494a_2
- cffi=1.14.6=py39he338e87_2
- chardet=4.0.0=py39h6e9494a_2
- charset-normalizer=2.0.0=pyhd8ed1ab_0
- colorama=0.4.4=pyh9f0ad1d_0
- cryptography=36.0.0=py39hf6deb26_0
- curl=7.82.0=h9dce1e3_0
- delly=0.8.7=h6d7b568_1
- dsk=2.2.0=ha92aebf_2
- entrez-direct=16.2=h193322a_0
- expat=2.4.8=h96cf925_0
- freebayes=1.3.5=py39h58092cd_3
- gatk4=4.2.5.0=hdfd78af_0
- gettext=0.21.0=h7535e17_0
- git=2.35.2=pl5321h9a94999_0
- gsl=2.6=h71c5fe9_2
- htslib=1.12=hc38c3fb_1
- icu=69.1=he49afe7_0
- idna=3.2=pyhd3eb1b0_0
- jq=1.6=hc929b4f_1000
- k8=0.2.5=h6151dfb_2
- kmc=3.2.1=h1a264f4_2
- krb5=1.19.3=hb98e516_0
- libblas=3.9.0=12_osx64_openblas
- libcblas=3.9.0=12_osx64_openblas
- libcbor=0.9.0=he49afe7_0
- libcurl=7.82.0=h9dce1e3_0
- libcxx=12.0.1=habf9029_0
- libdeflate=1.7=h35c211d_5
- libedit=3.1.20210714=h9ed2024_0
- libev=4.33=haf1e3a3_1
- libffi=3.4.2=he49afe7_4
- libfido2=1.10.0=hd991315_0
- libgfortran=5.0.0=9_3_0_h6c81a4c_23
- libgfortran5=9.3.0=h6c81a4c_23
- libiconv=1.16=haf1e3a3_0
- libnghttp2=1.47.0=hca56917_0
- libopenblas=0.3.18=openmp_h3351f45_0
- libssh2=1.10.0=hd3787cc_2
- libxml2=2.9.12=h7e28ab6_1
- libzlib=1.2.11=h9173be1_1013
- llvm-openmp=12.0.1=hda6cdc1_1
- lz4-c=1.9.3=he49afe7_1
- minimap2=2.24=h1f540d2_1
- ncurses=6.2=h2e338ed_4
- oniguruma=6.9.7.1=h0d85af4_0
- openjdk=11.0.13=h8346a28_0
- openssh=9.0p1=he782c1b_0
- openssl=3.0.2=h6c3fc93_1
- parallel=20211022=h694c41f_0
- pcre=8.45=he49afe7_0
- pcre2=10.37=ha16e1b2_0
- perl=5.26.2=hbcb3906_1008
- perl-archive-tar=2.32=pl526_0
- perl-carp=1.38=pl526_3
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526h6de7cb9_0
- perl-compress-raw-zlib=2.087=pl526h770b8ee_0
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-io-compress=2.087=pl526h6de7cb9_0
- perl-io-zlib=1.10=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h04f5b5a_3
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-pathtools=3.75=pl526h1de35cc_1
- perl-scalar-list-utils=1.52=pl526h01d97ff_0
- perl-types-serialiser=1.0=pl526_2
- perl-xsloader=0.24=pl526_0
- pip=21.3.1=pyhd8ed1ab_0
- pycparser=2.20=pyh9f0ad1d_2
- pyopenssl=21.0.0=pyhd8ed1ab_0
- pysocks=1.7.1=py39h6e9494a_4
- python=3.9.7=h38b4d05_3_cpython
- python_abi=3.9=2_cp39
- readline=8.1=h05e3726_0
- requests=2.26.0=pyhd8ed1ab_0
- samclip=0.4.0=hdfd78af_1
- samtools=1.12=hfcfc997_1
- seqkit=2.2.0=h527b516_0
- setuptools=58.4.0=py39h6e9494a_1
- six=1.16.0=pyh6c4a22f_0
- snpeff=5.1=hdfd78af_1
- sqlite=3.36.0=h23a322b_2
- tabixpp=1.1.0=h9cabb03_6
- tk=8.6.11=h5dbffcc_1
- tqdm=4.62.3=pyhd8ed1ab_0
- trimmomatic=0.39=hdfd78af_2
- tzdata=2021e=he74cb21_0
- urllib3=1.26.7=pyhd8ed1ab_0
- vcflib=1.0.2=h9954cba_5
- wheel=0.37.0=pyhd8ed1ab_1
- xz=5.2.5=haf1e3a3_1
- zlib=1.2.11=h9173be1_1013
- zstd=1.5.0=h582d3a0_0
- pip:
- ntm-profiler==0.1.2
- pathogen-profiler==2.0.3
- tbprofiler==4.0.0
prefix: /Users/jodyphelan/miniconda3/envs/ntm-profiler