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averageheapmap error #65

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stevenwonglovestudy opened this issue Dec 8, 2024 · 2 comments
Open

averageheapmap error #65

stevenwonglovestudy opened this issue Dec 8, 2024 · 2 comments

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@stevenwonglovestudy
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httest <- system.file("extdata", "htdata.RDS", package = "scRNAtoolVis")
pbmc <- readRDS(httest)

load markergene

markergene <- system.file("extdata", "top5pbmc.markers.csv", package = "scRNAtoolVis")
markers <- read.table(markergene, sep = ',', header = TRUE)
AverageHeatmap(object = pbmc,

  •            markerGene = markers$gene)
    

错误于AverageHeatmap(object = pbmc, markerGene = markers$gene):
没有"AverageHeatmap"这个函数

averageHeatmap(object = pbmc,

  •            markerGene = markers$gene)
    

错误于.make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version):
invalid non-character version specification 'x' (type: double)

@junjunlab
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1735542526791

@junjunlab
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> sessionInfo()
R version 4.4.1 (2024-06-14 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26100)

Matrix products: default


locale:
[1] LC_COLLATE=Chinese (Simplified)_China.utf8  LC_CTYPE=Chinese (Simplified)_China.utf8   
[3] LC_MONETARY=Chinese (Simplified)_China.utf8 LC_NUMERIC=C                               
[5] LC_TIME=Chinese (Simplified)_China.utf8    

time zone: Asia/Shanghai
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] scRNAtoolVis_0.1.0 lubridate_1.9.3    forcats_1.0.0      stringr_1.5.1     
 [5] dplyr_1.1.4        purrr_1.0.2        readr_2.1.5        tidyr_1.3.1       
 [9] tibble_3.2.1       ggplot2_3.5.1      tidyverse_2.0.0   

loaded via a namespace (and not attached):
  [1] RColorBrewer_1.1-3     shape_1.4.6.1          ggdendro_0.2.0        
  [4] rstudioapi_0.17.0      jsonlite_1.8.8         magrittr_2.0.3        
  [7] magick_2.8.5           spatstat.utils_3.1-0   farver_2.1.2          
 [10] GlobalOptions_0.1.2    vctrs_0.6.5            ROCR_1.0-11           
 [13] Cairo_1.6-2            spatstat.explore_3.3-2 htmltools_0.5.8.1     
 [16] sctransform_0.4.1      parallelly_1.38.0      KernSmooth_2.23-24    
 [19] htmlwidgets_1.6.4      ica_1.0-3              plyr_1.8.9            
 [22] plotly_4.10.4          zoo_1.8-12             igraph_2.0.3          
 [25] iterators_1.0.14       mime_0.12              lifecycle_1.0.4       
 [28] pkgconfig_2.0.3        Matrix_1.7-0           R6_2.5.1              
 [31] fastmap_1.2.0          clue_0.3-65            fitdistrplus_1.2-1    
 [34] future_1.34.0          shiny_1.9.1            digest_0.6.37         
 [37] colorspace_2.1-1       S4Vectors_0.40.2       patchwork_1.3.0       
 [40] Seurat_5.1.0           tensor_1.5             RSpectra_0.16-2       
 [43] irlba_2.3.5.1          progressr_0.14.0       fansi_1.0.6           
 [46] spatstat.sparse_3.1-0  timechange_0.3.0       httr_1.4.7            
 [49] polyclip_1.10-7        abind_1.4-8            compiler_4.4.1        
 [52] splancs_2.01-45        doParallel_1.0.17      withr_3.0.1           
 [55] fastDummies_1.7.4      R.utils_2.12.3         MASS_7.3-61           
 [58] rjson_0.2.21           ggsci_3.2.0            tools_4.4.1           
 [61] lmtest_0.9-40          httpuv_1.6.15          future.apply_1.11.2   
 [64] goftest_1.2-3          R.oo_1.26.0            glue_1.7.0            
 [67] dbscan_1.2-0           nlme_3.1-166           promises_1.3.0        
 [70] grid_4.4.1             Rtsne_0.17             cluster_2.1.6         
 [73] reshape2_1.4.4         generics_0.1.3         gtable_0.3.5          
 [76] spatstat.data_3.1-2    tzdb_0.4.0             R.methodsS3_1.8.2     
 [79] data.table_1.16.2      hms_1.1.3              sp_2.1-4              
 [82] utf8_1.2.4             BiocGenerics_0.50.0    spatstat.geom_3.3-3   
 [85] RcppAnnoy_0.0.22       foreach_1.5.2          ggrepel_0.9.6         
 [88] RANN_2.6.2             pillar_1.9.0           spam_2.11-0           
 [91] RcppHNSW_0.6.0         later_1.3.2            circlize_0.4.16       
 [94] splines_4.4.1          lattice_0.22-6         survival_3.7-0        
 [97] deldir_2.0-4           tidyselect_1.2.1       ComplexHeatmap_2.20.0 
[100] miniUI_0.1.1.1         pbapply_1.7-2          gridExtra_2.3         
[103] IRanges_2.38.1         ggunchull_1.0.1        scattermore_1.2       
[106] stats4_4.4.1           matrixStats_1.3.0      stringi_1.8.4         
[109] lazyeval_0.2.2         codetools_0.2-20       interp_1.1-6          
[112] sgeostat_1.0-27        cli_3.6.3              uwot_0.2.2            
[115] alphahull_2.5          xtable_1.8-4           reticulate_1.39.0     
[118] munsell_0.5.1          Rcpp_1.0.13            globals_0.16.3        
[121] spatstat.random_3.3-2  png_0.1-8              spatstat.univar_3.0-1 
[124] parallel_4.4.1         dotCall64_1.2          listenv_0.9.1         
[127] viridisLite_0.4.2      scales_1.3.0           ggridges_0.5.6        
[130] crayon_1.5.3           SeuratObject_5.0.2     leiden_0.4.3.1        
[133] GetoptLong_1.0.5       rlang_1.1.4            cowplot_1.1.3 

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