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Jessica Mattick edited this page Mar 27, 2020 · 26 revisions

Welcome to the RNA_Editing_Detection_Pipeline wiki!

Usage:

Retrieve Fastq Files from SRA

  1. Create a txt file containing a list of SRA accession numbers.
  2. Run get_SRA_data.py to download data

Parameters:

  • -a or --acc_list: path to file containing list of SRA accession numbers
  • -o or --output: path to output directory

Example:

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