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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(anchor_pair_enrich)
export(compare_motif_pairs)
export(filter_motifs)
export(filter_pair_motifs)
export(find_ep_coenrichment)
export(get_specific_interactions)
export(plot_motif_occurrence)
export(scan_motifs)
importFrom(BSgenome,getBSgenome)
importFrom(BiocGenerics,unique)
importFrom(GenomeInfoDb,Seqinfo)
importFrom(GenomicFeatures,promoters)
importFrom(GenomicInteractions,GenomicInteractions)
importFrom(GenomicInteractions,anchorOne)
importFrom(GenomicInteractions,anchorTwo)
importFrom(GenomicInteractions,annotateInteractions)
importFrom(GenomicInteractions,isInteractionType)
importFrom(GenomicInteractions,plotInteractionAnnotations)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,trim)
importFrom(IRanges,IRanges)
importFrom(MatrixGenerics,colMeans)
importFrom(S4Vectors,elementMetadata)
importFrom(SummarizedExperiment,assays)
importFrom(TFBSTools,readJASPARMatrix)
importFrom(ggplot2,aes)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,ggplot)
importFrom(matrixStats,colMaxs)
importFrom(matrixStats,colMins)
importFrom(matrixStats,rowMaxs)
importFrom(matrixStats,rowMins)
importFrom(motifmatchr,matchMotifs)
importFrom(stats,cor.test)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(utils,installed.packages)