environment.yml

name: egp
channels:
- defaults
- conda-forge
dependencies:
- python=3.8
# Standard Libraries
- numpy             # Numerical Linear Algebra
- scipy             # Scientific Computing
- xarray            # Data structures
- pandas            # Data structure
- scikit-learn      # Machine Learning
- scikit-image      # Image Processing
- statsmodels       # Statistical Learning
# Scale
- cython
- numba
- dask              # Out-of-Core processing
- dask-ml           # Out-of-Core machine learning
# Storage
- hdf5              # standard large storage h5
- pytables          # high-level storage h5
- conda-forge::zarr
# Plotting Libraries
- matplotlib        # standard plotting library
- seaborn           # Stats viz library
- conda-forge::cartopy
- plotly::plotly==4.6.0
# GUI
- conda-forge::tqdm              # 
# GP Libraries
- pytorch::pytorch
- pytorch::torchvision
- pytorch::cpuonly
- pip
- pip:
    # JAX ECOSYSTEM
    - jax                       # Jax
    - jaxlib                    # Jax Library
    - numpyro                   # probabilitistic Jax library
    - flax                      # Jax Neural Networks
    # PYTORCH ECOSYSTEM
    - pyro-ppl                  # probabilistic programming library
    - gpytorch                  # Gaussian Processes
    - pytorch-lightning         # PyTorch Formatting
    # GPY
    - "git+https://github.com/SheffieldML/GPy.git#egg=GPy"
    # Formatters
    - black
    - pylint
    - isort
    - flake8
    - mypy
    - pytest
    # Jupyter
    - ipykernel
    - ipywidgets
    # OTHER
    - joblib          # Embarssingly parallel
    # DOCUMENTATION
    - pyprojroot
    - mkdocs-material 
    - mknotebooks
    - pymdown-extensions 
    - pdoc3