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README_euler.md

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Running Scripts on Euler

  • Step I : Open Terminal/PowerShell
  • Step II : Run the command ssh [email protected]
  • Step III : Enter the password when prompted
  • Step IV : In the euler terminal enter the command mkdir wat_bal_python
  • Step V : Then exit the terminal with exit command
  • Step VI : Navigate to the directory of your project folder
  • Step VI : run the command ./copy_to_euler.sh username
  • Step (Optional) : If you see the permission denied message then run the command chmod +x copy_to_euler.sh
  • Step VII : Enter the password, you will be asked password 4 times
  • Step VIII : In a new terminal (or the same terminal) login to euler cluster with the command ssh [email protected]
  • Step IX : Change directory to wat_bal_python with cd wat_bal_python
  • Step X : Run the job at cluster using the command ./run.sh
  • Step XI : Once the job is finished, copy the parameters and plots to your computer by running the script copy_from_euler.sh username. If you dont have any plots folder then you can comment the line to copy plots in the copy_from_euler.sh file

Other Info

  • You can check the running jobs with the command bjobs
  • You can kill a job with the command bkill job_id
  • You can modify the run.sh script to run run_opt.py or run_sim.py
  • You can run multiple jobs at once but just take care of dependencies.
    • Like run_sim.py needs to access parameters.h5 file and two scripts cannot open the same h5py file simultaneously
    • If you plan to run multiple optimization algorithms at once make sure all of them saves the parameters in different h5py file.