Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

using extract_data on Open Ephys files #47

Open
Lozanoda opened this issue Oct 29, 2021 · 3 comments
Open

using extract_data on Open Ephys files #47

Lozanoda opened this issue Oct 29, 2021 · 3 comments

Comments

@Lozanoda
Copy link

I am using the Open Ephys binary files instead of the spike GLX ephys files and the extract_data function doesnt seem to recognize them. Is there way to convert these to the spike glx format or alter the function so it can read the open ephy outputs for the spike and lfp data?
Thank you!

@MCangelov
Copy link

I've run into the same issue and would love to know if there's a workaround.

@jonahpearl
Copy link

Following up to see if an open ephys extractor was ever built? It looks like the extract files functionality more or less replicates an export to phy, and then adds on the RMS information in IBL format, so I'd bet that this could be done fairly painlessly with a wrapper in spike interface. I'm happy to work on it if no one else has done it.

@mayofaulkner
Copy link
Contributor

Hello! Indeed, we still haven't got around to writing an extractor for open ephys data. If you would be happy to work on that, that would be great! Once you are done if you could make a PR and then I can review. Thank you for your help!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

4 participants