From c9a5e188ab6f0e4bea8116bc99da9e3fc69b0a88 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Thu, 24 Oct 2024 11:05:45 +0000 Subject: [PATCH] Update documentation --- FAQ.html | 24 +- _autosummary/one.alf.cache.html | 24 +- _autosummary/one.alf.exceptions.html | 38 ++- _autosummary/one.alf.files.html | 24 +- _autosummary/one.alf.html | 26 +- _autosummary/one.alf.io.html | 24 +- .../one.alf.spec.COLLECTION_SPEC.html | 24 +- _autosummary/one.alf.spec.FILE_SPEC.html | 24 +- _autosummary/one.alf.spec.FULL_SPEC.html | 24 +- _autosummary/one.alf.spec.REL_PATH_SPEC.html | 24 +- _autosummary/one.alf.spec.SESSION_SPEC.html | 24 +- .../one.alf.spec.SPEC_DESCRIPTION.html | 24 +- _autosummary/one.alf.spec.html | 24 +- _autosummary/one.api.N_THREADS.html | 24 +- _autosummary/one.api.html | 45 +-- _autosummary/one.converters.html | 27 +- _autosummary/one.html | 24 +- .../one.params.CACHE_DIR_DEFAULT.html | 24 +- _autosummary/one.params.html | 24 +- _autosummary/one.registration.html | 24 +- _autosummary/one.remote.aws.html | 24 +- _autosummary/one.remote.base.ALYX_JSON.html | 24 +- _autosummary/one.remote.base.html | 24 +- .../one.remote.globus.CLIENT_KEY.html | 24 +- .../one.remote.globus.DEFAULT_PAR.html | 24 +- .../one.remote.globus.STATUS_MAP.html | 24 +- _autosummary/one.remote.globus.html | 24 +- _autosummary/one.remote.html | 24 +- _autosummary/one.tests.alf.html | 24 +- .../one.tests.alf.test_alf_files.html | 24 +- _autosummary/one.tests.alf.test_alf_io.html | 24 +- _autosummary/one.tests.alf.test_alf_spec.html | 24 +- _autosummary/one.tests.alf.test_cache.html | 24 +- _autosummary/one.tests.html | 24 +- _autosummary/one.tests.remote.html | 24 +- _autosummary/one.tests.remote.test_aws.html | 24 +- _autosummary/one.tests.remote.test_base.html | 24 +- .../one.tests.remote.test_globus.html | 24 +- _autosummary/one.tests.test_alyxclient.html | 30 +- _autosummary/one.tests.test_alyxrest.html | 24 +- _autosummary/one.tests.test_converters.html | 24 +- _autosummary/one.tests.test_one.html | 103 ++++--- _autosummary/one.tests.test_params.html | 24 +- _autosummary/one.tests.test_registration.html | 24 +- _autosummary/one.tests.util.html | 29 +- _autosummary/one.util.QC_TYPE.html | 24 +- _autosummary/one.util.html | 74 ++++- _autosummary/one.webclient.html | 29 +- _modules/index.html | 24 +- _modules/one/alf/cache.html | 54 ++-- _modules/one/alf/exceptions.html | 34 ++- _modules/one/alf/files.html | 24 +- _modules/one/alf/io.html | 24 +- _modules/one/alf/spec.html | 24 +- _modules/one/api.html | 241 +++++++++------ _modules/one/converters.html | 110 +++---- _modules/one/params.html | 31 +- _modules/one/registration.html | 27 +- _modules/one/remote/aws.html | 24 +- _modules/one/remote/base.html | 24 +- _modules/one/remote/globus.html | 26 +- _modules/one/tests/alf/test_alf_files.html | 24 +- _modules/one/tests/alf/test_alf_io.html | 26 +- _modules/one/tests/alf/test_alf_spec.html | 24 +- _modules/one/tests/alf/test_cache.html | 33 +-- _modules/one/tests/remote/test_aws.html | 24 +- _modules/one/tests/remote/test_base.html | 24 +- _modules/one/tests/remote/test_globus.html | 26 +- _modules/one/tests/test_alyxclient.html | 125 +++++++- _modules/one/tests/test_alyxrest.html | 24 +- _modules/one/tests/test_converters.html | 44 +-- _modules/one/tests/test_one.html | 275 +++++++++++++----- _modules/one/tests/test_params.html | 24 +- _modules/one/tests/test_registration.html | 24 +- _modules/one/tests/util.html | 44 +-- _modules/one/util.html | 197 +++++++++---- _modules/one/webclient.html | 77 +++-- .../_autosummary/one.alf.exceptions.rst.txt | 1 + _sources/one_installation.md.txt | 2 +- _static/basic.css | 15 +- _static/css/badge_only.css | 2 +- _static/css/theme.css | 2 +- _static/doctools.js | 7 - _static/js/versions.js | 224 ++++++++++++++ _static/language_data.js | 7 - _static/searchtools.js | 38 ++- alf_intro.html | 24 +- api_reference.html | 24 +- contributing.html | 24 +- genindex.html | 34 ++- index.html | 28 +- notebooks/alyx_files.html | 28 +- notebooks/data_sharing.html | 28 +- notebooks/datasets_and_types.html | 28 +- notebooks/experiment_ids.html | 28 +- notebooks/one_advanced/one_advanced.html | 28 +- notebooks/one_list/one_list.html | 28 +- notebooks/one_load/one_load.html | 28 +- notebooks/one_modes.html | 28 +- notebooks/one_quickstart.html | 28 +- notebooks/one_search/one_search.html | 28 +- notebooks/recording_data_access.html | 28 +- notebooks/useful_alyx_queries.html | 28 +- objects.inv | Bin 20066 -> 20136 bytes one_installation.html | 26 +- one_reference.html | 24 +- py-modindex.html | 24 +- readme.html | 24 +- search.html | 24 +- searchindex.js | 2 +- 110 files changed, 2222 insertions(+), 1689 deletions(-) create mode 100644 _static/js/versions.js diff --git a/FAQ.html b/FAQ.html index 08ea3f26..8be76785 100644 --- a/FAQ.html +++ b/FAQ.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ FAQ — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.cache.html b/_autosummary/one.alf.cache.html index f64035ae..f74dba32 100644 --- a/_autosummary/one.alf.cache.html +++ b/_autosummary/one.alf.cache.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.cache — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.exceptions.html b/_autosummary/one.alf.exceptions.html index 82bb2941..65fceb52 100644 --- a/_autosummary/one.alf.exceptions.html +++ b/_autosummary/one.alf.exceptions.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.exceptions — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -135,7 +133,7 @@

one.alf.exceptions

-

ALyx File related errors.

+

ALyx File related errors and warnings.

A set of Alyx and ALF related error classes which provide a more verbose description of the raised issues.

Exceptions

@@ -156,7 +154,10 @@

ALFObjectNotFound(*args[, terse])

'Object not found' error

-

AlyxSubjectNotFound(*args[, terse])

+

ALFWarning

+

Cautions when loading ALF datasets.

+ +

AlyxSubjectNotFound(*args[, terse])

'Subject not found' error

@@ -245,6 +246,13 @@ +
+
+exception ALFWarning[source]
+

Bases: Warning

+

Cautions when loading ALF datasets.

+
+
diff --git a/_autosummary/one.alf.files.html b/_autosummary/one.alf.files.html index 1bfc1e3f..51ca4354 100644 --- a/_autosummary/one.alf.files.html +++ b/_autosummary/one.alf.files.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.files — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.html b/_autosummary/one.alf.html index 9b7da1ab..f6924d73 100644 --- a/_autosummary/one.alf.html +++ b/_autosummary/one.alf.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -141,7 +139,7 @@

Construct Parquet database from local file system.

exceptions

-

ALyx File related errors.

+

ALyx File related errors and warnings.

files

Module for identifying and parsing ALF file names.

diff --git a/_autosummary/one.alf.io.html b/_autosummary/one.alf.io.html index 8d0ce14e..e7793211 100644 --- a/_autosummary/one.alf.io.html +++ b/_autosummary/one.alf.io.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.io — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.spec.COLLECTION_SPEC.html b/_autosummary/one.alf.spec.COLLECTION_SPEC.html index b18492e5..7bd95c5e 100644 --- a/_autosummary/one.alf.spec.COLLECTION_SPEC.html +++ b/_autosummary/one.alf.spec.COLLECTION_SPEC.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.spec.COLLECTION_SPEC — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.spec.FILE_SPEC.html b/_autosummary/one.alf.spec.FILE_SPEC.html index 503ca11a..2b7de030 100644 --- a/_autosummary/one.alf.spec.FILE_SPEC.html +++ b/_autosummary/one.alf.spec.FILE_SPEC.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.spec.FILE_SPEC — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.spec.FULL_SPEC.html b/_autosummary/one.alf.spec.FULL_SPEC.html index a3da0b88..00759dad 100644 --- a/_autosummary/one.alf.spec.FULL_SPEC.html +++ b/_autosummary/one.alf.spec.FULL_SPEC.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.spec.FULL_SPEC — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.spec.REL_PATH_SPEC.html b/_autosummary/one.alf.spec.REL_PATH_SPEC.html index 4cd4aa65..155abf01 100644 --- a/_autosummary/one.alf.spec.REL_PATH_SPEC.html +++ b/_autosummary/one.alf.spec.REL_PATH_SPEC.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.spec.REL_PATH_SPEC — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.spec.SESSION_SPEC.html b/_autosummary/one.alf.spec.SESSION_SPEC.html index 65a80fc2..51bbd347 100644 --- a/_autosummary/one.alf.spec.SESSION_SPEC.html +++ b/_autosummary/one.alf.spec.SESSION_SPEC.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.spec.SESSION_SPEC — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.spec.SPEC_DESCRIPTION.html b/_autosummary/one.alf.spec.SPEC_DESCRIPTION.html index a018a1de..6e37f77c 100644 --- a/_autosummary/one.alf.spec.SPEC_DESCRIPTION.html +++ b/_autosummary/one.alf.spec.SPEC_DESCRIPTION.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.spec.SPEC_DESCRIPTION — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.alf.spec.html b/_autosummary/one.alf.spec.html index cd692190..2b7807b9 100644 --- a/_autosummary/one.alf.spec.html +++ b/_autosummary/one.alf.spec.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.alf.spec — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.api.N_THREADS.html b/_autosummary/one.api.N_THREADS.html index ca08a50a..ee8395ff 100644 --- a/_autosummary/one.api.N_THREADS.html +++ b/_autosummary/one.api.N_THREADS.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.api.N_THREADS — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.api.html b/_autosummary/one.api.html index e03e29c2..841eeb03 100644 --- a/_autosummary/one.api.html +++ b/_autosummary/one.api.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.api — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -414,7 +412,7 @@
-list_datasets(eid=None, filename=None, collection=None, revision=None, qc=QC.FAIL, ignore_qc_not_set=False, details=False, query_type=None) → ndarray | DataFrame[source]
+list_datasets(eid=None, filename=None, collection=None, revision=None, qc=QC.FAIL, ignore_qc_not_set=False, details=False, query_type=None, default_revisions_only=False) → ndarray | DataFrame[source]

Given an eid, return the datasets for those sessions.

If no eid is provided, a list of all datasets is returned. When details is false, a sorted array of unique datasets is returned (their relative paths).

@@ -436,6 +434,8 @@

  • details (bool) – When true, a pandas DataFrame is returned, otherwise a numpy array of relative paths (collection/revision/filename) - see one.alf.spec.describe for details.

  • query_type (str) – Query cache (‘local’) or Alyx database (‘remote’).

    • +

  • default_revisions_only (bool) – When true, only matching datasets that are considered default revisions are returned. +If no ‘default_revision’ column is present, and ALFError is raised.

    • Returns:
    @@ -688,9 +688,10 @@
    load_datasets(eid: str | Path | UUID, datasets: List[str], collections: str | None = None, revisions: str | None = None, query_type: str | None = None, assert_present=True, download_only: bool = False, check_hash: bool = True) → Any[source]
    -

    Load datasets for a given session id. Returns two lists the length of datasets. The -first is the data (or file paths if download_data is false), the second is a list of -meta data Bunches. If assert_present is false, missing data will be returned as None.

    +

    Load datasets for a given session id.

    +

    Returns two lists the length of datasets. The first is the data (or file paths if +download_data is false), the second is a list of meta data Bunches. If assert_present is +false, missing data will be returned as None.

    Parameters:
      @@ -714,8 +715,8 @@
    Returns:

      -

    • list – A list of data (or file paths) the length of datasets

      • -

    • list – A list of meta data Bunches. If assert_present is False, missing data will be None

      • +

    • list – A list of data (or file paths) the length of datasets.

      • +

    • list – A list of meta data Bunches. If assert_present is False, missing data will be None.

    @@ -730,6 +731,8 @@ revision as separate keyword arguments.

  • To ensure you are loading the correct revision, use the revisions kwarg instead of relative paths.

    • +

  • To load an exact revision (i.e. not the last revision before a given date), pass in +a list of relative paths or a data frame.

    • Raises:
    @@ -945,7 +948,7 @@
    -list_datasets(eid=None, filename=None, collection=None, revision=None, qc=QC.FAIL, ignore_qc_not_set=False, details=False, query_type=None) → ndarray | DataFrame[source]
    +list_datasets(eid=None, filename=None, collection=None, revision=None, qc=QC.FAIL, ignore_qc_not_set=False, details=False, query_type=None, default_revisions_only=False) → ndarray | DataFrame[source]

    Given an eid, return the datasets for those sessions.

    If no eid is provided, a list of all datasets is returned. When details is false, a sorted array of unique datasets is returned (their relative paths).

    @@ -967,6 +970,8 @@

  • details (bool) – When true, a pandas DataFrame is returned, otherwise a numpy array of relative paths (collection/revision/filename) - see one.alf.spec.describe for details.

  • query_type (str) – Query cache (‘local’) or Alyx database (‘remote’).

    • +

  • default_revisions_only (bool) – When true, only matching datasets that are considered default revisions are returned. +If no ‘default_revision’ column is present, and ALFError is raised.

    • Returns:
    diff --git a/_autosummary/one.converters.html b/_autosummary/one.converters.html index f8d132d9..665a0b1a 100644 --- a/_autosummary/one.converters.html +++ b/_autosummary/one.converters.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.converters — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -329,8 +327,7 @@
    record2path(dataset) → Path | None[source]
    -

    Given a set of dataset records, checks the corresponding exists flag in the cache -correctly reflects the files system.

    +

    Given a set of dataset records, returns the corresponding paths

    Parameters:

    dataset (pd.DataFrame, pd.Series) – A datasets dataframe slice

    diff --git a/_autosummary/one.html b/_autosummary/one.html index 561e4512..74acbe5a 100644 --- a/_autosummary/one.html +++ b/_autosummary/one.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.params.CACHE_DIR_DEFAULT.html b/_autosummary/one.params.CACHE_DIR_DEFAULT.html index 094327df..828eeab8 100644 --- a/_autosummary/one.params.CACHE_DIR_DEFAULT.html +++ b/_autosummary/one.params.CACHE_DIR_DEFAULT.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.params.CACHE_DIR_DEFAULT — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.params.html b/_autosummary/one.params.html index 333e930d..7a78eac2 100644 --- a/_autosummary/one.params.html +++ b/_autosummary/one.params.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.params — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.registration.html b/_autosummary/one.registration.html index f6cc9298..349737f4 100644 --- a/_autosummary/one.registration.html +++ b/_autosummary/one.registration.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.registration — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.remote.aws.html b/_autosummary/one.remote.aws.html index 3a263b5f..0a4079ef 100644 --- a/_autosummary/one.remote.aws.html +++ b/_autosummary/one.remote.aws.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.remote.aws — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.remote.base.ALYX_JSON.html b/_autosummary/one.remote.base.ALYX_JSON.html index b21fb416..991c1b60 100644 --- a/_autosummary/one.remote.base.ALYX_JSON.html +++ b/_autosummary/one.remote.base.ALYX_JSON.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.remote.base.ALYX_JSON — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.remote.base.html b/_autosummary/one.remote.base.html index 00bfde9d..843e0fd1 100644 --- a/_autosummary/one.remote.base.html +++ b/_autosummary/one.remote.base.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.remote.base — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.remote.globus.CLIENT_KEY.html b/_autosummary/one.remote.globus.CLIENT_KEY.html index bebdbe3e..add0ed52 100644 --- a/_autosummary/one.remote.globus.CLIENT_KEY.html +++ b/_autosummary/one.remote.globus.CLIENT_KEY.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.remote.globus.CLIENT_KEY — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.remote.globus.DEFAULT_PAR.html b/_autosummary/one.remote.globus.DEFAULT_PAR.html index 3b09ce37..e0a2a215 100644 --- a/_autosummary/one.remote.globus.DEFAULT_PAR.html +++ b/_autosummary/one.remote.globus.DEFAULT_PAR.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.remote.globus.DEFAULT_PAR — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.remote.globus.STATUS_MAP.html b/_autosummary/one.remote.globus.STATUS_MAP.html index e06ce8db..31133425 100644 --- a/_autosummary/one.remote.globus.STATUS_MAP.html +++ b/_autosummary/one.remote.globus.STATUS_MAP.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.remote.globus.STATUS_MAP — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.remote.globus.html b/_autosummary/one.remote.globus.html index 94060f6f..83aea070 100644 --- a/_autosummary/one.remote.globus.html +++ b/_autosummary/one.remote.globus.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.remote.globus — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.remote.html b/_autosummary/one.remote.html index 07142173..c6506d62 100644 --- a/_autosummary/one.remote.html +++ b/_autosummary/one.remote.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.remote — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.alf.html b/_autosummary/one.tests.alf.html index 47cefb4e..647150d2 100644 --- a/_autosummary/one.tests.alf.html +++ b/_autosummary/one.tests.alf.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.alf — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.alf.test_alf_files.html b/_autosummary/one.tests.alf.test_alf_files.html index d50dfb0f..655dcf07 100644 --- a/_autosummary/one.tests.alf.test_alf_files.html +++ b/_autosummary/one.tests.alf.test_alf_files.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.alf.test_alf_files — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.alf.test_alf_io.html b/_autosummary/one.tests.alf.test_alf_io.html index ab23907e..5164151a 100644 --- a/_autosummary/one.tests.alf.test_alf_io.html +++ b/_autosummary/one.tests.alf.test_alf_io.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.alf.test_alf_io — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.alf.test_alf_spec.html b/_autosummary/one.tests.alf.test_alf_spec.html index 0bd1806f..9872d7b1 100644 --- a/_autosummary/one.tests.alf.test_alf_spec.html +++ b/_autosummary/one.tests.alf.test_alf_spec.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.alf.test_alf_spec — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.alf.test_cache.html b/_autosummary/one.tests.alf.test_cache.html index 1ff1e747..77c09ced 100644 --- a/_autosummary/one.tests.alf.test_cache.html +++ b/_autosummary/one.tests.alf.test_cache.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.alf.test_cache — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.html b/_autosummary/one.tests.html index a7971cd5..981b666e 100644 --- a/_autosummary/one.tests.html +++ b/_autosummary/one.tests.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.remote.html b/_autosummary/one.tests.remote.html index 953978b6..8966a410 100644 --- a/_autosummary/one.tests.remote.html +++ b/_autosummary/one.tests.remote.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.remote — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.remote.test_aws.html b/_autosummary/one.tests.remote.test_aws.html index 2103c844..9b0954df 100644 --- a/_autosummary/one.tests.remote.test_aws.html +++ b/_autosummary/one.tests.remote.test_aws.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.remote.test_aws — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.remote.test_base.html b/_autosummary/one.tests.remote.test_base.html index 5621f603..72bca354 100644 --- a/_autosummary/one.tests.remote.test_base.html +++ b/_autosummary/one.tests.remote.test_base.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.remote.test_base — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.remote.test_globus.html b/_autosummary/one.tests.remote.test_globus.html index a548d35f..63914118 100644 --- a/_autosummary/one.tests.remote.test_globus.html +++ b/_autosummary/one.tests.remote.test_globus.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.remote.test_globus — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.test_alyxclient.html b/_autosummary/one.tests.test_alyxclient.html index 96453d16..b080a22c 100644 --- a/_autosummary/one.tests.test_alyxclient.html +++ b/_autosummary/one.tests.test_alyxclient.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.test_alyxclient — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -335,6 +333,12 @@

    Tests setter for AlyxClient.cache_dir attribute.

    +
    +
    +test_paginated_response()[source]
    +

    Test the _PaginatedResponse class.

    +
    +
    diff --git a/_autosummary/one.tests.test_alyxrest.html b/_autosummary/one.tests.test_alyxrest.html index e22189e5..16982c71 100644 --- a/_autosummary/one.tests.test_alyxrest.html +++ b/_autosummary/one.tests.test_alyxrest.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.test_alyxrest — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.test_converters.html b/_autosummary/one.tests.test_converters.html index 0ec2959e..77c10af5 100644 --- a/_autosummary/one.tests.test_converters.html +++ b/_autosummary/one.tests.test_converters.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.test_converters — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.test_one.html b/_autosummary/one.tests.test_one.html index 38ae5354..da6f9294 100644 --- a/_autosummary/one.tests.test_one.html +++ b/_autosummary/one.tests.test_one.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.test_one — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -174,16 +172,16 @@

    This could be an offline test.

    TestOneDownload

    -

    Test downloading datasets using OpenAlyx

    +

    Test downloading datasets using OpenAlyx.

    TestOneMisc

    -

    Test functions in one.util

    +

    Test functions in one.util.

    TestOneRemote

    Test remote queries using OpenAlyx

    TestOneSetup

    -

    Test parameter setup upon ONE instantiation and calling setup methods

    +

    Test parameter setup upon ONE instantiation and calling setup methods.

    @@ -267,8 +265,8 @@
    test_check_filesystem()[source]
    -

    Test for One._check_filesystem. -Most is already covered by other tests, this checks that it can deal with dataset frame +

    Test for One._check_filesystem.

    +

    Most is already covered by other tests, this checks that it can deal with dataset frame without eid index and without a session_path column.

    @@ -494,25 +492,25 @@
    test_search_terms()[source]
    -

    Test OneAlyx.search_terms

    +

    Test OneAlyx.search_terms.

    test_load_dataset()[source]
    -

    Test OneAlyx.load_dataset

    +

    Test OneAlyx.load_dataset.

    test_load_object()[source]
    -

    Test OneAlyx.load_object

    +

    Test OneAlyx.load_object.

    test_get_details()[source]
    -

    Test OneAlyx.get_details

    +

    Test OneAlyx.get_details.

    @@ -521,7 +519,7 @@
    class TestOneDownload(methodName='runTest')[source]

    Bases: TestCase

    -

    Test downloading datasets using OpenAlyx

    +

    Test downloading datasets using OpenAlyx.

    tempdir = None
    @@ -541,7 +539,7 @@
    test_download_datasets()[source]
    -

    Test OneAlyx._download_dataset, _download_file and _dset2url

    +

    Test OneAlyx._download_dataset, _download_file and _dset2url.

    @@ -553,8 +551,8 @@
    test_tag_mismatched_file_record()[source]
    -

    Test for OneAlyx._tag_mismatched_file_record. -This method is also tested in test_download_datasets.

    +

    Test for OneAlyx._tag_mismatched_file_record.

    +

    This method is also tested in test_download_datasets.

    @@ -569,7 +567,7 @@
    class TestOneSetup(methodName='runTest')[source]

    Bases: TestCase

    -

    Test parameter setup upon ONE instantiation and calling setup methods

    +

    Test parameter setup upon ONE instantiation and calling setup methods.

    setUp() → None[source]
    @@ -579,48 +577,52 @@
    test_local_cache_setup_prompt()[source]
    -

    Test One.setup

    +

    Test One.setup.

    test_setup_silent()[source]
    -

    Test setting up parameters with silent flag. -- Mock getfile to return temp dir as param file location -- Mock input function as fail safe in case function erroneously prompts user for input

    +

    Test setting up parameters with silent flag.

    +
      +

    • Mock getfile to return temp dir as param file location

      • +

    • Mock input function as fail safe in case function erroneously prompts user for input

      • +
    test_setup_username()[source]
    -

    Test setting up parameters with a provided username. -- Mock getfile to return temp dir as param file location -- Mock input function as fail safe in case function erroneously prompts user for input -- Mock requests.post returns a fake user authentication response

    +

    Test setting up parameters with a provided username.

    +
      +

    • Mock getfile to return temp dir as param file location

      • +

    • Mock input function as fail safe in case function erroneously prompts user for input

      • +

    • Mock requests.post returns a fake user authentication response

      • +
    test_static_setup()[source]
    -

    Test OneAlyx.setup

    +

    Test OneAlyx.setup.

    test_setup()[source]
    -

    Test one.params.setup

    +

    Test one.params.setup.

    test_patch_params()[source]
    -

    Test patching legacy params to the new location

    +

    Test patching legacy params to the new location.

    test_one_factory()[source]
    -

    Tests the ONE class factory

    +

    Tests the ONE class factory.

    @@ -629,47 +631,54 @@
    class TestOneMisc(methodName='runTest')[source]

    Bases: TestCase

    -

    Test functions in one.util

    +

    Test functions in one.util.

    test_validate_date_range()[source]
    -

    Test one.util.validate_date_range

    +

    Test one.util.validate_date_range.

    test_index_last_before()[source]
    -

    Test one.util.index_last_before

    +

    Test one.util.index_last_before.

    test_collection_spec()[source]
    -

    Test one.util._collection_spec

    +

    Test one.util._collection_spec.

    test_revision_last_before()[source]
    -

    Test one.util.filter_revision_last_before

    +

    Test one.util.filter_revision_last_before.

    test_parse_id()[source]
    -

    Test one.util.parse_id

    +

    Test one.util.parse_id.

    test_autocomplete()[source]
    -

    Test one.util.autocomplete

    +

    Test one.util.autocomplete.

    test_LazyID()[source]
    -

    Test one.util.LazyID

    +

    Test one.util.LazyID.

    +
    + +
    +
    +test_ensure_list()[source]
    +

    Test one.util.ensure_list.

    +

    This function has now moved therefore we simply check for deprecation warning.

    diff --git a/_autosummary/one.tests.test_params.html b/_autosummary/one.tests.test_params.html index 230346f2..b40baf2e 100644 --- a/_autosummary/one.tests.test_params.html +++ b/_autosummary/one.tests.test_params.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.test_params — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.test_registration.html b/_autosummary/one.tests.test_registration.html index ff1e4044..cd36a305 100644 --- a/_autosummary/one.tests.test_registration.html +++ b/_autosummary/one.tests.test_registration.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.test_registration — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.tests.util.html b/_autosummary/one.tests.util.html index 5a2d522b..fc8b56df 100644 --- a/_autosummary/one.tests.util.html +++ b/_autosummary/one.tests.util.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.tests.util — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -221,7 +219,7 @@
    -revisions_datasets_table(collections=('', 'alf/probe00', 'alf/probe01'), revisions=('', '2020-01-08', '2021-07-06'), object='spikes', attributes=('times', 'waveforems'))[source]
    +revisions_datasets_table(collections=('', 'alf/probe00', 'alf/probe01'), revisions=('', '2020-01-08', '2021-07-06'), object='spikes', attributes=('times', 'waveforems'), touch_path=None)[source]

    Returns a datasets cache DataFrame containing datasets with revision folders.

    As there are no revised datasets on the test databases, this function acts as a fixture for testing the filtering of datasets by a revision.

    @@ -232,10 +230,11 @@

  • revisions (tuple) – A list of revisions

  • object (str) – An ALF object

  • attributes (tuple) – A list of ALF attributes

    • +

  • touch_path (pathlib.Path, str) – If provided, files are created in this directory.

    • Returns:
    -

    A datasets cache table containing datasets made from the input names

    +

    A datasets cache table containing datasets made from the input names.

    Return type:

    pd.DataFrame

    diff --git a/_autosummary/one.util.QC_TYPE.html b/_autosummary/one.util.QC_TYPE.html index cae3ed9f..45960298 100644 --- a/_autosummary/one.util.QC_TYPE.html +++ b/_autosummary/one.util.QC_TYPE.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.util.QC_TYPE — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_autosummary/one.util.html b/_autosummary/one.util.html index e10e70bd..157dcfdb 100644 --- a/_autosummary/one.util.html +++ b/_autosummary/one.util.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.util — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -341,7 +339,9 @@ not permitted.

  • revision_last_before (bool) – When true and no exact match exists, the (lexicographically) previous revision is used instead. When false the revision string is matched like collection and filename, -with regular expressions permitted.

    • +with regular expressions permitted. NB: When true and revision is None the default +revision is returned which may not be the last revision. If no default is defined, the +last revision is returned.

  • qc (str, int, one.alf.spec.QC) – Returns datasets at or below this QC level. Integer values should correspond to the QC enumeration NOT the qc category column codes in the pandas table.

  • ignore_qc_not_set (bool) – When true, do not return datasets for which QC is NOT_SET.

    • @@ -382,6 +382,25 @@ 
    >>> datasets filter_datasets(all_datasets, qc='PASS', ignore_qc_not_set=True)
    +
    +
    Raises:
    +
      +

    • one.alf.exceptions.ALFMultipleCollectionsFound – The matching list of datasets have more than one unique collection and assert_unique is + True.

      • +

    • one.alf.exceptions.ALFMultipleRevisionsFound – When revision_last_before is false, the matching list of datasets have more than one + unique revision. When revision_last_before is true, a ‘default_revision’ column exists, + and no revision is passed, this error means that one or more matching datasets have + multiple revisions specified as the default. This is typically an error in the cache table + itself as all datasets should have one and only one default revision specified.

      • +

    • one.alf.exceptions.ALFMultipleObjectsFound – The matching list of datasets have more than one unique filename and both assert_unique + and revision_last_before are true.

      • +

    • one.alf.exceptions.ALFError – When both assert_unique and revision_last_before is true, and a ‘default_revision’ + column exists but revision is None; one or more matching datasets have no default + revision specified. This is typically an error in the cache table itself as all datasets + should have one and only one default revision specified.

      • +
    +
    +

    Notes

    • It is not possible to match datasets that are in a given collection OR NOT in ANY collection. @@ -392,7 +411,7 @@

      -filter_revision_last_before(datasets, revision=None, assert_unique=True)[source]
      +filter_revision_last_before(datasets, revision=None, assert_unique=True, assert_consistent=False)[source]

      Filter datasets by revision, returning previous revision in ordered list if revision doesn’t exactly match.

      @@ -402,6 +421,8 @@

    • revision (str) – A revision string to match (regular expressions not permitted).

    • assert_unique (bool) – When true an alferr.ALFMultipleRevisionsFound exception is raised when multiple default revisions are found; an alferr.ALFError when no default revision is found.

      • +

    • assert_consistent (bool) – Will raise alferr.ALFMultipleRevisionsFound if matching revision is different between +datasets.

    Returns:
    @@ -410,7 +431,30 @@
    Return type:

    pd.DataFrame

    +
    Raises:
    +
      +

    • one.alf.exceptions.ALFMultipleRevisionsFound – When the ‘default_revision’ column exists and no revision is passed, this error means that + one or more matching datasets have multiple revisions specified as the default. This is + typically an error in the cache table itself as all datasets should have one and only one + default revision specified. + When assert_consistent is True, this error may mean that the matching datasets have + mixed revisions.

      • +

    • one.alf.exceptions.ALFMultipleObjectsFound – The matching list of datasets have more than one unique filename and both assert_unique + and revision_last_before are true.

      • +

    • one.alf.exceptions.ALFError – When both assert_unique and revision_last_before is true, and a ‘default_revision’ + column exists but revision is None; one or more matching datasets have no default + revision specified. This is typically an error in the cache table itself as all datasets + should have one and only one default revision specified.

      • +
    +
    +

    Notes

    +
      +

    • When revision is not None, the default revision value is not used. If an older revision is +the default one (uncommon), passing in a revision may lead to a newer revision being returned +than if revision is None.

      • +

    • A view is returned if a revision column is present, otherwise a copy is returned.

      • +
    diff --git a/_autosummary/one.webclient.html b/_autosummary/one.webclient.html index ddf70da1..26b20693 100644 --- a/_autosummary/one.webclient.html +++ b/_autosummary/one.webclient.html @@ -1,3 +1,5 @@ + + @@ -6,23 +8,19 @@ one.webclient — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -445,8 +443,9 @@
    logout()[source]
    -

    Log out from Alyx. -Deletes the cached authentication token for the currently logged-in user.

    +

    Log out from Alyx.

    +

    Deletes the cached authentication token for the currently logged-in user +and clears the REST cache.

    diff --git a/_modules/index.html b/_modules/index.html index d996c3b2..ca39add7 100644 --- a/_modules/index.html +++ b/_modules/index.html @@ -1,3 +1,5 @@ + + @@ -5,23 +7,19 @@ Overview: module code — ONE documentation - + - - - - - - - - - - + + + + + + + + diff --git a/_modules/one/alf/cache.html b/_modules/one/alf/cache.html index a26c6fd7..214968d1 100644 --- a/_modules/one/alf/cache.html +++ b/_modules/one/alf/cache.html @@ -1,3 +1,5 @@ + + @@ -5,23 +7,19 @@ one.alf.cache — ONE documentation - + - - - - - - - - - - + + + + + + + + @@ -139,7 +137,7 @@

    Source code for one.alf.cache

     from one.alf.io import iter_sessions, iter_datasets
 from one.alf.files import session_path_parts, get_alf_path
 from one.converters import session_record2path
-from one.util import QC_TYPE
+from one.util import QC_TYPE, patch_cache
 
 __all__ = ['make_parquet_db', 'remove_missing_datasets', 'DATASETS_COLUMNS', 'SESSIONS_COLUMNS']
 _logger = logging.getLogger(__name__)
@@ -161,7 +159,6 @@ 
    Source code for one.alf.cache
     DATASETS_COLUMNS = (
     'id',               # int64
     'eid',              # int64
-    'session_path',     # relative to the root
     'rel_path',         # relative to the session path, includes the filename
     'file_size',        # file size in bytes
     'hash',             # sha1/md5, computed in load function
@@ -198,7 +195,6 @@ 
    Source code for one.alf.cache
         return {
         'id': Path(rel_ses_path, rel_dset_path).as_posix(),
         'eid': str(ses_eid),
-        'session_path': str(rel_ses_path),
         'rel_path': Path(rel_dset_path).as_posix(),
         'file_size': file_size,
         'hash': md5(full_dset_path) if compute_hash else None,
@@ -411,18 +407,30 @@ 
    Source code for one.alf.cache
         if tables is None:
         tables = {}
         for name in ('datasets', 'sessions'):
-            tables[name], _ = parquet.load(cache_dir / f'{name}.pqt')
-    to_delete = []
+            table, m = parquet.load(cache_dir / f'{name}.pqt')
+            tables[name] = patch_cache(table, m.get('min_api_version'), name)
+
+    INDEX_KEY = '.?id'
+    for name in tables:
+        # Set the appropriate index if none already set
+        if isinstance(tables[name].index, pd.RangeIndex):
+            idx_columns = sorted(tables[name].filter(regex=INDEX_KEY).columns)
+            tables[name].set_index(idx_columns, inplace=True)
+
+    to_delete = set()
     gen_path = partial(session_record2path, root_dir=cache_dir)
-    sessions = sorted(map(lambda x: gen_path(x[1]), tables['sessions'].iterrows()))
+    # map of session path to eid
+    sessions = {gen_path(rec): eid for eid, rec in tables['sessions'].iterrows()}
     for session_path in iter_sessions(cache_dir):
-        rel_session_path = session_path.relative_to(cache_dir).as_posix()
-        datasets = tables['datasets'][tables['datasets']['session_path'] == rel_session_path]
+        try:
+            datasets = tables['datasets'].loc[sessions[session_path]]
+        except KeyError:
+            datasets = tables['datasets'].iloc[0:0, :]
         for dataset in iter_datasets(session_path):
             if dataset.as_posix() not in datasets['rel_path']:
-                to_delete.append(session_path.joinpath(dataset))
+                to_delete.add(session_path.joinpath(dataset))
         if session_path not in sessions and remove_empty_sessions:
-            to_delete.append(session_path)
+            to_delete.add(session_path)
 
     if dry:
         print('The following session and datasets would be removed:', end='\n\t')
diff --git a/_modules/one/alf/exceptions.html b/_modules/one/alf/exceptions.html
index 0a7954b9..acdbce66 100644
--- a/_modules/one/alf/exceptions.html
+++ b/_modules/one/alf/exceptions.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.alf.exceptions — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -107,7 +105,7 @@
            
    
              
   
    Source code for one.alf.exceptions
    -"""ALyx File related errors.
+"""ALyx File related errors and warnings.
 
 A set of Alyx and ALF related error classes which provide a more verbose description of the raised
 issues.
@@ -209,6 +207,14 @@ 
    Source code for one.alf.exceptions
                        'Multiple datasets in different revision folders were found with no default '
                    'specified.')
    
 
+
+
+
    
+[docs]
+class ALFWarning(Warning):
+    """Cautions when loading ALF datasets."""
+    pass
    
+
 
    
 
            
    
diff --git a/_modules/one/alf/files.html b/_modules/one/alf/files.html
index b54cd842..170f6723 100644
--- a/_modules/one/alf/files.html
+++ b/_modules/one/alf/files.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.alf.files — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/alf/io.html b/_modules/one/alf/io.html
index 12e00b4e..be5314cd 100644
--- a/_modules/one/alf/io.html
+++ b/_modules/one/alf/io.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.alf.io — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/alf/spec.html b/_modules/one/alf/spec.html
index 97ff0068..f0eb5555 100644
--- a/_modules/one/alf/spec.html
+++ b/_modules/one/alf/spec.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.alf.spec — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/api.html b/_modules/one/api.html
index 6c837113..e3f331bd 100644
--- a/_modules/one/api.html
+++ b/_modules/one/api.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.api — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -129,7 +127,7 @@ 
    Source code for one.api
     import packaging.version
 
 from iblutil.io import parquet, hashfile
-from iblutil.util import Bunch, flatten
+from iblutil.util import Bunch, flatten, ensure_list
 
 import one.params
 import one.webclient as wc
@@ -137,10 +135,10 @@ 
    Source code for one.api
     import one.alf.files as alfiles
 import one.alf.exceptions as alferr
 from .alf.cache import make_parquet_db, DATASETS_COLUMNS, SESSIONS_COLUMNS
-from .alf.spec import is_uuid_string, QC
+from .alf.spec import is_uuid_string, QC, to_alf
 from . import __version__
 from one.converters import ConversionMixin, session_record2path
-import one.util as util
+from one import util
 
 _logger = logging.getLogger(__name__)
 __all__ = ['ONE', 'One', 'OneAlyx']
@@ -247,7 +245,7 @@ 
    Source code for one.api
     
             # Set the appropriate index if none already set
             if isinstance(cache.index, pd.RangeIndex):
-                idx_columns = cache.filter(regex=INDEX_KEY).columns.tolist()
+                idx_columns = sorted(cache.filter(regex=INDEX_KEY).columns)
                 if len(idx_columns) == 0:
                     raise KeyError('Failed to set index')
                 cache.set_index(idx_columns, inplace=True)
@@ -410,9 +408,10 @@ 
    Source code for one.api
                 if not strict:
                 # Deal with case where there are extra columns in the cache
                 extra_columns = set(self._cache[table].columns) - set(records.columns)
-                for col in extra_columns:
-                    n = list(self._cache[table].columns).index(col)
-                    records.insert(n, col, np.nan)
+                column_ids = map(list(self._cache[table].columns).index, extra_columns)
+                for col, n in sorted(zip(extra_columns, column_ids), key=lambda x: x[1]):
+                    val = records.get('exists', True) if col.startswith('exists_') else np.nan
+                    records.insert(n, col, val)
                 # Drop any extra columns in the records that aren't in cache table
                 to_drop = set(records.columns) - set(self._cache[table].columns)
                 records.drop(to_drop, axis=1, inplace=True)
@@ -425,7 +424,8 @@ 
    Source code for one.api
                 to_assign = records[~to_update]
             if isinstance(self._cache[table].index, pd.MultiIndex) and not to_assign.empty:
                 # Concatenate and sort (no other way for non-unique index within MultiIndex)
-                self._cache[table] = pd.concat([self._cache[table], to_assign]).sort_index()
+                frames = filter(lambda x: not x.empty, [self._cache[table], to_assign])
+                self._cache[table] = pd.concat(frames).sort_index()
             else:
                 for index, record in to_assign.iterrows():
                     self._cache[table].loc[index, :] = record[self._cache[table].columns].values
@@ -629,7 +629,7 @@ 
    Source code for one.api
                     return ([], None) if details else []
             # String fields
             elif key in ('subject', 'task_protocol', 'laboratory', 'projects'):
-                query = '|'.join(util.ensure_list(value))
+                query = '|'.join(ensure_list(value))
                 key = 'lab' if key == 'laboratory' else key
                 mask = sessions[key].str.contains(query, regex=self.wildcards)
                 sessions = sessions[mask.astype(bool, copy=False)]
@@ -638,7 +638,7 @@ 
    Source code for one.api
                     session_date = pd.to_datetime(sessions['date'])
                 sessions = sessions[(session_date >= start) & (session_date <= end)]
             elif key == 'number':
-                query = util.ensure_list(value)
+                query = ensure_list(value)
                 sessions = sessions[sessions[key].isin(map(int, query))]
             # Dataset/QC check is biggest so this should be done last
             elif key == 'dataset' or (key == 'dataset_qc_lte' and 'dataset' not in queries):
@@ -646,7 +646,7 @@ 
    Source code for one.api
                     qc = QC.validate(queries.get('dataset_qc_lte', 'FAIL')).name  # validate value
                 has_dset = sessions.index.isin(datasets.index.get_level_values('eid'))
                 datasets = datasets.loc[(sessions.index.values[has_dset], ), :]
-                query = util.ensure_list(value if key == 'dataset' else '')
+                query = ensure_list(value if key == 'dataset' else '')
                 # For each session check any dataset both contains query and exists
                 mask = (
                     (datasets
@@ -679,9 +679,8 @@ 
    Source code for one.api
     
         Given a set of datasets, check whether records correctly reflect the filesystem.
         Called by load methods, this returns a list of file paths to load and return.
-        TODO This needs changing; overload for downloading?
-         This changes datasets frame, calls _update_cache(sessions=None, datasets=None) to
-         update and save tables.  Download_datasets can also call this function.
+        This changes datasets frame, calls _update_cache(sessions=None, datasets=None) to
+        update and save tables.  Download_datasets may also call this function.
 
         Parameters
         ----------
@@ -702,12 +701,18 @@ 
    Source code for one.api
             """
         if isinstance(datasets, pd.Series):
             datasets = pd.DataFrame([datasets])
+            assert datasets.index.nlevels <= 2
+            idx_names = ['eid', 'id'] if datasets.index.nlevels == 2 else ['id']
+            datasets.index.set_names(idx_names, inplace=True)
         elif not isinstance(datasets, pd.DataFrame):
             # Cast set of dicts (i.e. from REST datasets endpoint)
             datasets = util.datasets2records(list(datasets))
+        else:
+            datasets = datasets.copy()
         indices_to_download = []  # indices of datasets that need (re)downloading
         files = []  # file path list to return
         # If the session_path field is missing from the datasets table, fetch from sessions table
+        # Typically only aggregate frames contain this column
         if 'session_path' not in datasets.columns:
             if 'eid' not in datasets.index.names:
                 # Get slice of full frame with eid in index
@@ -748,20 +753,6 @@ 
    Source code for one.api
                     files.append(None)
                 # Add this index to list of datasets that need downloading
                 indices_to_download.append(i)
-            if rec['exists'] != file.exists():
-                with warnings.catch_warnings():
-                    # Suppress future warning: exist column should always be present
-                    msg = '.*indexing on a MultiIndex with a nested sequence of labels.*'
-                    warnings.filterwarnings('ignore', message=msg)
-                    datasets.at[i, 'exists'] = not rec['exists']
-                    if update_exists:
-                        _logger.debug('Updating exists field')
-                        if isinstance(i, tuple):
-                            self._cache['datasets'].loc[i, 'exists'] = not rec['exists']
-                        else:  # eid index level missing in datasets input
-                            i = pd.IndexSlice[:, i]
-                            self._cache['datasets'].loc[i, 'exists'] = not rec['exists']
-                        self._cache['_meta']['modified_time'] = datetime.now()
 
         # If online and we have datasets to download, call download_datasets with these datasets
         if not (offline or self.offline) and indices_to_download:
@@ -772,14 +763,32 @@ 
    Source code for one.api
                 for i, file in zip(indices_to_download, new_files):
                 files[datasets.index.get_loc(i)] = file
 
+        # NB: Currently if not offline and a remote file is missing, an exception will be raised
+        # before we reach this point. This could change in the future.
+        exists = list(map(bool, files))
+        if not all(datasets['exists'] == exists):
+            with warnings.catch_warnings():
+                # Suppress future warning: exist column should always be present
+                msg = '.*indexing on a MultiIndex with a nested sequence of labels.*'
+                warnings.filterwarnings('ignore', message=msg)
+                datasets['exists'] = exists
+                if update_exists:
+                    _logger.debug('Updating exists field')
+                    i = datasets.index
+                    if i.nlevels == 1:
+                        # eid index level missing in datasets input
+                        i = pd.IndexSlice[:, i]
+                    self._cache['datasets'].loc[i, 'exists'] = exists
+                    self._cache['_meta']['modified_time'] = datetime.now()
+
         if self.record_loaded:
             loaded = np.fromiter(map(bool, files), bool)
-            loaded_ids = np.array(datasets.index.to_list())[loaded]
+            loaded_ids = datasets.index.get_level_values('id')[loaded].to_numpy()
             if '_loaded_datasets' not in self._cache:
                 self._cache['_loaded_datasets'] = np.unique(loaded_ids)
             else:
                 loaded_set = np.hstack([self._cache['_loaded_datasets'], loaded_ids])
-                self._cache['_loaded_datasets'] = np.unique(loaded_set, axis=0)
+                self._cache['_loaded_datasets'] = np.unique(loaded_set)
 
         # Return full list of file paths
         return files
@@ -838,7 +847,7 @@ 
    Source code for one.api
         @util.refresh
     def list_datasets(
             self, eid=None, filename=None, collection=None, revision=None, qc=QC.FAIL,
-            ignore_qc_not_set=False, details=False, query_type=None
+            ignore_qc_not_set=False, details=False, query_type=None, default_revisions_only=False
     ) -> Union[np.ndarray, pd.DataFrame]:
         """
         Given an eid, return the datasets for those sessions.
@@ -871,6 +880,9 @@ 
    Source code for one.api
                 relative paths (collection/revision/filename) - see one.alf.spec.describe for details.
         query_type : str
             Query cache ('local') or Alyx database ('remote').
+        default_revisions_only : bool
+            When true, only matching datasets that are considered default revisions are returned.
+            If no 'default_revision' column is present, and ALFError is raised.
 
         Returns
         -------
@@ -900,6 +912,11 @@ 
    Source code for one.api
             >>> datasets = one.list_datasets(eid, {'object': ['wheel', 'trial?']})
         """
         datasets = self._cache['datasets']
+        if default_revisions_only:
+            if 'default_revision' not in datasets.columns:
+                raise alferr.ALFError('No default revisions specified')
+            datasets = datasets[datasets['default_revision']]
+
         filter_args = dict(
             collection=collection, filename=filename, wildcards=self.wildcards, revision=revision,
             revision_last_before=False, assert_unique=False, qc=qc,
@@ -1149,6 +1166,9 @@ 
    Source code for one.api
     
         # For those that don't exist, download them
         offline = None if query_type == 'auto' else self.mode == 'local'
+        if datasets.index.nlevels == 1:
+            # Reinstate eid index
+            datasets = pd.concat({str(eid): datasets}, names=['eid'])
         files = self._check_filesystem(datasets, offline=offline, check_hash=check_hash)
         files = [x for x in files if x]
         if not files:
@@ -1256,6 +1276,9 @@ 
    Source code for one.api
                                             wildcards=self.wildcards, assert_unique=assert_unique)
         if len(datasets) == 0:
             raise alferr.ALFObjectNotFound(f'Dataset "{dataset}" not found')
+        if datasets.index.nlevels == 1:
+            # Reinstate eid index
+            datasets = pd.concat({str(eid): datasets}, names=['eid'])
 
         # Check files exist / download remote files
         offline = None if query_type == 'auto' else self.mode == 'local'
@@ -1282,9 +1305,11 @@ 
    Source code for one.api
                           download_only: bool = False,
                       check_hash: bool = True) -> Any:
         """
-        Load datasets for a given session id.  Returns two lists the length of datasets.  The
-        first is the data (or file paths if download_data is false), the second is a list of
-        meta data Bunches.  If assert_present is false, missing data will be returned as None.
+        Load datasets for a given session id.
+
+        Returns two lists the length of datasets.  The first is the data (or file paths if
+        download_data is false), the second is a list of meta data Bunches.  If assert_present is
+        false, missing data will be returned as None.
 
         Parameters
         ----------
@@ -1316,9 +1341,9 @@ 
    Source code for one.api
             Returns
         -------
         list
-            A list of data (or file paths) the length of datasets
+            A list of data (or file paths) the length of datasets.
         list
-            A list of meta data Bunches. If assert_present is False, missing data will be None
+            A list of meta data Bunches. If assert_present is False, missing data will be None.
 
         Notes
         -----
@@ -1330,6 +1355,8 @@ 
    Source code for one.api
               revision as separate keyword arguments.
         - To ensure you are loading the correct revision, use the revisions kwarg instead of
           relative paths.
+        - To load an exact revision (i.e. not the last revision before a given date), pass in
+          a list of relative paths or a data frame.
 
         Raises
         ------
@@ -1372,8 +1399,25 @@ 
    Source code for one.api
     
         if isinstance(datasets, str):
             raise TypeError('`datasets` must be a non-string iterable')
-        # Check input args
-        collections, revisions = _verify_specifiers([collections, revisions])
+
+        # Check if rel paths have been used (e.g. the output of list_datasets)
+        is_frame = isinstance(datasets, pd.DataFrame)
+        if is_rel_paths := (is_frame or any('/' in x for x in datasets)):
+            if not (collections, revisions) == (None, None):
+                raise ValueError(
+                    'collection and revision kwargs must be None when dataset is a relative path')
+            if is_frame:
+                if 'eid' in datasets.index.names:
+                    assert set(datasets.index.get_level_values('eid')) == {eid}
+                datasets = datasets['rel_path'].tolist()
+            datasets = list(map(partial(alfiles.rel_path_parts, as_dict=True), datasets))
+            if len(datasets) > 0:
+                # Extract collection and revision from each of the parsed datasets
+                # None -> '' ensures exact collections and revisions are used in filter
+                # NB: f user passes in dicts, any collection/revision keys will be ignored.
+                collections, revisions = zip(
+                    *((x.pop('collection') or '', x.pop('revision') or '') for x in datasets)
+                )
 
         # Short circuit
         query_type = query_type or self.mode
@@ -1387,35 +1431,49 @@ 
    Source code for one.api
             if len(datasets) == 0:
             return None, all_datasets.iloc[0:0]  # Return empty
 
-        # Filter and load missing
-        if self.wildcards:  # Append extension wildcard if 'object.attribute' string
-            datasets = [x + ('.*' if isinstance(x, str) and len(x.split('.')) == 2 else '')
-                        for x in datasets]
+        # More input validation
+        input_types = [(isinstance(x, str), isinstance(x, dict)) for x in datasets]
+        if not all(map(any, input_types)) or not any(map(all, zip(*input_types))):
+            raise ValueError('`datasets` must be iterable of only str or only dicts')
+        if self.wildcards and input_types[0][0]:  # if wildcards and input is iter of str
+            # Append extension wildcard if 'object.attribute' string
+            datasets = [
+                x + ('.*' if isinstance(x, str) and len(x.split('.')) == 2 else '')
+                for x in datasets
+            ]
+
+        # Check input args
+        collections, revisions = _verify_specifiers([collections, revisions])
+
         # If collections provided in datasets list, e.g. [collection/x.y.z], do not assert unique
-        validate = not any(('/' if isinstance(d, str) else 'collection') in d for d in datasets)
-        if not validate and not all(x is None for x in collections + revisions):
-            raise ValueError(
-                'collection and revision kwargs must be None when dataset is a relative path')
-        ops = dict(wildcards=self.wildcards, assert_unique=validate)
+        # If not a dataframe, use revision last before (we've asserted no revision in rel_path)
+        ops = dict(
+            wildcards=self.wildcards, assert_unique=True, revision_last_before=not is_rel_paths)
         slices = [util.filter_datasets(all_datasets, x, y, z, **ops)
                   for x, y, z in zip(datasets, collections, revisions)]
         present = [len(x) == 1 for x in slices]
         present_datasets = pd.concat(slices)
+        if present_datasets.index.nlevels == 1:
+            # Reinstate eid index
+            present_datasets = pd.concat({str(eid): present_datasets}, names=['eid'])
 
         # Check if user is blindly downloading all data and warn of non-default revisions
         if 'default_revision' in present_datasets and \
-                not any(revisions) and not all(present_datasets['default_revision']):
+                is_rel_paths and not all(present_datasets['default_revision']):
             old = present_datasets.loc[~present_datasets['default_revision'], 'rel_path'].to_list()
             warnings.warn(
                 'The following datasets may have been revised and ' +
                 'are therefore not recommended for analysis:\n\t' +
                 '\n\t'.join(old) + '\n'
-                'To avoid this warning, specify the revision as a kwarg or use load_dataset.'
+                'To avoid this warning, specify the revision as a kwarg or use load_dataset.',
+                alferr.ALFWarning
             )
 
         if not all(present):
-            missing_list = ', '.join(x for x, y in zip(datasets, present) if not y)
-            # FIXME include collection and revision also
+            missing_list = (x if isinstance(x, str) else to_alf(**x) for x in datasets)
+            missing_list = ('/'.join(filter(None, [c, f'#{r}#' if r else None, d]))
+                            for c, r, d in zip(collections, revisions, missing_list))
+            missing_list = ', '.join(x for x, y in zip(missing_list, present) if not y)
             message = f'The following datasets are not in the cache: {missing_list}'
             if assert_present:
                 raise alferr.ALFObjectNotFound(message)
@@ -1436,7 +1494,7 @@ 
    Source code for one.api
     
         # Make list of metadata Bunches out of the table
         records = (present_datasets
-                   .reset_index(names='id')
+                   .reset_index(names=['eid', 'id'])
                    .to_dict('records', into=Bunch))
 
         # Ensure result same length as input datasets list
@@ -1575,6 +1633,9 @@ 
    Source code for one.api
             if len(datasets) == 0:
             raise alferr.ALFObjectNotFound(object or '')
         parts = [alfiles.rel_path_parts(x) for x in datasets.rel_path]
+        if datasets.index.nlevels == 1:
+            # Reinstate eid index
+            datasets = pd.concat({str(eid): datasets}, names=['eid'])
 
         # For those that don't exist, download them
         offline = None if query_type == 'auto' else self.mode == 'local'
@@ -1945,11 +2006,11 @@ 
    Source code for one.api
         @util.refresh
     def list_datasets(
             self, eid=None, filename=None, collection=None, revision=None, qc=QC.FAIL,
-            ignore_qc_not_set=False, details=False, query_type=None
+            ignore_qc_not_set=False, details=False, query_type=None, default_revisions_only=False
     ) -> Union[np.ndarray, pd.DataFrame]:
         filters = dict(
-            collection=collection, filename=filename, revision=revision,
-            qc=qc, ignore_qc_not_set=ignore_qc_not_set)
+            collection=collection, filename=filename, revision=revision, qc=qc,
+            ignore_qc_not_set=ignore_qc_not_set, default_revisions_only=default_revisions_only)
         if (query_type or self.mode) != 'remote':
             return super().list_datasets(eid, details=details, query_type=query_type, **filters)
         elif not eid:
@@ -1964,6 +2025,7 @@ 
    Source code for one.api
             if datasets is None or datasets.empty:
             return self._cache['datasets'].iloc[0:0] if details else []  # Return empty
         assert set(datasets.index.unique('eid')) == {eid}
+        del filters['default_revisions_only']
         datasets = util.filter_datasets(
             datasets.droplevel('eid'), assert_unique=False, wildcards=self.wildcards, **filters)
         # Return only the relative path
@@ -2007,8 +2069,7 @@ 
    Source code for one.api
             all_aggregates = self.alyx.rest('datasets', 'list', django=query)
         records = (util.datasets2records(all_aggregates)
                    .reset_index(level=0)
-                   .drop('eid', axis=1)
-                   .rename_axis(index={'id': 'did'}))
+                   .drop('eid', axis=1))
         # Since rel_path for public FI file records starts with 'public/aggregates' instead of just
         # 'aggregates', we should discard the file path parts before 'aggregates' (if present)
         records['rel_path'] = records['rel_path'].str.replace(
@@ -2029,11 +2090,6 @@ 
    Source code for one.api
                 # NB: We avoid exact matches as most users will only include subject, not lab/subject
             records = records[records['identifier'].str.contains(identifier)]
 
-        # Add exists_aws field for download method
-        for i, rec in records.iterrows():
-            fr = next(x['file_records'] for x in all_aggregates if x['url'].endswith(i))
-            records.loc[i, 'exists_aws'] = any(
-                x['data_repository'].startswith('aws') and x['exists'] for x in fr)
         return util.filter_datasets(records, filename=dataset, revision=revision,
                                     wildcards=True, assert_unique=assert_unique)
    
 
@@ -2092,6 +2148,7 @@ 
    Source code for one.api
                 raise alferr.ALFObjectNotFound(
                 f'{dataset or "dataset"} not found for {relation}/{identifier}')
         # update_exists=False because these datasets are not in the cache table
+        records['session_path'] = ''  # explicitly add session path column
         file, = self._check_filesystem(records, update_exists=False)
         if not file:
             raise alferr.ALFObjectNotFound('Dataset file not found on disk')
@@ -2409,7 +2466,7 @@ 
    Source code for one.api
     
         def _add_date(records):
             """Add date field for compatibility with One.search output."""
-            for s in util.ensure_list(records):
+            for s in ensure_list(records):
                 s['date'] = datetime.fromisoformat(s['start_time']).date()
             return records
 
@@ -2441,9 +2498,12 @@ 
    Source code for one.api
             try:
             if not isinstance(dsets, pd.DataFrame):
                 raise TypeError('Input datasets must be a pandas data frame for AWS download.')
-            if 'exists_aws' in dsets and np.all(np.equal(dsets['exists_aws'].values, True)):
-                _logger.info('Downloading from AWS')
-                return self._download_aws(map(lambda x: x[1], dsets.iterrows()), **kwargs)
+            assert 'exists_aws' not in dsets or np.all(np.equal(dsets['exists_aws'].values, True))
+            _logger.debug('Downloading from AWS')
+            files = self._download_aws(map(lambda x: x[1], dsets.iterrows()), **kwargs)
+            # Trigger fallback download of any files missing on AWS
+            assert all(files), f'{sum(map(bool, files))} datasets not found on AWS'
+            return files
         except Exception as ex:
             _logger.debug(ex)
         return self._download_dataset(dsets, **kwargs)
@@ -2479,7 +2539,7 @@ 
    Source code for one.api
             assert self.mode != 'local'
         # Get all dataset URLs
         dsets = list(dsets)  # Ensure not generator
-        uuids = [util.ensure_list(x.name)[-1] for x in dsets]
+        uuids = [ensure_list(x.name)[-1] for x in dsets]
         # If number of UUIDs is too high, fetch in loop to avoid 414 HTTP status code
         remote_records = []
         N = 100  # Number of UUIDs per query
@@ -2493,15 +2553,18 @@ 
    Source code for one.api
                 # Fetch file record path
             record = next((x for x in record['file_records']
                            if x['data_repository'].startswith('aws') and x['exists']), None)
-            if not record and update_exists and 'exists_aws' in self._cache['datasets']:
-                _logger.debug('Updating exists field')
-                self._cache['datasets'].loc[(slice(None), uuid), 'exists_aws'] = False
-                self._cache['_meta']['modified_time'] = datetime.now()
+            if not record:
+                if update_exists and 'exists_aws' in self._cache['datasets']:
+                    _logger.debug('Updating exists field')
+                    self._cache['datasets'].loc[(slice(None), uuid), 'exists_aws'] = False
+                    self._cache['_meta']['modified_time'] = datetime.now()
                 out_files.append(None)
                 continue
+            assert record['relative_path'].endswith(dset['rel_path']), \
+                f'Relative path for dataset {uuid} does not match Alyx record'
             source_path = PurePosixPath(record['data_repository_path'], record['relative_path'])
             source_path = alfiles.add_uuid_string(source_path, uuid)
-            local_path = self.cache_dir.joinpath(dset['session_path'], dset['rel_path'])
+            local_path = self.cache_dir.joinpath(record['relative_path'])
             if keep_uuid is True or (keep_uuid is None and self.uuid_filenames is True):
                 local_path = alfiles.add_uuid_string(local_path, uuid)
             local_path.parent.mkdir(exist_ok=True, parents=True)
@@ -2550,7 +2613,7 @@ 
    Source code for one.api
                     did = dset['id']
             elif 'file_records' not in dset:  # Convert dataset Series to alyx dataset dict
                 url = self.record2url(dset)  # NB: URL will always be returned but may not exist
-                did = util.ensure_list(dset.name)[-1]
+                did = ensure_list(dset.name)[-1]
             else:  # from datasets endpoint
                 repo = getattr(getattr(self._web_client, '_par', None), 'HTTP_DATA_SERVER', None)
                 url = next(
@@ -2564,7 +2627,7 @@ 
    Source code for one.api
                 _logger.debug('Updating cache')
             # NB: This will be considerably easier when IndexSlice supports Ellipsis
             idx = [slice(None)] * int(self._cache['datasets'].index.nlevels / 2)
-            self._cache['datasets'].loc[(*idx, *util.ensure_list(did)), 'exists'] = False
+            self._cache['datasets'].loc[(*idx, *ensure_list(did)), 'exists'] = False
             self._cache['_meta']['modified_time'] = datetime.now()
 
         return url
@@ -2658,7 +2721,7 @@ 
    Source code for one.api
             """
         assert not self.offline
         # Ensure all target directories exist
-        [Path(x).mkdir(parents=True, exist_ok=True) for x in set(util.ensure_list(target_dir))]
+        [Path(x).mkdir(parents=True, exist_ok=True) for x in set(ensure_list(target_dir))]
 
         # download file(s) from url(s), returns file path(s) with UUID
         local_path, md5 = self.alyx.download_file(url, target_dir=target_dir, return_md5=True)
@@ -2667,7 +2730,7 @@ 
    Source code for one.api
             if isinstance(url, (tuple, list)):
             assert (file_size is None) or len(file_size) == len(url)
             assert (hash is None) or len(hash) == len(url)
-        for args in zip(*map(util.ensure_list, (file_size, md5, hash, local_path, url))):
+        for args in zip(*map(ensure_list, (file_size, md5, hash, local_path, url))):
             self._check_hash_and_file_size_mismatch(*args)
 
         # check if we are keeping the uuid on the list of file names
diff --git a/_modules/one/converters.html b/_modules/one/converters.html
index cd6c3235..578c7943 100644
--- a/_modules/one/converters.html
+++ b/_modules/one/converters.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.converters — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -122,15 +120,14 @@ 
    Source code for one.converters
     from uuid import UUID
 from inspect import unwrap
 from pathlib import Path, PurePosixPath
-from urllib.parse import urlsplit
 from typing import Optional, Union, Mapping, List, Iterable as Iter
 
 import pandas as pd
 from iblutil.util import Bunch
 
 from one.alf.spec import is_session_path, is_uuid_string
-from one.alf.files import get_session_path, add_uuid_string, session_path_parts, remove_uuid_string
-from .util import Listable, ensure_list
+from one.alf.files import get_session_path, add_uuid_string, session_path_parts, get_alf_path
+from .util import Listable
 
 
 
    
@@ -360,39 +357,43 @@ 
    Source code for one.converters
                 A cache file record
         """
         is_session = is_session_path(path)
-        rec = self._cache['sessions' if is_session else 'datasets']
-        if rec.empty:
-            return
-        # if (rec := self._cache['datasets']).empty:  # py 3.8
-        #     return
+        if self._cache['sessions' if is_session else 'datasets'].empty:
+            return  # short circuit: no records in the cache
 
         if is_session_path(path):
             lab, subject, date, number = session_path_parts(path)
-            rec = rec[
-                (rec['lab'] == lab) & (rec['subject'] == subject) &
-                (rec['number'] == int(number)) &
-                (rec['date'] == datetime.date.fromisoformat(date))
+            df = self._cache['sessions']
+            rec = df[
+                (df['lab'] == lab) & (df['subject'] == subject) &
+                (df['number'] == int(number)) &
+                (df['date'] == datetime.date.fromisoformat(date))
             ]
             return None if rec.empty else rec.squeeze()
 
-        # Deal with file path
-        if isinstance(path, str) and path.startswith('http'):
-            # Remove the UUID from path
-            path = urlsplit(path).path.strip('/')
-            path = remove_uuid_string(PurePosixPath(path))
-            session_path = get_session_path(path).as_posix()
-        else:
-            # No way of knowing root session path parts without cache tables
-            eid = self.path2eid(path)
-            session_series = self.list_datasets(eid, details=True).session_path
-            if not eid or session_series.empty:
+        # Deal with dataset path
+        if isinstance(path, str):
+            path = Path(path)
+        # If there's a UUID in the path, use that to fetch the record
+        name_parts = path.stem.split('.')
+        if is_uuid_string(uuid := name_parts[-1]):
+            try:
+                return self._cache['datasets'].loc[pd.IndexSlice[:, uuid], :].squeeze()
+            except KeyError:
                 return
-            session_path, *_ = session_series
 
-        rec = rec[rec['session_path'] == session_path]
-        rec = rec[rec['rel_path'].apply(lambda x: path.as_posix().endswith(x))]
+        # Fetch via session record
+        eid = self.path2eid(path)
+        df = self.list_datasets(eid, details=True)
+        if not eid or df.empty:
+            return
+
+        # Find row where relative path matches
+        rec = df[df['rel_path'] == path.relative_to(get_session_path(path)).as_posix()]
         assert len(rec) < 2, 'Multiple records found'
-        return None if rec.empty else rec.squeeze()
    
+        if rec.empty:
+            return None
+        # Convert slice to series and reinstate eid index if dropped
+        return rec.squeeze().rename(index=(eid, rec.index.get_level_values('id')[0]))
    
 
 
 
    
@@ -447,13 +448,13 @@ 
    Source code for one.converters
                     session_spec = '{lab}/Subjects/{subject}/{date}/{number:03d}'
                 url = record.get('session_path') or session_spec.format(**record)
                 return webclient.rel_path2url(url)
-            uuid = ensure_list(record.name)[-1]  # may be (eid, did) or simply did
         else:
             raise TypeError(
                 f'record must be pandas.DataFrame or pandas.Series, got {type(record)} instead')
-
-        session_path, rel_path = record[['session_path', 'rel_path']].to_numpy().flatten()
-        url = PurePosixPath(session_path, rel_path)
+        assert isinstance(record.name, tuple) and len(record.name) == 2
+        eid, uuid = record.name  # must be (eid, did)
+        session_path = self.eid2path(eid)
+        url = PurePosixPath(get_alf_path(session_path), record['rel_path'])
         return webclient.rel_path2url(add_uuid_string(url, uuid).as_posix())
    
 
 
@@ -461,8 +462,7 @@ 
    Source code for one.converters
     [docs]
     def record2path(self, dataset) -> Optional[Path]:
         """
-        Given a set of dataset records, checks the corresponding exists flag in the cache
-        correctly reflects the files system.
+        Given a set of dataset records, returns the corresponding paths
 
         Parameters
         ----------
@@ -474,13 +474,19 @@ 
    Source code for one.converters
             pathlib.Path
             File path for the record
         """
-        assert isinstance(dataset, pd.Series) or len(dataset) == 1
-        session_path, rel_path = dataset[['session_path', 'rel_path']].to_numpy().flatten()
-        file = Path(self.cache_dir, session_path, rel_path)
+        if isinstance(dataset, pd.DataFrame):
+            return [self.record2path(r) for _, r in dataset.iterrows()]
+        elif not isinstance(dataset, pd.Series):
+            raise TypeError(
+                f'record must be pandas.DataFrame or pandas.Series, got {type(dataset)} instead')
+        assert isinstance(dataset.name, tuple) and len(dataset.name) == 2
+        eid, uuid = dataset.name  # must be (eid, did)
+        if not (session_path := self.eid2path(eid)):
+            raise ValueError(f'Failed to determine session path for eid "{eid}"')
+        file = session_path / dataset['rel_path']
         if self.uuid_filenames:
-            i = dataset.name if isinstance(dataset, pd.Series) else dataset.index[0]
-            file = add_uuid_string(file, i[1] if isinstance(i, tuple) else i)
-        return file  # files[0] if len(datasets) == 1 else files
    
+            file = add_uuid_string(file, uuid)
+        return file
    
 
 
 
    
diff --git a/_modules/one/params.html b/_modules/one/params.html
index 85caca7e..aa5b467a 100644
--- a/_modules/one/params.html
+++ b/_modules/one/params.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.params — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -272,7 +270,8 @@ 
    Source code for one.params
     
         # Prompt for cache directory (default may have changed after prompt)
         client_key = _key_from_url(par.ALYX_URL)
-        cache_dir = cache_dir or Path(CACHE_DIR_DEFAULT, client_key)
+        def_cache_dir = cache_map.CLIENT_MAP.get(client_key) or Path(CACHE_DIR_DEFAULT, client_key)
+        cache_dir = cache_dir or def_cache_dir
         prompt = f'Enter the location of the download cache, current value is ["{cache_dir}"]:'
         cache_dir = input(prompt) or cache_dir
 
@@ -299,7 +298,9 @@ 
    Source code for one.params
             # Precedence: user provided cache_dir; previously defined; the default location
         default_cache_dir = Path(CACHE_DIR_DEFAULT, client_key)
         cache_dir = cache_dir or cache_map.CLIENT_MAP.get(client_key, default_cache_dir)
-        par = par_current
+        # Use current params but drop any extras (such as the TOKEN or ALYX_PWD field)
+        keep_keys = par_default.as_dict().keys()
+        par = iopar.from_dict({k: v for k, v in par_current.as_dict().items() if k in keep_keys})
         if any(v for k, v in cache_map.CLIENT_MAP.items() if k != client_key and v == cache_dir):
             warnings.warn('Warning: the directory provided is already a cache for another URL.')
 
diff --git a/_modules/one/registration.html b/_modules/one/registration.html
index 53bb8080..ca5bbc32 100644
--- a/_modules/one/registration.html
+++ b/_modules/one/registration.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.registration — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -132,14 +130,13 @@ 
    Source code for one.registration
     import requests.exceptions
 
 from iblutil.io import hashfile
-from iblutil.util import Bunch
+from iblutil.util import Bunch, ensure_list
 
 import one.alf.io as alfio
 from one.alf.files import session_path_parts, get_session_path, folder_parts, filename_parts
 from one.alf.spec import is_valid
 import one.alf.exceptions as alferr
 from one.api import ONE
-from one.util import ensure_list
 from one.webclient import no_cache
 
 _logger = logging.getLogger(__name__)
diff --git a/_modules/one/remote/aws.html b/_modules/one/remote/aws.html
index 35b16890..a190bb21 100644
--- a/_modules/one/remote/aws.html
+++ b/_modules/one/remote/aws.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.remote.aws — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/remote/base.html b/_modules/one/remote/base.html
index d1b43b86..9a5bcd9b 100644
--- a/_modules/one/remote/base.html
+++ b/_modules/one/remote/base.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.remote.base — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/remote/globus.html b/_modules/one/remote/globus.html
index fcf441c4..249e3a08 100644
--- a/_modules/one/remote/globus.html
+++ b/_modules/one/remote/globus.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.remote.globus — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -206,12 +204,12 @@ 
    Source code for one.remote.globus
     from globus_sdk import TransferAPIError, GlobusAPIError, NetworkError, GlobusTimeoutError, \
     GlobusConnectionError, GlobusConnectionTimeoutError, GlobusSDKUsageError, NullAuthorizer
 from iblutil.io import params as iopar
+from iblutil.util import ensure_list
 
 from one.alf.spec import is_uuid
 from one.alf.files import remove_uuid_string
 import one.params
 from one.webclient import AlyxClient
-from one.util import ensure_list
 from .base import DownloadClient, load_client_params, save_client_params
 
 __all__ = ['Globus', 'get_lab_from_endpoint_id', 'as_globus_path']
diff --git a/_modules/one/tests/alf/test_alf_files.html b/_modules/one/tests/alf/test_alf_files.html
index 7b13153b..74e22617 100644
--- a/_modules/one/tests/alf/test_alf_files.html
+++ b/_modules/one/tests/alf/test_alf_files.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.alf.test_alf_files — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/tests/alf/test_alf_io.html b/_modules/one/tests/alf/test_alf_io.html
index 9e99833b..fc571b7f 100644
--- a/_modules/one/tests/alf/test_alf_io.html
+++ b/_modules/one/tests/alf/test_alf_io.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.alf.test_alf_io — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -966,7 +964,7 @@ 
    Source code for one.tests.alf.test_alf_io
                 self.session_path.joinpath(f'bar.baz_y.{uuid.uuid4()}.npy'),
             self.session_path.joinpath('#2021-01-01#', f'bar.baz.{uuid.uuid4()}.npy'),
             self.session_path.joinpath('task_00', 'x.y.z'),
-            self.session_path.joinpath('x.y.z'),
+            self.session_path.joinpath('x.y.z')
         ]
         for f in self.dsets:
             f.parent.mkdir(exist_ok=True, parents=True)
diff --git a/_modules/one/tests/alf/test_alf_spec.html b/_modules/one/tests/alf/test_alf_spec.html
index f703c045..7d443373 100644
--- a/_modules/one/tests/alf/test_alf_spec.html
+++ b/_modules/one/tests/alf/test_alf_spec.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.alf.test_alf_spec — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/tests/alf/test_cache.html b/_modules/one/tests/alf/test_cache.html
index 23650d23..73e75c0f 100644
--- a/_modules/one/tests/alf/test_cache.html
+++ b/_modules/one/tests/alf/test_cache.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.alf.test_cache — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -206,7 +204,6 @@ 
    Source code for one.tests.alf.test_cache
             print('Datasets dataframe')
         print(df)
         dset_info = df.loc[0].to_dict()
-        self.assertEqual(dset_info['session_path'], self.rel_ses_path[:-1])
         self.assertEqual(dset_info['rel_path'], self.rel_ses_files[0].as_posix())
         self.assertTrue(dset_info['file_size'] > 0)
         self.assertFalse(df.rel_path.str.contains('invalid').any())
    
@@ -228,7 +225,6 @@ 
    Source code for one.tests.alf.test_cache
             df_dsets, metadata2 = parquet.load(fn_dsets)
         self.assertEqual(metadata2, metadata_exp)
         dset_info = df_dsets.loc[0].to_dict()
-        self.assertEqual(dset_info['session_path'], self.rel_ses_path[:-1])
         self.assertEqual(dset_info['rel_path'], self.rel_ses_files[0].as_posix())
 
         # Check behaviour when no files found
@@ -243,12 +239,9 @@ 
    Source code for one.tests.alf.test_cache
                 apt.make_parquet_db(self.tmpdir, hash_ids=False, lab='another')
 
         # Create some more datasets in a session folder outside of a lab directory
-        dsets = revisions_datasets_table()
         with tempfile.TemporaryDirectory() as tdir:
-            for session_path, rel_path in dsets[['session_path', 'rel_path']].values:
-                filepath = Path(tdir).joinpath(session_path, rel_path)
-                filepath.parent.mkdir(exist_ok=True, parents=True)
-                filepath.touch()
+            session_path = Path(tdir).joinpath('subject', '1900-01-01', '001')
+            _ = revisions_datasets_table(touch_path=session_path)  # create some files
             fn_ses, _ = apt.make_parquet_db(tdir, hash_ids=False, lab='another')
             df_ses, _ = parquet.load(fn_ses)
             self.assertTrue((df_ses['lab'] == 'another').all())
    
diff --git a/_modules/one/tests/remote/test_aws.html b/_modules/one/tests/remote/test_aws.html
index 4b09e950..68015dc5 100644
--- a/_modules/one/tests/remote/test_aws.html
+++ b/_modules/one/tests/remote/test_aws.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.remote.test_aws — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/tests/remote/test_base.html b/_modules/one/tests/remote/test_base.html
index e1e30428..0695539e 100644
--- a/_modules/one/tests/remote/test_base.html
+++ b/_modules/one/tests/remote/test_base.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.remote.test_base — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/tests/remote/test_globus.html b/_modules/one/tests/remote/test_globus.html
index 91b7d6ba..43fc6204 100644
--- a/_modules/one/tests/remote/test_globus.html
+++ b/_modules/one/tests/remote/test_globus.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.remote.test_globus — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -229,7 +227,7 @@ 
    Source code for one.tests.remote.test_globus
    # Only test this on windows
         if sys.platform == 'win32':
             actual = globus.as_globus_path('/foo/bar')
-            self.assertEqual(actual, f'/{Path.cwd().drive[0]}/foo/bar')
+            self.assertEqual(actual, f'/{Path.cwd().drive[0].upper()}/foo/bar')
 
         # On all systems an explicit Windows path should be converted to a POSIX one
         actual = globus.as_globus_path(PureWindowsPath('E:\\FlatIron\\integration'))
diff --git a/_modules/one/tests/test_alyxclient.html b/_modules/one/tests/test_alyxclient.html
index 1ed3fde0..867583cd 100644
--- a/_modules/one/tests/test_alyxclient.html
+++ b/_modules/one/tests/test_alyxclient.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.test_alyxclient — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -110,6 +108,7 @@ 
    Source code for one.tests.test_alyxclient
     """Unit tests for the one.webclient module"""
 import unittest
 from unittest import mock
+import urllib.parse
 import random
 import os
 import one.webclient as wc
@@ -167,10 +166,17 @@ 
    Source code for one.tests.test_alyxclient
                 ac.authenticate()
             mock_input.assert_not_called()
         self.assertTrue(ac.is_logged_in)
+
+        # When password is None and in silent mode, there should be a warning
+        # followed by a failed login attempt
+        ac._par = ac._par.set('ALYX_PWD', None)
+        ac.logout()
+        with self.assertWarns(UserWarning), self.assertRaises(requests.HTTPError):
+            self.ac.authenticate(password=None)
+
         # Test using input args
         ac._par = iopar.from_dict({k: v for k, v in ac._par.as_dict().items()
                                    if k not in login_keys})
-        ac.logout()
         with mock.patch('builtins.input') as mock_input:
             ac.authenticate(TEST_DB_2['username'], TEST_DB_2['password'], cache_token=False)
             mock_input.assert_not_called()
@@ -192,6 +198,16 @@ 
    Source code for one.tests.test_alyxclient
             with mock.patch('one.webclient.getpass', return_value=TEST_DB_2['password']) as mock_pwd:
             ac.authenticate(cache_token=True, force=True)
             mock_pwd.assert_called()
+        # If a password is passed, should always force re-authentication
+        rep = requests.Response()
+        rep.status_code = 200
+        rep.json = lambda **_: {'token': 'abc'}
+        assert self.ac.is_logged_in
+        with mock.patch('one.webclient.requests.post', return_value=rep) as m:
+            self.ac.authenticate(password='foo', force=False)
+            expected = {'username': TEST_DB_2['username'], 'password': 'foo'}
+            m.assert_called_once_with(TEST_DB_2['base_url'] + '/auth-token', data=expected)
+
         # Check non-silent double logout
         ac.logout()
         ac.logout()  # Shouldn't complain
    
@@ -655,7 +671,86 @@ 
    Source code for one.tests.test_alyxclient
                 self.assertTrue(str(ac.cache_dir).endswith('foobar'))
         finally:
             ac._par = ac._par.set('CACHE_DIR', prev_path)
    
-
    
+
+
+
    
+[docs]
+    def test_paginated_response(self):
+        """Test the _PaginatedResponse class."""
+        alyx = mock.Mock(spec_set=ac)
+        N, lim = 2000, 250  # 2000 results, 250 records per page
+        url = ac.base_url + f'/?foo=bar&offset={lim}&limit={lim}'
+        res = {'count': N, 'next': url, 'previous': None, 'results': []}
+        res['results'] = [{'id': i} for i in range(lim)]
+        alyx._generic_request.return_value = res
+        # Check initialization
+        pg = wc._PaginatedResponse(alyx, res, cache_args=dict(clobber=True))
+        self.assertEqual(pg.count, N)
+        self.assertEqual(len(pg), N)
+        self.assertEqual(pg.limit, lim)
+        self.assertEqual(len(pg._cache), N)
+        self.assertEqual(pg._cache[:lim], res['results'])
+        self.assertTrue(not any(pg._cache[lim:]))
+        self.assertIs(pg.alyx, alyx)
+
+        # Check fetching cached item with +ve int
+        self.assertEqual({'id': 1}, pg[1])
+        alyx._generic_request.assert_not_called()
+        # Check fetching cached item with +ve slice
+        self.assertEqual([{'id': 1}, {'id': 2}], pg[1:3])
+        alyx._generic_request.assert_not_called()
+        # Check fetching cached item with -ve int
+        self.assertEqual({'id': 100}, pg[-1900])
+        alyx._generic_request.assert_not_called()
+        # Check fetching cached item with -ve slice
+        self.assertEqual([{'id': 100}, {'id': 101}], pg[-1900:-1898])
+        alyx._generic_request.assert_not_called()
+        # Check fetching uncached item with +ve int
+        n = offset = lim
+        res['results'] = [{'id': i} for i in range(offset, offset + lim)]
+        assert not any(pg._cache[offset:offset + lim])
+        self.assertEqual({'id': lim}, pg[n])
+        self.assertEqual(res['results'], pg._cache[offset:offset + lim])
+        alyx._generic_request.assert_called_once_with(requests.get, mock.ANY, clobber=True)
+        self._check_get_query(alyx._generic_request.call_args, lim, offset)
+        # Check fetching uncached item with -ve int
+        offset = lim * 3
+        res['results'] = [{'id': i} for i in range(offset, offset + lim)]
+        n = offset - N + 2
+        assert not any(pg._cache[offset:offset + lim])
+        self.assertEqual({'id': N + n}, pg[n])
+        self.assertEqual(res['results'], pg._cache[offset:offset + lim])
+        alyx._generic_request.assert_called_with(requests.get, mock.ANY, clobber=True)
+        self._check_get_query(alyx._generic_request.call_args, lim, offset)
+        # Check fetching uncached item with +ve slice
+        offset = lim * 5
+        res['results'] = [{'id': i} for i in range(offset, offset + lim)]
+        n = offset + 20
+        assert not any(pg._cache[offset:offset + lim])
+        self.assertEqual([{'id': n}, {'id': n + 1}], pg[n:n + 2])
+        self.assertEqual(res['results'], pg._cache[offset:offset + lim])
+        alyx._generic_request.assert_called_with(requests.get, mock.ANY, clobber=True)
+        self._check_get_query(alyx._generic_request.call_args, lim, offset)
+        # Check fetching uncached item with -ve slice
+        offset = N - lim
+        res['results'] = [{'id': i} for i in range(offset, offset + lim)]
+        assert not any(pg._cache[offset:offset + lim])
+        self.assertEqual([{'id': N - 2}, {'id': N - 1}], pg[-2:])
+        self.assertEqual(res['results'], pg._cache[offset:offset + lim])
+        alyx._generic_request.assert_called_with(requests.get, mock.ANY, clobber=True)
+        self._check_get_query(alyx._generic_request.call_args, lim, offset)
+        # At this point, there should be a certain number of None values left
+        self.assertEqual(expected_calls := 4, alyx._generic_request.call_count)
+        self.assertEqual((expected_calls + 1) * lim, sum(list(map(bool, pg._cache))))
    
+
+
+    def _check_get_query(self, call_args, limit, offset):
+        """Check URL get query contains the expected limit and offset params."""
+        (_, url), _ = call_args
+        self.assertTrue(url.startswith(ac.base_url))
+        query = urllib.parse.parse_qs(urllib.parse.urlparse(url).query)
+        expected = {'foo': ['bar'], 'offset': [str(offset)], 'limit': [str(limit)]}
+        self.assertDictEqual(query, expected)
    
 
 
 
diff --git a/_modules/one/tests/test_alyxrest.html b/_modules/one/tests/test_alyxrest.html
index b29e15d5..ae5c671a 100644
--- a/_modules/one/tests/test_alyxrest.html
+++ b/_modules/one/tests/test_alyxrest.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.test_alyxrest — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/tests/test_converters.html b/_modules/one/tests/test_converters.html
index 775fc321..baf46464 100644
--- a/_modules/one/tests/test_converters.html
+++ b/_modules/one/tests/test_converters.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.test_converters — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -111,7 +109,7 @@ 
    Source code for one.tests.test_converters
     import unittest
 from unittest import mock
 from pathlib import Path, PurePosixPath, PureWindowsPath
-from uuid import UUID
+from uuid import UUID, uuid4
 import datetime
 
 import pandas as pd
@@ -244,11 +242,17 @@ 
    Source code for one.tests.test_converters
             self.assertTrue(file.as_posix().endswith(rec['rel_path']))
 
         # Test URL
-        parts = add_uuid_string(file, '94285bfd-7500-4583-83b1-906c420cc667').parts[-7:]
+        uuid = '6cbb724e-c7ec-4eab-b24b-555001502d10'
+        parts = add_uuid_string(file, uuid).parts[-7:]
         url = TEST_DB_2['base_url'] + '/'.join(('', *parts))
         rec = self.one.path2record(url)
         self.assertIsInstance(rec, pd.Series)
         self.assertTrue(file.as_posix().endswith(rec['rel_path']))
+        # With a UUID missing from cache, should return None
+        uuid = '94285bfd-7500-4583-83b1-906c420cc667'
+        parts = add_uuid_string(file, uuid).parts[-7:]
+        url = TEST_DB_2['base_url'] + '/'.join(('', *parts))
+        self.assertIsNone(self.one.path2record(url))
 
         file = file.parent / '_fake_obj.attr.npy'
         self.assertIsNone(self.one.path2record(file))
@@ -435,14 +439,18 @@ 
    Source code for one.tests.test_converters
             # As pd.DataFrame
         idx = rec.rel_path == 'alf/probe00/_phy_spikes_subset.channels.npy'
         path = self.one.record2path(rec[idx])
-        self.assertEqual(expected, path)
+        self.assertEqual([expected], path)
+        # Test validation
+        self.assertRaises(AssertionError, self.one.record2path, rec[idx].droplevel(0))  # no eid
+        self.assertRaises(TypeError, self.one.record2path, rec[idx].to_dict())
+        unknown = rec[idx].squeeze().rename(index=(str(uuid4()), data_id))
+        self.assertRaises(ValueError, self.one.record2path, unknown)  # unknown eid
         # With UUID in file name
         try:
             self.one.uuid_filenames = True
             expected = expected.with_suffix(f'.{data_id}.npy')
-            self.assertEqual(expected, self.one.record2path(rec[idx]))  # as pd.DataFrame
+            self.assertEqual([expected], self.one.record2path(rec[idx]))  # as pd.DataFrame
             self.assertEqual(expected, self.one.record2path(rec[idx].squeeze()))  # as pd.Series
-            self.assertEqual(expected, self.one.record2path(rec[idx].droplevel(0)))  # no eid
         finally:
             self.one.uuid_filenames = False
    
 
diff --git a/_modules/one/tests/test_one.html b/_modules/one/tests/test_one.html
index 72b42c4c..97fa2f1d 100644
--- a/_modules/one/tests/test_one.html
+++ b/_modules/one/tests/test_one.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.test_one — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -157,7 +155,7 @@ 
    Source code for one.tests.test_one
     from one.api import ONE, One, OneAlyx
 from one.util import (
     ses2records, validate_date_range, index_last_before, filter_datasets, _collection_spec,
-    filter_revision_last_before, parse_id, autocomplete, LazyId, datasets2records
+    filter_revision_last_before, parse_id, autocomplete, LazyId, datasets2records, ensure_list
 )
 import one.params
 import one.alf.exceptions as alferr
@@ -421,15 +419,22 @@ 
    Source code for one.tests.test_one
             datasets['rel_path'] = revisions
 
         # Should return last revision before date for each collection/dataset
+        # These comprise mixed revisions which should trigger ALF warning
         revision = '2020-09-06'
-        verifiable = filter_datasets(datasets, None, None, revision, assert_unique=False)
+        expected_warn = 'Multiple revisions: "2020-08-31", "2020-01-01"'
+        with self.assertWarnsRegex(alferr.ALFWarning, expected_warn):
+            verifiable = filter_datasets(datasets, None, None, revision, assert_unique=False)
         self.assertEqual(2, len(verifiable))
         self.assertTrue(all(x.split('#')[1] < revision for x in verifiable['rel_path']))
 
-        # Should return single dataset with last revision when default specified
-        with self.assertRaises(alferr.ALFMultipleRevisionsFound):
-            filter_datasets(datasets, '*spikes.times*', 'alf/probe00', None,
-                            assert_unique=True, wildcards=True, revision_last_before=True)
+        # with no default_revisions column there should be a warning about return latest revision
+        # when no revision is provided.
+        with self.assertWarnsRegex(alferr.ALFWarning, 'No default revision for dataset'):
+            verifiable = filter_datasets(
+                datasets, '*spikes.times*', 'alf/probe00', None,
+                assert_unique=True, wildcards=True, revision_last_before=True)
+            self.assertEqual(1, len(verifiable))
+            self.assertTrue(verifiable['rel_path'].str.contains('#2021-xx-xx#').all())
 
         # Should return matching revision
         verifiable = filter_datasets(datasets, None, None, r'2020-08-\d{2}',
@@ -470,8 +475,8 @@ 
    Source code for one.tests.test_one
                                          assert_unique=True, wildcards=True, revision_last_before=True)
         self.assertEqual(verifiable.rel_path.to_list(),
                          ['alf/probe00/#2020-01-01#/spikes.times.npy'])
-        # When revision_last_before is false, expect multiple objects error
-        with self.assertRaises(alferr.ALFMultipleObjectsFound):
+        # When revision_last_before is false, expect multiple revisions error
+        with self.assertRaises(alferr.ALFMultipleRevisionsFound):
             filter_datasets(datasets, '*spikes.times*', 'alf/probe00', None,
                             assert_unique=True, wildcards=True, revision_last_before=False)
    
 
@@ -486,11 +491,28 @@ 
    Source code for one.tests.test_one
                                          assert_unique=False, wildcards=True)
         self.assertTrue(len(verifiable) == 2)
         # As dict with list (should act as logical OR)
+        kwargs = dict(assert_unique=False, revision_last_before=False, wildcards=True)
         dataset = dict(attribute=['timestamp?', 'raw'])
-        verifiable = filter_datasets(datasets, dataset, None, None,
-                                     assert_unique=False, revision_last_before=False,
-                                     wildcards=True)
-        self.assertEqual(4, len(verifiable))
    
+        verifiable = filter_datasets(datasets, dataset, None, None, **kwargs)
+        self.assertEqual(4, len(verifiable))
+
+        # Test handling greedy captures of collection parts when there are wildcards at the start
+        # of the filename patten.
+
+        # Add some identical files that exist in collections and sub-collections
+        # (i.e. raw_ephys_data, raw_ephys_data/probe00, raw_ephys_data/probe01)
+        all_datasets = self.one._cache.datasets
+        meta_datasets = all_datasets[all_datasets.rel_path.str.contains('meta')].copy()
+        datasets = pd.concat([datasets, meta_datasets])
+
+        # Matching *meta should not capture raw_ephys_data/probe00, etc.
+        verifiable = filter_datasets(datasets, '*.meta', 'raw_ephys_data', None, **kwargs)
+        expected = ['raw_ephys_data/_spikeglx_ephysData_g0_t0.nidq.meta']
+        self.assertCountEqual(expected, verifiable.rel_path)
+        verifiable = filter_datasets(datasets, '*.meta', 'raw_ephys_data/probe??', None, **kwargs)
+        self.assertEqual(2, len(verifiable))
+        verifiable = filter_datasets(datasets, '*.meta', 'raw_ephys_data*', None, **kwargs)
+        self.assertEqual(3, len(verifiable))
    
 
 
 
    
@@ -534,7 +556,26 @@ 
    Source code for one.tests.test_one
             for eid in [None, 'KS005/2019-04-02/001']:
             dsets = self.one.list_datasets(eid, details=False)
             self.assertIsInstance(dsets, list)
-            self.assertTrue(len(dsets) == np.unique(dsets).size)
    
+            self.assertTrue(len(dsets) == np.unique(dsets).size)
+
+        # Test default_revisions_only=True
+        with self.assertRaises(alferr.ALFError):  # should raise as no 'default_revision' column
+            self.one.list_datasets('KS005/2019-04-02/001', default_revisions_only=True)
+        # Add the column and add some alternates
+        datasets = util.revisions_datasets_table(collections=['alf'], revisions=['', '2023-01-01'])
+        datasets['default_revision'] = [False, True] * 2
+        self.one._cache.datasets['default_revision'] = True
+        self.one._cache.datasets = pd.concat([self.one._cache.datasets, datasets]).sort_index()
+        eid, *_ = datasets.index.get_level_values(0)
+        dsets = self.one.list_datasets(eid, 'spikes.*', default_revisions_only=False)
+        self.assertEqual(4, len(dsets))
+        dsets = self.one.list_datasets(eid, 'spikes.*', default_revisions_only=True)
+        self.assertEqual(2, len(dsets))
+        self.assertTrue(all('#2023-01-01#' in x for x in dsets))
+        # Should be the same with details=True
+        dsets = self.one.list_datasets(eid, 'spikes.*', default_revisions_only=True, details=True)
+        self.assertEqual(2, len(dsets))
+        self.assertTrue(all('#2023-01-01#' in x for x in dsets.rel_path))
    
 
 
 
    
@@ -628,23 +669,46 @@ 
    Source code for one.tests.test_one
     [docs]
     def test_check_filesystem(self):
         """Test for One._check_filesystem.
+
         Most is already covered by other tests, this checks that it can deal with dataset frame
         without eid index and without a session_path column.
         """
         # Get two eids to test
         eids = self.one._cache['datasets'].index.get_level_values(0)[[0, -1]]
-        datasets = self.one._cache['datasets'].loc[eids].drop('session_path', axis=1)
+        datasets = self.one._cache['datasets'].loc[eids]
         files = self.one._check_filesystem(datasets)
         self.assertEqual(53, len(files))
+
         # Expect same number of unique session paths as eids
         session_paths = set(map(lambda p: p.parents[1], files))
         self.assertEqual(len(eids), len(session_paths))
         expected = map(lambda x: '/'.join(x.parts[-3:]), session_paths)
         session_parts = self.one._cache['sessions'].loc[eids, ['subject', 'date', 'number']].values
         self.assertCountEqual(expected, map(lambda x: f'{x[0]}/{x[1]}/{x[2]:03}', session_parts))
-        # Attempt the same with the eid index missing
-        datasets = datasets.droplevel(0).drop('session_path', axis=1)
+
+        # Test a very rare occurence of a missing dataset with eid index missing
+        # but session_path column present
+        idx = self.one._cache.datasets.index[(i := 5)]  # pick a random dataset to make vanish
+        _eid2path = {
+            e: self.one.eid2path(e).relative_to(self.one.cache_dir).as_posix() for e in eids
+        }
+        session_paths = list(map(_eid2path.get, datasets.index.get_level_values(0)))
+        datasets['session_path'] = session_paths
+        datasets = datasets.droplevel(0)
+        files[(i := 5)].unlink()
+        # For this check the current state should be exists==True in the main cache
+        assert self.one._cache.datasets.loc[idx, 'exists'].all()
+        _files = self.one._check_filesystem(datasets, update_exists=True)
+        self.assertIsNone(_files[i])
+        self.assertFalse(
+            self.one._cache.datasets.loc[idx, 'exists'].all(), 'failed to update cache exists')
+        files[i].touch()  # restore file for next check
+
+        # Attempt to load datasets with both eid index
+        # and session_path column missing (most common)
+        datasets = datasets.drop('session_path', axis=1)
         self.assertEqual(files, self.one._check_filesystem(datasets))
+
         # Test with uuid_filenames as True
         self.one.uuid_filenames = True
         try:
@@ -763,21 +827,48 @@ 
    Source code for one.tests.test_one
             files, meta = self.one.load_datasets(eid, dsets, download_only=True)
         self.assertTrue(all(isinstance(x, Path) for x in files))
 
+        # Check behaviour when loading with a data frame (undocumented)
+        eid = '01390fcc-4f86-4707-8a3b-4d9309feb0a1'
+        datasets = self.one._cache.datasets.loc[([eid],), :].iloc[:3, :]
+        files, meta = self.one.load_datasets(eid, datasets, download_only=True)
+        self.assertTrue(all(isinstance(x, Path) for x in files))
+        # Should raise when data frame contains a different eid
+        self.assertRaises(AssertionError, self.one.load_datasets, uuid4(), datasets)
+
+        # Mix of str and dict
+        # Check download only
+        dsets = [
+            spec.regex(spec.FILE_SPEC).match('_ibl_wheel.position.npy').groupdict(),
+            '_ibl_wheel.timestamps.npy'
+        ]
+        with self.assertRaises(ValueError):
+            self.one.load_datasets('KS005/2019-04-02/001', dsets, assert_present=False)
+
         # Loading of non default revisions without using the revision kwarg causes user warning.
-        # With relative paths provided as input, dataset uniqueness validation is supressed.
+        # With relative paths provided as input, dataset uniqueness validation is suppressed.
+        eid = self.one._cache.sessions.iloc[0].name
         datasets = util.revisions_datasets_table(
-            revisions=('', '2020-01-08'), attributes=('times',))
+            revisions=('', '2020-01-08'), attributes=('times',), touch_path=self.one.eid2path(eid))
         datasets['default_revision'] = [False, True] * 3
-        eid = datasets.iloc[0].name[0]
+        datasets.index = datasets.index.set_levels([eid], level=0)
         self.one._cache.datasets = datasets
-        with self.assertWarns(UserWarning):
-            self.one.load_datasets(eid, datasets['rel_path'].to_list(),
-                                   download_only=True, assert_present=False)
+        with self.assertWarns(alferr.ALFWarning):
+            self.one.load_datasets(eid, datasets['rel_path'].to_list(), download_only=True)
 
         # When loading without collections in the dataset list (i.e. just the dataset names)
         # an exception should be raised when datasets belong to multiple collections.
         self.assertRaises(
-            alferr.ALFMultipleCollectionsFound, self.one.load_datasets, eid, ['spikes.times'])
    
+            alferr.ALFMultipleCollectionsFound, self.one.load_datasets, eid, ['spikes.times'])
+
+        # Ensure that when rel paths are passed, a null collection/revision is not interpreted as
+        # an ANY. NB this means the output of 'spikes.times.npy' will be different depending on
+        # weather other datasets in list include a collection or revision.
+        self.one._cache.datasets = datasets.iloc[:2, :].copy()  # only two datasets, one default
+        (file,), _ = self.one.load_datasets(eid, ['spikes.times.npy', ], download_only=True)
+        self.assertTrue(file.as_posix().endswith('001/#2020-01-08#/spikes.times.npy'))
+        (file, _), _ = self.one.load_datasets(
+            eid, ['spikes.times.npy', 'xx/obj.attr.ext'], download_only=True, assert_present=False)
+        self.assertTrue(file.as_posix().endswith('001/spikes.times.npy'))
    
 
 
 
    
@@ -1009,13 +1100,24 @@ 
    Source code for one.tests.test_one
             # Check behaviour when columns don't match
         datasets.loc[:, 'exists'] = ~datasets.loc[:, 'exists']
         datasets['extra_column'] = True
+        self.one._cache.datasets['foo_bar'] = 12  # this column is missing in our new records
         self.one._cache.datasets['new_column'] = False
-        self.addCleanup(self.one._cache.datasets.drop, 'new_column', axis=1, inplace=True)
+        self.addCleanup(self.one._cache.datasets.drop, 'foo_bar', axis=1, inplace=True)
+        # An exception is exists_* as the Alyx cache contains exists_aws and exists_flatiron
+        # These should simply be filled with the values of exists as Alyx won't return datasets
+        # that don't exist on FlatIron and if they don't exist on AWS it falls back to this.
+        self.one._cache.datasets['exists_aws'] = False
         with self.assertRaises(AssertionError):
             self.one._update_cache_from_records(datasets=datasets, strict=True)
         self.one._update_cache_from_records(datasets=datasets)
         verifiable = self.one._cache.datasets.loc[datasets.index.values, 'exists']
         self.assertTrue(np.all(verifiable == datasets.loc[:, 'exists']))
+        self.one._update_cache_from_records(datasets=datasets)
+        verifiable = self.one._cache.datasets.loc[datasets.index.values, 'exists_aws']
+        self.assertTrue(np.all(verifiable == datasets.loc[:, 'exists']))
+        # If the extra column does not start with 'exists' it should be set to NaN
+        verifiable = self.one._cache.datasets.loc[datasets.index.values, 'foo_bar']
+        self.assertTrue(np.isnan(verifiable).all())
 
         # Check fringe cases
         with self.assertRaises(KeyError):
@@ -1053,14 +1155,14 @@ 
    Source code for one.tests.test_one
             old_cache = self.one._cache['datasets']
         try:
             datasets = [self.one._cache.datasets, dset.to_frame().T]
-            datasets = pd.concat(datasets).astype(old_cache.dtypes)
+            datasets = pd.concat(datasets).astype(old_cache.dtypes).sort_index()
+            datasets.index.set_names(('eid', 'id'), inplace=True)
             self.one._cache['datasets'] = datasets
             dsets = [dset['rel_path'], '_ibl_trials.feedback_times.npy']
             new_files, rec = self.one.load_datasets(eid, dsets, assert_present=False)
             loaded = self.one._cache['_loaded_datasets']
             # One dataset is already in the list (test for duplicates) and other doesn't exist
             self.assertEqual(len(files), len(loaded), 'No new UUIDs should have been added')
-            self.assertIn(rec[1]['id'], loaded)  # Already in list
             self.assertEqual(len(loaded), len(np.unique(loaded)))
             self.assertNotIn(dset.name[1], loaded)  # Wasn't loaded as doesn't exist on disk
         finally:
@@ -1474,9 +1576,6 @@ 
    Source code for one.tests.test_one
             # Test listing by relation
         datasets = self.one.list_aggregates('subjects')
         self.assertTrue(all(datasets['rel_path'].str.startswith('aggregates/Subjects')))
-        self.assertIn('exists_aws', datasets.columns)
-        self.assertIn('session_path', datasets.columns)
-        self.assertTrue(all(datasets['session_path'] == ''))
         self.assertTrue(self.one.list_aggregates('foobar').empty)
         # Test filtering with an identifier
         datasets = self.one.list_aggregates('subjects', 'ZM_1085')
@@ -1714,7 +1813,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_search_terms(self):
-        """Test OneAlyx.search_terms"""
+        """Test OneAlyx.search_terms."""
         assert self.one.mode != 'remote'
         search1 = self.one.search_terms()
         self.assertIn('dataset', search1)
@@ -1735,7 +1834,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_load_dataset(self):
-        """Test OneAlyx.load_dataset"""
+        """Test OneAlyx.load_dataset."""
         file = self.one.load_dataset(self.eid, '_spikeglx_sync.channels.npy',
                                      collection='raw_ephys_data', query_type='remote',
                                      download_only=True)
@@ -1754,7 +1853,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_load_object(self):
-        """Test OneAlyx.load_object"""
+        """Test OneAlyx.load_object."""
         files = self.one.load_object(self.eid, 'wheel',
                                      collection='alf', query_type='remote',
                                      download_only=True)
@@ -1767,7 +1866,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_get_details(self):
-        """Test OneAlyx.get_details"""
+        """Test OneAlyx.get_details."""
         det = self.one.get_details(self.eid, query_type='remote')
         self.assertIsInstance(det, dict)
         self.assertEqual('SWC_043', det['subject'])
@@ -1788,7 +1887,7 @@ 
    Source code for one.tests.test_one
     [docs]
 @unittest.skipIf(OFFLINE_ONLY, 'online only test')
 class TestOneDownload(unittest.TestCase):
-    """Test downloading datasets using OpenAlyx"""
+    """Test downloading datasets using OpenAlyx."""
     tempdir = None
     one = None
 
@@ -1807,7 +1906,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_download_datasets(self):
-        """Test OneAlyx._download_dataset, _download_file and _dset2url"""
+        """Test OneAlyx._download_dataset, _download_file and _dset2url."""
         det = self.one.get_details(self.eid, True)
         rec = next(x for x in det['data_dataset_session_related']
                    if 'channels.brainLocation' in x['dataset_type'])
@@ -1889,6 +1988,8 @@ 
    Source code for one.tests.test_one
             rec = self.one.list_datasets(self.eid, details=True)
         rec = rec[rec.rel_path.str.contains('00/pykilosort/channels.brainLocation')]
         rec['exists_aws'] = False  # Ensure we use FlatIron for this
+        rec = pd.concat({str(self.eid): rec}, names=['eid'])
+
         files = self.one._download_datasets(rec)
         self.assertFalse(None in files)
 
@@ -1902,8 +2003,11 @@ 
    Source code for one.tests.test_one
         def test_download_aws(self):
         """Test for OneAlyx._download_aws method."""
         # Test download datasets via AWS
-        dsets = self.one.list_datasets(self.eid, details=True)
-        file = self.one.cache_dir / dsets['rel_path'].values[0]
+        dsets = self.one.list_datasets(
+            self.eid, filename='*wiring.json', collection='raw_ephys_data/probe??', details=True)
+        dsets = pd.concat({str(self.eid): dsets}, names=['eid'])
+
+        file = self.one.eid2path(self.eid) / dsets['rel_path'].values[0]
         with mock.patch('one.remote.aws.get_s3_from_alyx', return_value=(None, None)), \
                 mock.patch('one.remote.aws.s3_download_file', return_value=file) as method:
             self.one._download_datasets(dsets)
@@ -1915,23 +2019,25 @@ 
    Source code for one.tests.test_one
                 # Check keep_uuid = True
             self.one._download_datasets(dsets, keep_uuid=True)
             _, local = method.call_args.args
-            self.assertIn(dsets.iloc[-1].name, local.name)
+            self.assertIn(dsets.iloc[-1].name[1], local.name)
 
         # Test behaviour when dataset not remotely accessible
         dsets = dsets[:1].copy()
-        rec = self.one.alyx.rest('datasets', 'read', id=dsets.index[0])
+        rec = self.one.alyx.rest('datasets', 'read', id=dsets.index[0][1])
         # need to find the index of matching aws repo, this is not constant across releases
         iaws = list(map(lambda x: x['data_repository'].startswith('aws'),
                         rec['file_records'])).index(True)
         rec['file_records'][iaws]['exists'] = False  # Set AWS file record to non-existent
+        self.one._cache.datasets['exists_aws'] = True  # Only changes column if exists
         with mock.patch('one.remote.aws.get_s3_from_alyx', return_value=(None, None)), \
                 mock.patch.object(self.one.alyx, 'rest', return_value=[rec]), \
                 self.assertLogs('one.api', logging.DEBUG) as log:
-            self.assertEqual([None], self.one._download_datasets(dsets))
-            self.assertRegex(log.output[-1], 'Updating exists field')
+            # should still download file via fallback method
+            self.assertEqual([file], self.one._download_datasets(dsets))
+            self.assertRegex(log.output[1], 'Updating exists field')
             datasets = self.one._cache['datasets']
             self.assertFalse(
-                datasets.loc[pd.IndexSlice[:, dsets.index[0]], 'exists_aws'].any()
+                datasets.loc[pd.IndexSlice[:, dsets.index[0][1]], 'exists_aws'].any()
             )
 
         # Check falls back to HTTP when error raised
@@ -1949,6 +2055,7 @@ 
    Source code for one.tests.test_one
     [docs]
     def test_tag_mismatched_file_record(self):
         """Test for OneAlyx._tag_mismatched_file_record.
+
         This method is also tested in test_download_datasets.
         """
         did = '4a1500c2-60f3-418f-afa2-c752bb1890f0'
@@ -1978,7 +2085,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
 class TestOneSetup(unittest.TestCase):
-    """Test parameter setup upon ONE instantiation and calling setup methods"""
+    """Test parameter setup upon ONE instantiation and calling setup methods."""
 
    
 [docs]
     def setUp(self) -> None:
@@ -1994,7 +2101,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_local_cache_setup_prompt(self):
-        """Test One.setup"""
+        """Test One.setup."""
         path = Path(self.tempdir.name).joinpath('subject', '2020-01-01', '1', 'spikes.times.npy')
         path.parent.mkdir(parents=True)
         path.touch()
@@ -2021,6 +2128,7 @@ 
    Source code for one.tests.test_one
     [docs]
     def test_setup_silent(self):
         """Test setting up parameters with silent flag.
+
         - Mock getfile to return temp dir as param file location
         - Mock input function as fail safe in case function erroneously prompts user for input
         """
@@ -2054,6 +2162,7 @@ 
    Source code for one.tests.test_one
     [docs]
     def test_setup_username(self):
         """Test setting up parameters with a provided username.
+
         - Mock getfile to return temp dir as param file location
         - Mock input function as fail safe in case function erroneously prompts user for input
         - Mock requests.post returns a fake user authentication response
@@ -2085,7 +2194,7 @@ 
    Source code for one.tests.test_one
     [docs]
     @unittest.skipIf(OFFLINE_ONLY, 'online only test')
     def test_static_setup(self):
-        """Test OneAlyx.setup"""
+        """Test OneAlyx.setup."""
         with mock.patch('iblutil.io.params.getfile', new=self.get_file), \
                 mock.patch('one.webclient.getpass', return_value='international'):
             one_obj = OneAlyx.setup(silent=True)
@@ -2095,7 +2204,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_setup(self):
-        """Test one.params.setup"""
+        """Test one.params.setup."""
         url = TEST_DB_1['base_url']
 
         def mock_input(prompt):
@@ -2142,7 +2251,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_patch_params(self):
-        """Test patching legacy params to the new location"""
+        """Test patching legacy params to the new location."""
         # Save some old-style params
         old_pars = one.params.default().set('HTTP_DATA_SERVER', 'openalyx.org')
         # Save a REST query in the old location
@@ -2162,7 +2271,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_one_factory(self):
-        """Tests the ONE class factory"""
+        """Tests the ONE class factory."""
         with mock.patch('iblutil.io.params.getfile', new=self.get_file), \
                 mock.patch('one.params.input', new=self.assertFalse):
             # Cache dir not in client cache map; use One (light)
@@ -2200,11 +2309,11 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
 class TestOneMisc(unittest.TestCase):
-    """Test functions in one.util"""
+    """Test functions in one.util."""
 
    
 [docs]
     def test_validate_date_range(self):
-        """Test one.util.validate_date_range"""
+        """Test one.util.validate_date_range."""
         # Single string date
         actual = validate_date_range('2020-01-01')  # On this day
         expected = (pd.Timestamp('2020-01-01 00:00:00'),
@@ -2250,7 +2359,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_index_last_before(self):
-        """Test one.util.index_last_before"""
+        """Test one.util.index_last_before."""
         revisions = ['2021-01-01', '2020-08-01', '', '2020-09-30']
         verifiable = index_last_before(revisions, '2021-01-01')
         self.assertEqual(0, verifiable)
@@ -2270,7 +2379,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_collection_spec(self):
-        """Test one.util._collection_spec"""
+        """Test one.util._collection_spec."""
         # Test every combination of input
         inputs = []
         _collection = {None: '({collection}/)?', '': '', '-': '{collection}/'}
@@ -2287,20 +2396,20 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_revision_last_before(self):
-        """Test one.util.filter_revision_last_before"""
+        """Test one.util.filter_revision_last_before."""
         datasets = util.revisions_datasets_table()
         df = datasets[datasets.rel_path.str.startswith('alf/probe00')].copy()
-        verifiable = filter_revision_last_before(df,
-                                                 revision='2020-09-01', assert_unique=False)
+        verifiable = filter_revision_last_before(df, revision='2020-09-01', assert_unique=False)
         self.assertTrue(len(verifiable) == 2)
 
-        # Test assert unique
+        # Remove one of the datasets' revisions to test assert unique on mixed revisions
+        df_mixed = df.drop((df['revision'] == '2020-01-08').idxmax())
         with self.assertRaises(alferr.ALFMultipleRevisionsFound):
-            filter_revision_last_before(df, revision='2020-09-01', assert_unique=True)
+            filter_revision_last_before(df_mixed, revision='2020-09-01', assert_consistent=True)
 
         # Test with default revisions
         df['default_revision'] = False
-        with self.assertLogs(logging.getLogger('one.util')):
+        with self.assertWarnsRegex(alferr.ALFWarning, 'No default revision for dataset'):
             verifiable = filter_revision_last_before(df.copy(), assert_unique=False)
         self.assertTrue(len(verifiable) == 2)
 
@@ -2311,8 +2420,10 @@ 
    Source code for one.tests.test_one
     
         # Add unique default revisions
         df.iloc[[0, 4], -1] = True
-        verifiable = filter_revision_last_before(df.copy(), assert_unique=True)
-        self.assertTrue(len(verifiable) == 2)
+        # Should log mixed revisions
+        with self.assertWarnsRegex(alferr.ALFWarning, 'Multiple revisions'):
+            verifiable = filter_revision_last_before(df.copy(), assert_unique=True)
+        self.assertEqual(2, len(verifiable))
         self.assertCountEqual(verifiable['rel_path'], df['rel_path'].iloc[[0, 4]])
 
         # Add multiple default revisions
@@ -2324,7 +2435,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_parse_id(self):
-        """Test one.util.parse_id"""
+        """Test one.util.parse_id."""
         obj = unittest.mock.MagicMock()  # Mock object to decorate
         obj.to_eid.return_value = 'parsed_id'  # Method to be called
         input = 'subj/date/num'  # Input id to pass to `to_eid`
@@ -2341,7 +2452,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_autocomplete(self):
-        """Test one.util.autocomplete"""
+        """Test one.util.autocomplete."""
         search_terms = ('subject', 'date_range', 'dataset', 'dataset_type')
         self.assertEqual('subject', autocomplete('Subj', search_terms))
         self.assertEqual('dataset', autocomplete('dataset', search_terms))
@@ -2354,7 +2465,7 @@ 
    Source code for one.tests.test_one
     
    
 [docs]
     def test_LazyID(self):
-        """Test one.util.LazyID"""
+        """Test one.util.LazyID."""
         uuids = [
             'c1a2758d-3ce5-4fa7-8d96-6b960f029fa9',
             '0780da08-a12b-452a-b936-ebc576aa7670',
@@ -2368,6 +2479,18 @@ 
    Source code for one.tests.test_one
             self.assertEqual(ez[0:2], uuids[0:2])
         ez = LazyId([{'id': x} for x in uuids])
         self.assertCountEqual(map(str, ez), uuids)
    
+
+
+
    
+[docs]
+    def test_ensure_list(self):
+        """Test one.util.ensure_list.
+
+        This function has now moved therefore we simply check for deprecation warning.
+        """
+        with self.assertWarns(DeprecationWarning):
+            self.assertEqual(['123'], ensure_list('123'))
+            self.assertIs(x := ['123'], ensure_list(x))
    
 
    
 
 
    
diff --git a/_modules/one/tests/test_params.html b/_modules/one/tests/test_params.html
index efae23ab..5d75c12d 100644
--- a/_modules/one/tests/test_params.html
+++ b/_modules/one/tests/test_params.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.test_params — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/tests/test_registration.html b/_modules/one/tests/test_registration.html
index a0166704..60ff270e 100644
--- a/_modules/one/tests/test_registration.html
+++ b/_modules/one/tests/test_registration.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.test_registration — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
diff --git a/_modules/one/tests/util.html b/_modules/one/tests/util.html
index 3b4e2f7d..1d3bbda1 100644
--- a/_modules/one/tests/util.html
+++ b/_modules/one/tests/util.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.tests.util — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -120,6 +118,7 @@ 
    Source code for one.tests.util
     
 import one.params
 from one.util import QC_TYPE
+from one.converters import session_record2path
 
 
 
    
@@ -185,7 +184,8 @@ 
    Source code for one.tests.util
     
     """
     # Create dset files from cache
-    for session_path, rel_path in one._cache.datasets[['session_path', 'rel_path']].values:
+    for (eid, _), rel_path in one._cache.datasets['rel_path'].items():
+        session_path = session_record2path(one._cache.sessions.loc[eid])
         filepath = Path(one.cache_dir).joinpath(session_path, rel_path)
         filepath.parent.mkdir(exist_ok=True, parents=True)
         filepath.touch()
    
@@ -239,7 +239,8 @@ 
    Source code for one.tests.util
     def revisions_datasets_table(collections=('', 'alf/probe00', 'alf/probe01'),
                              revisions=('', '2020-01-08', '2021-07-06'),
                              object='spikes',
-                             attributes=('times', 'waveforems')):
+                             attributes=('times', 'waveforems'),
+                             touch_path=None):
     """Returns a datasets cache DataFrame containing datasets with revision folders.
 
     As there are no revised datasets on the test databases, this function acts as a fixture for
@@ -255,11 +256,13 @@ 
    Source code for one.tests.util
             An ALF object
     attributes : tuple
         A list of ALF attributes
+    touch_path : pathlib.Path, str
+        If provided, files are created in this directory.
 
     Returns
     -------
     pd.DataFrame
-        A datasets cache table containing datasets made from the input names
+        A datasets cache table containing datasets made from the input names.
 
     """
     rel_path = []
@@ -269,8 +272,7 @@ 
    Source code for one.tests.util
                     rel_path.append('/'.join(x for x in (collec, rev, f'{object}.{attr}.npy') if x))
     d = {
         'rel_path': rel_path,
-        'session_path': 'subject/1900-01-01/001',
-        'file_size': None,
+        'file_size': 0,
         'hash': None,
         'exists': True,
         'qc': 'NOT_SET',
@@ -278,6 +280,12 @@ 
    Source code for one.tests.util
             'id': map(str, (uuid4() for _ in rel_path))
     }
 
+    if touch_path:
+        for p in rel_path:
+            path = Path(touch_path).joinpath(p)
+            path.parent.mkdir(parents=True, exist_ok=True)
+            path.touch()
+
     return pd.DataFrame(data=d).astype({'qc': QC_TYPE}).set_index(['eid', 'id'])
    
 
 
diff --git a/_modules/one/util.html b/_modules/one/util.html
index c9fae638..600f7c7e 100644
--- a/_modules/one/util.html
+++ b/_modules/one/util.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.util — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -108,16 +106,19 @@
              
   
    Source code for one.util
     """Decorators and small standalone functions for api module."""
+import re
 import logging
 import urllib.parse
-from functools import wraps
+import fnmatch
+import warnings
+from functools import wraps, partial
 from typing import Sequence, Union, Iterable, Optional, List
 from collections.abc import Mapping
-import fnmatch
 from datetime import datetime
 
 import pandas as pd
 from iblutil.io import parquet
+from iblutil.util import ensure_list as _ensure_list
 import numpy as np
 from packaging import version
 
@@ -172,8 +173,8 @@ 
    Source code for one.util
             rec['eid'] = session.name
         file_path = urllib.parse.urlsplit(d['data_url'], allow_fragments=False).path.strip('/')
         file_path = get_alf_path(remove_uuid_string(file_path))
-        rec['session_path'] = get_session_path(file_path).as_posix()
-        rec['rel_path'] = file_path[len(rec['session_path']):].strip('/')
+        session_path = get_session_path(file_path).as_posix()
+        rec['rel_path'] = file_path[len(session_path):].strip('/')
         rec['default_revision'] = d['default_revision'] == 'True'
         rec['qc'] = d.get('qc', 'NOT_SET')
         return rec
@@ -211,7 +212,7 @@ 
    Source code for one.util
         """
     records = []
 
-    for d in ensure_list(datasets):
+    for d in _ensure_list(datasets):
         file_record = next((x for x in d['file_records'] if x['data_url'] and x['exists']), None)
         if not file_record:
             continue  # Ignore files that are not accessible
@@ -221,10 +222,10 @@ 
    Source code for one.util
             data_url = urllib.parse.urlsplit(file_record['data_url'], allow_fragments=False)
         file_path = get_alf_path(data_url.path.strip('/'))
         file_path = remove_uuid_string(file_path).as_posix()
-        rec['session_path'] = get_session_path(file_path) or ''
-        if rec['session_path']:
-            rec['session_path'] = rec['session_path'].as_posix()
-        rec['rel_path'] = file_path[len(rec['session_path']):].strip('/')
+        session_path = get_session_path(file_path) or ''
+        if session_path:
+            session_path = session_path.as_posix()
+        rec['rel_path'] = file_path[len(session_path):].strip('/')
         rec['default_revision'] = d['default_dataset']
         rec['qc'] = d.get('qc')
         for field in additional or []:
@@ -436,7 +437,9 @@ 
    Source code for one.util
         revision_last_before : bool
         When true and no exact match exists, the (lexicographically) previous revision is used
         instead.  When false the revision string is matched like collection and filename,
-        with regular expressions permitted.
+        with regular expressions permitted.  NB: When true and `revision` is None the default
+        revision is returned which may not be the last revision. If no default is defined, the
+        last revision is returned.
     qc : str, int, one.alf.spec.QC
         Returns datasets at or below this QC level.  Integer values should correspond to the QC
         enumeration NOT the qc category column codes in the pandas table.
@@ -479,6 +482,26 @@ 
    Source code for one.util
     
     >>> datasets filter_datasets(all_datasets, qc='PASS', ignore_qc_not_set=True)
 
+    Raises
+    ------
+    one.alf.exceptions.ALFMultipleCollectionsFound
+        The matching list of datasets have more than one unique collection and `assert_unique` is
+        True.
+    one.alf.exceptions.ALFMultipleRevisionsFound
+        When `revision_last_before` is false, the matching list of datasets have more than one
+        unique revision.  When `revision_last_before` is true, a 'default_revision' column exists,
+        and no revision is passed, this error means that one or more matching datasets have
+        multiple revisions specified as the default. This is typically an error in the cache table
+        itself as all datasets should have one and only one default revision specified.
+    one.alf.exceptions.ALFMultipleObjectsFound
+        The matching list of datasets have more than one unique filename and both `assert_unique`
+        and `revision_last_before` are true.
+    one.alf.exceptions.ALFError
+        When both `assert_unique` and `revision_last_before` is true, and a 'default_revision'
+        column exists but `revision` is None; one or more matching datasets have no default
+        revision specified. This is typically an error in the cache table itself as all datasets
+        should have one and only one default revision specified.
+
     Notes
     -----
     - It is not possible to match datasets that are in a given collection OR NOT in ANY collection.
@@ -494,9 +517,15 @@ 
    Source code for one.util
             spec_str += _file_spec(**filename)
         regex_args.update(**filename)
     else:
-        # Convert to regex is necessary and assert end of string
-        filename = [fnmatch.translate(x) if wildcards else x + '$' for x in ensure_list(filename)]
-        spec_str += '|'.join(filename)
+        # Convert to regex if necessary and assert end of string
+        flagless_token = re.escape(r'(?s:')  # fnmatch.translate may wrap input in flagless group
+        # If there is a wildcard at the start of the filename we must exclude capture of slashes to
+        # avoid capture of collection part, e.g. * -> .* -> [^/]* (one or more non-slash chars)
+        exclude_slash = partial(re.sub, fr'^({flagless_token})?\.\*', r'\g<1>[^/]*')
+        spec_str += '|'.join(
+            exclude_slash(fnmatch.translate(x)) if wildcards else x + '$'
+            for x in _ensure_list(filename)
+        )
 
     # If matching revision name, add to regex string
     if not revision_last_before:
@@ -507,7 +536,7 @@ 
    Source code for one.util
                 continue
         if wildcards:
             # Convert to regex, remove \\Z which asserts end of string
-            v = (fnmatch.translate(x).replace('\\Z', '') for x in ensure_list(v))
+            v = (fnmatch.translate(x).replace('\\Z', '') for x in _ensure_list(v))
         if not isinstance(v, str):
             regex_args[k] = '|'.join(v)  # logical OR
 
@@ -522,36 +551,40 @@ 
    Source code for one.util
             qc_match &= all_datasets['qc'].ne('NOT_SET')
 
     # Filter datasets on path and QC
-    match = all_datasets[path_match & qc_match]
+    match = all_datasets[path_match & qc_match].copy()
     if len(match) == 0 or not (revision_last_before or assert_unique):
         return match
 
-    revisions = [rel_path_parts(x)[1] or '' for x in match.rel_path.values]
+    # Extract revision to separate column
+    if 'revision' not in match.columns:
+        match['revision'] = match.rel_path.map(lambda x: rel_path_parts(x)[1] or '')
     if assert_unique:
         collections = set(rel_path_parts(x)[0] or '' for x in match.rel_path.values)
         if len(collections) > 1:
             _list = '"' + '", "'.join(collections) + '"'
             raise alferr.ALFMultipleCollectionsFound(_list)
         if not revision_last_before:
-            if filename and len(match) > 1:
+            if len(set(match['revision'])) > 1:
+                _list = '"' + '", "'.join(set(match['revision'])) + '"'
+                raise alferr.ALFMultipleRevisionsFound(_list)
+            if len(match) > 1:
                 _list = '"' + '", "'.join(match['rel_path']) + '"'
                 raise alferr.ALFMultipleObjectsFound(_list)
-            if len(set(revisions)) > 1:
-                _list = '"' + '", "'.join(set(revisions)) + '"'
-                raise alferr.ALFMultipleRevisionsFound(_list)
             else:
                 return match
-        elif filename and len(set(revisions)) != len(revisions):
-            _list = '"' + '", "'.join(match['rel_path']) + '"'
-            raise alferr.ALFMultipleObjectsFound(_list)
 
-    return filter_revision_last_before(match, revision, assert_unique=assert_unique)
    
+    match = filter_revision_last_before(match, revision, assert_unique=assert_unique)
+    if assert_unique and len(match) > 1:
+        _list = '"' + '", "'.join(match['rel_path']) + '"'
+        raise alferr.ALFMultipleObjectsFound(_list)
+    return match
    
 
 
 
 
    
 [docs]
-def filter_revision_last_before(datasets, revision=None, assert_unique=True):
+def filter_revision_last_before(
+        datasets, revision=None, assert_unique=True, assert_consistent=False):
     """
     Filter datasets by revision, returning previous revision in ordered list if revision
     doesn't exactly match.
@@ -565,43 +598,80 @@ 
    Source code for one.util
         assert_unique : bool
         When true an alferr.ALFMultipleRevisionsFound exception is raised when multiple
         default revisions are found; an alferr.ALFError when no default revision is found.
+    assert_consistent : bool
+        Will raise alferr.ALFMultipleRevisionsFound if matching revision is different between
+        datasets.
 
     Returns
     -------
     pd.DataFrame
         A datasets DataFrame with 0 or 1 row per unique dataset.
+
+    Raises
+    ------
+    one.alf.exceptions.ALFMultipleRevisionsFound
+        When the 'default_revision' column exists and no revision is passed, this error means that
+        one or more matching datasets have multiple revisions specified as the default. This is
+        typically an error in the cache table itself as all datasets should have one and only one
+        default revision specified.
+        When `assert_consistent` is True, this error may mean that the matching datasets have
+        mixed revisions.
+    one.alf.exceptions.ALFMultipleObjectsFound
+        The matching list of datasets have more than one unique filename and both `assert_unique`
+        and `revision_last_before` are true.
+    one.alf.exceptions.ALFError
+        When both `assert_unique` and `revision_last_before` is true, and a 'default_revision'
+        column exists but `revision` is None; one or more matching datasets have no default
+        revision specified. This is typically an error in the cache table itself as all datasets
+        should have one and only one default revision specified.
+
+    Notes
+    -----
+    - When `revision` is not None, the default revision value is not used. If an older revision is
+      the default one (uncommon), passing in a revision may lead to a newer revision being returned
+      than if revision is None.
+    - A view is returned if a revision column is present, otherwise a copy is returned.
     """
     def _last_before(df):
         """Takes a DataFrame with only one dataset and multiple revisions, returns matching row"""
-        if revision is None and 'default_revision' in df.columns:
-            if assert_unique and sum(df.default_revision) > 1:
-                revisions = df['revision'][df.default_revision.values]
-                rev_list = '"' + '", "'.join(revisions) + '"'
-                raise alferr.ALFMultipleRevisionsFound(rev_list)
-            if sum(df.default_revision) == 1:
-                return df[df.default_revision]
-            if len(df) == 1:  # This may be the case when called from load_datasets
-                return df  # It's not the default be there's only one available revision
-            # default_revision column all False; default isn't copied to remote repository
+        if revision is None:
             dset_name = df['rel_path'].iloc[0]
-            if assert_unique:
-                raise alferr.ALFError(f'No default revision for dataset {dset_name}')
-            else:
-                logger.warning(f'No default revision for dataset {dset_name}; using most recent')
+            if 'default_revision' in df.columns:
+                if assert_unique and sum(df.default_revision) > 1:
+                    revisions = df['revision'][df.default_revision.values]
+                    rev_list = '"' + '", "'.join(revisions) + '"'
+                    raise alferr.ALFMultipleRevisionsFound(rev_list)
+                if sum(df.default_revision) == 1:
+                    return df[df.default_revision]
+                if len(df) == 1:  # This may be the case when called from load_datasets
+                    return df  # It's not the default but there's only one available revision
+                # default_revision column all False; default isn't copied to remote repository
+                if assert_unique:
+                    raise alferr.ALFError(f'No default revision for dataset {dset_name}')
+            warnings.warn(
+                f'No default revision for dataset {dset_name}; using most recent',
+                alferr.ALFWarning)
         # Compare revisions lexicographically
-        if assert_unique and len(df['revision'].unique()) > 1:
-            rev_list = '"' + '", "'.join(df['revision'].unique()) + '"'
-            raise alferr.ALFMultipleRevisionsFound(rev_list)
-        # Square brackets forces 1 row DataFrame returned instead of Series
         idx = index_last_before(df['revision'].tolist(), revision)
-        # return df.iloc[slice(0, 0) if idx is None else [idx], :]
+        # Square brackets forces 1 row DataFrame returned instead of Series
         return df.iloc[slice(0, 0) if idx is None else [idx], :]
 
-    with pd.option_context('mode.chained_assignment', None):  # FIXME Explicitly copy?
-        datasets['revision'] = [rel_path_parts(x)[1] or '' for x in datasets.rel_path]
+    # Extract revision to separate column
+    if 'revision' not in datasets.columns:
+        with pd.option_context('mode.chained_assignment', None):  # FIXME Explicitly copy?
+            datasets['revision'] = datasets.rel_path.map(lambda x: rel_path_parts(x)[1] or '')
+    # Group by relative path (sans revision)
     groups = datasets.rel_path.str.replace('#.*#/', '', regex=True).values
     grouped = datasets.groupby(groups, group_keys=False)
-    return grouped.apply(_last_before)
    
+    filtered = grouped.apply(_last_before)
+    # Raise if matching revision is different between datasets
+    if len(filtered['revision'].unique()) > 1:
+        rev_list = '"' + '", "'.join(filtered['revision'].unique()) + '"'
+        if assert_consistent:
+            raise alferr.ALFMultipleRevisionsFound(rev_list)
+        else:
+            warnings.warn(f'Multiple revisions: {rev_list}', alferr.ALFWarning)
+    return filtered
    
 
 
 
@@ -662,7 +732,10 @@ 
    Source code for one.util
     [docs]
 def ensure_list(value):
     """Ensure input is a list."""
-    return [value] if isinstance(value, (str, dict)) or not isinstance(value, Iterable) else value
    
+    warnings.warn(
+        'one.util.ensure_list is deprecated, use iblutil.util.ensure_list instead',
+        DeprecationWarning)
+    return _ensure_list(value)
    
 
 
 
@@ -759,6 +832,8 @@ 
    Source code for one.util
         if name == 'datasets' and min_version < version.Version('2.7.0') and 'qc' not in table.columns:
         qc = pd.Categorical.from_codes(np.zeros(len(table.index), dtype=int), dtype=QC_TYPE)
         table = table.assign(qc=qc)
+    if name == 'datasets' and 'session_path' in table.columns:
+        table = table.drop('session_path', axis=1)
     return table
    
 
 
    
diff --git a/_modules/one/webclient.html b/_modules/one/webclient.html
index 14cd0762..20f3d528 100644
--- a/_modules/one/webclient.html
+++ b/_modules/one/webclient.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   one.webclient — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -163,7 +161,7 @@ 
    Source code for one.webclient
     import one.params
 from iblutil.io import hashfile
 from iblutil.io.params import set_hidden
-from one.util import ensure_list
+from iblutil.util import ensure_list
 import concurrent.futures
 _logger = logging.getLogger(__name__)
 
@@ -325,9 +323,12 @@ 
    Source code for one.webclient
         def __getitem__(self, item):
         if isinstance(item, slice):
             while None in self._cache[item]:
-                self.populate(item.start + self._cache[item].index(None))
+                # If slice start index is -ve, convert to +ve index
+                i = self.count + item.start if item.start < 0 else item.start
+                self.populate(i + self._cache[item].index(None))
         elif self._cache[item] is None:
-            self.populate(item)
+            # If index is -ve, convert to +ve
+            self.populate(self.count + item if item < 0 else item)
         return self._cache[item]
 
     def populate(self, idx):
@@ -779,6 +780,11 @@ 
    Source code for one.webclient
             if username is None and not self.silent:
             username = input('Enter Alyx username:')
 
+        # If user passes in a password, force re-authentication even if token cached
+        if password is not None:
+            if not force:
+                _logger.debug('Forcing token request with provided password')
+            force = True
         # Check if token cached
         if not force and getattr(self._par, 'TOKEN', False) and username in self._par.TOKEN:
             self._token = self._par.TOKEN[username]
@@ -791,8 +797,17 @@ 
    Source code for one.webclient
             # Get password
         if password is None:
             password = getattr(self._par, 'ALYX_PWD', None)
-        if password is None and not self.silent:
-            password = getpass(f'Enter Alyx password for "{username}":')
+        if password is None:
+            if self.silent:
+                warnings.warn(
+                    'No password or cached token in silent mode. '
+                    'Please run the following to re-authenticate:\n\t'
+                    'AlyxClient(silent=False).authenticate'
+                    '(username=<username>, force=True)', UserWarning)
+            else:
+                password = getpass(f'Enter Alyx password for "{username}":')
+        # Remove previous token
+        self._clear_token(username)
         try:
             credentials = {'username': username, 'password': password}
             rep = requests.post(self.base_url + '/auth-token', data=credentials)
@@ -830,16 +845,12 @@ 
    Source code for one.webclient
                 print(f'Connected to {self.base_url} as user "{self.user}"')
    
 
 
-
    
-[docs]
-    def logout(self):
-        """Log out from Alyx.
-        Deletes the cached authentication token for the currently logged-in user.
+    def _clear_token(self, username):
+        """Remove auth token from client params.
+
+        Deletes the cached authentication token for a given user.
         """
-        if not self.is_logged_in:
-            return
         par = one.params.get(client=self.base_url, silent=True)
-        username = self.user
         # Remove token from cache
         if getattr(par, 'TOKEN', False) and username in par.TOKEN:
             del par.TOKEN[username]
@@ -848,10 +859,22 @@ 
    Source code for one.webclient
             if getattr(self._par, 'TOKEN', False) and username in self._par.TOKEN:
             del self._par.TOKEN[username]
         # Remove token from object
-        self.user = None
         self._token = None
         if self._headers and 'Authorization' in self._headers:
             del self._headers['Authorization']
+
+
    
+[docs]
+    def logout(self):
+        """Log out from Alyx.
+
+        Deletes the cached authentication token for the currently logged-in user
+        and clears the REST cache.
+        """
+        if not self.is_logged_in:
+            return
+        self._clear_token(username := self.user)
+        self.user = None
         self.clear_rest_cache()
         if not self.silent:
             print(f'{username} logged out from {self.base_url}')
    
diff --git a/_sources/_autosummary/one.alf.exceptions.rst.txt b/_sources/_autosummary/one.alf.exceptions.rst.txt
index e2cb2aa8..b224a8b6 100644
--- a/_sources/_autosummary/one.alf.exceptions.rst.txt
+++ b/_sources/_autosummary/one.alf.exceptions.rst.txt
@@ -26,6 +26,7 @@ one.alf.exceptions
       ALFMultipleObjectsFound
       ALFMultipleRevisionsFound
       ALFObjectNotFound
+      ALFWarning
       AlyxSubjectNotFound
    
    
diff --git a/_sources/one_installation.md.txt b/_sources/one_installation.md.txt
index b4f8ba81..6296523e 100644
--- a/_sources/one_installation.md.txt
+++ b/_sources/one_installation.md.txt
@@ -61,7 +61,7 @@ one = ONE()
 To change your default database, or re-run the setup for a given database, you can use the following
 
 ```python
-ONE._setup(base_url='https://test.alyx.internationalbrainlab.org', make_default=True)
+ONE.setup(base_url='https://test.alyx.internationalbrainlab.org', make_default=True)
 ```
 
 ## 4. Update
diff --git a/_static/basic.css b/_static/basic.css
index f316efcb..7ebbd6d0 100644
--- a/_static/basic.css
+++ b/_static/basic.css
@@ -1,12 +1,5 @@
 /*
- * basic.css
- * ~~~~~~~~~
- *
  * Sphinx stylesheet -- basic theme.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
  */
 
 /* -- main layout ----------------------------------------------------------- */
@@ -115,15 +108,11 @@ img {
 /* -- search page ----------------------------------------------------------- */
 
 ul.search {
-    margin: 10px 0 0 20px;
-    padding: 0;
+    margin-top: 10px;
 }
 
 ul.search li {
-    padding: 5px 0 5px 20px;
-    background-image: url(file.png);
-    background-repeat: no-repeat;
-    background-position: 0 7px;
+    padding: 5px 0;
 }
 
 ul.search li a {
diff --git a/_static/css/badge_only.css b/_static/css/badge_only.css
index c718cee4..88ba55b9 100644
--- a/_static/css/badge_only.css
+++ b/_static/css/badge_only.css
@@ -1 +1 @@
-.clearfix{*zoom:1}.clearfix:after,.clearfix:before{display:table;content:""}.clearfix:after{clear:both}@font-face{font-family:FontAwesome;font-style:normal;font-weight:400;src:url(fonts/fontawesome-webfont.eot?674f50d287a8c48dc19ba404d20fe713?#iefix) format("embedded-opentype"),url(fonts/fontawesome-webfont.woff2?af7ae505a9eed503f8b8e6982036873e) format("woff2"),url(fonts/fontawesome-webfont.woff?fee66e712a8a08eef5805a46892932ad) format("woff"),url(fonts/fontawesome-webfont.ttf?b06871f281fee6b241d60582ae9369b9) format("truetype"),url(fonts/fontawesome-webfont.svg?912ec66d7572ff821749319396470bde#FontAwesome) format("svg")}.fa:before{font-family:FontAwesome;font-style:normal;font-weight:400;line-height:1}.fa:before,a .fa{text-decoration:inherit}.fa:before,a .fa,li .fa{display:inline-block}li .fa-large:before{width:1.875em}ul.fas{list-style-type:none;margin-left:2em;text-indent:-.8em}ul.fas li .fa{width:.8em}ul.fas li .fa-large:before{vertical-align:baseline}.fa-book:before,.icon-book:before{content:"\f02d"}.fa-caret-down:before,.icon-caret-down:before{content:"\f0d7"}.fa-caret-up:before,.icon-caret-up:before{content:"\f0d8"}.fa-caret-left:before,.icon-caret-left:before{content:"\f0d9"}.fa-caret-right:before,.icon-caret-right:before{content:"\f0da"}.rst-versions{position:fixed;bottom:0;left:0;width:300px;color:#fcfcfc;background:#1f1d1d;font-family:Lato,proxima-nova,Helvetica Neue,Arial,sans-serif;z-index:400}.rst-versions a{color:#2980b9;text-decoration:none}.rst-versions .rst-badge-small{display:none}.rst-versions .rst-current-version{padding:12px;background-color:#272525;display:block;text-align:right;font-size:90%;cursor:pointer;color:#27ae60}.rst-versions .rst-current-version:after{clear:both;content:"";display:block}.rst-versions .rst-current-version .fa{color:#fcfcfc}.rst-versions .rst-current-version .fa-book,.rst-versions .rst-current-version .icon-book{float:left}.rst-versions .rst-current-version.rst-out-of-date{background-color:#e74c3c;color:#fff}.rst-versions .rst-current-version.rst-active-old-version{background-color:#f1c40f;color:#000}.rst-versions.shift-up{height:auto;max-height:100%;overflow-y:scroll}.rst-versions.shift-up .rst-other-versions{display:block}.rst-versions .rst-other-versions{font-size:90%;padding:12px;color:grey;display:none}.rst-versions .rst-other-versions hr{display:block;height:1px;border:0;margin:20px 0;padding:0;border-top:1px solid #413d3d}.rst-versions .rst-other-versions dd{display:inline-block;margin:0}.rst-versions .rst-other-versions dd a{display:inline-block;padding:6px;color:#fcfcfc}.rst-versions.rst-badge{width:auto;bottom:20px;right:20px;left:auto;border:none;max-width:300px;max-height:90%}.rst-versions.rst-badge .fa-book,.rst-versions.rst-badge .icon-book{float:none;line-height:30px}.rst-versions.rst-badge.shift-up .rst-current-version{text-align:right}.rst-versions.rst-badge.shift-up .rst-current-version .fa-book,.rst-versions.rst-badge.shift-up .rst-current-version .icon-book{float:left}.rst-versions.rst-badge>.rst-current-version{width:auto;height:30px;line-height:30px;padding:0 6px;display:block;text-align:center}@media screen and (max-width:768px){.rst-versions{width:85%;display:none}.rst-versions.shift{display:block}}
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dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple)>dt:first-child{margin-top:0}html.writer-html4 .rst-content dl:not(.docutils) code.descclassname,html.writer-html4 .rst-content dl:not(.docutils) code.descname,html.writer-html4 .rst-content dl:not(.docutils) tt.descclassname,html.writer-html4 .rst-content dl:not(.docutils) tt.descname,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) code.descclassname,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) code.descname,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) tt.descclassname,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) tt.descname{background-color:transparent;border:none;padding:0;font-size:100%!important}html.writer-html4 .rst-content dl:not(.docutils) code.descname,html.writer-html4 .rst-content dl:not(.docutils) tt.descname,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) code.descname,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) tt.descname{font-weight:700}html.writer-html4 .rst-content dl:not(.docutils) .optional,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) .optional{display:inline-block;padding:0 4px;color:#000;font-weight:700}html.writer-html4 .rst-content dl:not(.docutils) .property,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) .property{display:inline-block;padding-right:8px;max-width:100%}html.writer-html4 .rst-content dl:not(.docutils) .k,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) .k{font-style:italic}html.writer-html4 .rst-content dl:not(.docutils) .descclassname,html.writer-html4 .rst-content dl:not(.docutils) .descname,html.writer-html4 .rst-content dl:not(.docutils) .sig-name,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) .descclassname,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) .descname,html.writer-html5 .rst-content dl[class]:not(.option-list):not(.field-list):not(.footnote):not(.citation):not(.glossary):not(.simple) .sig-name{font-family:SFMono-Regular,Menlo,Monaco,Consolas,Liberation Mono,Courier New,Courier,monospace;color:#000}.rst-content .viewcode-back,.rst-content .viewcode-link{display:inline-block;color:#27ae60;font-size:80%;padding-left:24px}.rst-content .viewcode-back{display:block;float:right}.rst-content p.rubric{margin-bottom:12px;font-weight:700}.rst-content code.download,.rst-content tt.download{background:inherit;padding:inherit;font-weight:400;font-family:inherit;font-size:inherit;color:inherit;border:inherit;white-space:inherit}.rst-content code.download span:first-child,.rst-content tt.download span:first-child{-webkit-font-smoothing:subpixel-antialiased}.rst-content code.download span:first-child:before,.rst-content tt.download span:first-child:before{margin-right:4px}.rst-content .guilabel,.rst-content .menuselection{font-size:80%;font-weight:700;border-radius:4px;padding:2.4px 6px;margin:auto 2px}.rst-content .guilabel,.rst-content .menuselection{border:1px solid #7fbbe3;background:#e7f2fa}.rst-content :not(dl.option-list)>:not(dt):not(kbd):not(.kbd)>.kbd,.rst-content :not(dl.option-list)>:not(dt):not(kbd):not(.kbd)>kbd{color:inherit;font-size:80%;background-color:#fff;border:1px solid #a6a6a6;border-radius:4px;box-shadow:0 2px grey;padding:2.4px 6px;margin:auto 0}.rst-content .versionmodified{font-style:italic}@media screen and (max-width:480px){.rst-content .sidebar{width:100%}}span[id*=MathJax-Span]{color:#404040}.math{text-align:center}@font-face{font-family:Lato;src:url(fonts/lato-normal.woff2?bd03a2cc277bbbc338d464e679fe9942) format("woff2"),url(fonts/lato-normal.woff?27bd77b9162d388cb8d4c4217c7c5e2a) format("woff");font-weight:400;font-style:normal;font-display:block}@font-face{font-family:Lato;src:url(fonts/lato-bold.woff2?cccb897485813c7c256901dbca54ecf2) format("woff2"),url(fonts/lato-bold.woff?d878b6c29b10beca227e9eef4246111b) format("woff");font-weight:700;font-style:normal;font-display:block}@font-face{font-family:Lato;src:url(fonts/lato-bold-italic.woff2?0b6bb6725576b072c5d0b02ecdd1900d) format("woff2"),url(fonts/lato-bold-italic.woff?9c7e4e9eb485b4a121c760e61bc3707c) format("woff");font-weight:700;font-style:italic;font-display:block}@font-face{font-family:Lato;src:url(fonts/lato-normal-italic.woff2?4eb103b4d12be57cb1d040ed5e162e9d) format("woff2"),url(fonts/lato-normal-italic.woff?f28f2d6482446544ef1ea1ccc6dd5892) format("woff");font-weight:400;font-style:italic;font-display:block}@font-face{font-family:Roboto Slab;font-style:normal;font-weight:400;src:url(fonts/Roboto-Slab-Regular.woff2?7abf5b8d04d26a2cafea937019bca958) format("woff2"),url(fonts/Roboto-Slab-Regular.woff?c1be9284088d487c5e3ff0a10a92e58c) format("woff");font-display:block}@font-face{font-family:Roboto Slab;font-style:normal;font-weight:700;src:url(fonts/Roboto-Slab-Bold.woff2?9984f4a9bda09be08e83f2506954adbe) format("woff2"),url(fonts/Roboto-Slab-Bold.woff?bed5564a116b05148e3b3bea6fb1162a) format("woff");font-display:block}
\ No newline at end of file
diff --git a/_static/doctools.js b/_static/doctools.js
index 4d67807d..0398ebb9 100644
--- a/_static/doctools.js
+++ b/_static/doctools.js
@@ -1,12 +1,5 @@
 /*
- * doctools.js
- * ~~~~~~~~~~~
- *
  * Base JavaScript utilities for all Sphinx HTML documentation.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
  */
 "use strict";
 
diff --git a/_static/js/versions.js b/_static/js/versions.js
new file mode 100644
index 00000000..818bc996
--- /dev/null
+++ b/_static/js/versions.js
@@ -0,0 +1,224 @@
+const themeFlyoutDisplay = "hidden";
+const themeVersionSelector = "True";
+const themeLanguageSelector = "True";
+
+if (themeFlyoutDisplay === "attached") {
+  function renderLanguages(config) {
+    if (!config.projects.translations.length) {
+      return "";
+    }
+
+    const languagesHTML = `
+      
    
+        
    Languages
    
+        ${config.projects.translations
+          .map(
+            (translation) => `
+        
    
+          ${translation.language.code}
+        
    
+        `,
+          )
+          .join("\n")}
+      
    
+    `;
+    return languagesHTML;
+  }
+
+  function renderVersions(config) {
+    if (!config.versions.active.length) {
+      return "";
+    }
+    const versionsHTML = `
+      
    
+        
    Versions
    
+        ${config.versions.active
+          .map(
+            (version) => `
+        
    
+          ${version.slug}
+        
    
+        `,
+          )
+          .join("\n")}
+      
    
+    `;
+    return versionsHTML;
+  }
+
+  function renderDownloads(config) {
+    if (!Object.keys(config.versions.current.downloads).length) {
+      return "";
+    }
+    const downloadsNameDisplay = {
+      pdf: "PDF",
+      epub: "Epub",
+      htmlzip: "HTML",
+    };
+
+    const downloadsHTML = `
+      
    
+        
    Downloads
    
+        ${Object.entries(config.versions.current.downloads)
+          .map(
+            ([name, url]) => `
+          
    
+            ${downloadsNameDisplay[name]}
+          
    
+        `,
+          )
+          .join("\n")}
+      
    
+    `;
+    return downloadsHTML;
+  }
+
+  document.addEventListener("readthedocs-addons-data-ready", function (event) {
+    const config = event.detail.data();
+
+    const flyout = `
+      
    
+        
+           Read the Docs
+          v: ${config.versions.current.slug}
+          
+        
+        
    
+          
    
+            ${renderLanguages(config)}
+            ${renderVersions(config)}
+            ${renderDownloads(config)}
+            
    
+              
    On Read the Docs
    
+              
    
+                Project Home
+              
    
+              
    
+                Builds
+              
    
+              
    
+                Downloads
+              
    
+            
    
+            
    
+              
    Search
    
+              
    
+                
    
+                  
+                
    
+              
    
+            
    
+            
    
+            
+              Hosted by Read the Docs
+            
+          
    
+        
    
+    `;
+
+    // Inject the generated flyout into the body HTML element.
+    document.body.insertAdjacentHTML("beforeend", flyout);
+
+    // Trigger the Read the Docs Addons Search modal when clicking on the "Search docs" input from inside the flyout.
+    document
+      .querySelector("#flyout-search-form")
+      .addEventListener("focusin", () => {
+        const event = new CustomEvent("readthedocs-search-show");
+        document.dispatchEvent(event);
+      });
+  })
+}
+
+if (themeLanguageSelector || themeVersionSelector) {
+  function onSelectorSwitch(event) {
+    const option = event.target.selectedIndex;
+    const item = event.target.options[option];
+    window.location.href = item.dataset.url;
+  }
+
+  document.addEventListener("readthedocs-addons-data-ready", function (event) {
+    const config = event.detail.data();
+
+    const versionSwitch = document.querySelector(
+      "div.switch-menus > div.version-switch",
+    );
+    if (themeVersionSelector) {
+      let versions = config.versions.active;
+      if (config.versions.current.hidden || config.versions.current.type === "external") {
+        versions.unshift(config.versions.current);
+      }
+      const versionSelect = `
+    
+  `;
+
+      versionSwitch.innerHTML = versionSelect;
+      versionSwitch.firstElementChild.addEventListener("change", onSelectorSwitch);
+    }
+
+    const languageSwitch = document.querySelector(
+      "div.switch-menus > div.language-switch",
+    );
+
+    if (themeLanguageSelector) {
+      if (config.projects.translations.length) {
+        // Add the current language to the options on the selector
+        let languages = config.projects.translations.concat(
+          config.projects.current,
+        );
+        languages = languages.sort((a, b) =>
+          a.language.name.localeCompare(b.language.name),
+        );
+
+        const languageSelect = `
+      
+    `;
+
+        languageSwitch.innerHTML = languageSelect;
+        languageSwitch.firstElementChild.addEventListener("change", onSelectorSwitch);
+      }
+      else {
+        languageSwitch.remove();
+      }
+    }
+  });
+}
+
+document.addEventListener("readthedocs-addons-data-ready", function (event) {
+  // Trigger the Read the Docs Addons Search modal when clicking on "Search docs" input from the topnav.
+  document
+    .querySelector("[role='search'] input")
+    .addEventListener("focusin", () => {
+      const event = new CustomEvent("readthedocs-search-show");
+      document.dispatchEvent(event);
+    });
+});
\ No newline at end of file
diff --git a/_static/language_data.js b/_static/language_data.js
index 367b8ed8..c7fe6c6f 100644
--- a/_static/language_data.js
+++ b/_static/language_data.js
@@ -1,13 +1,6 @@
 /*
- * language_data.js
- * ~~~~~~~~~~~~~~~~
- *
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
  */
 
 var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
diff --git a/_static/searchtools.js b/_static/searchtools.js
index b08d58c9..2c774d17 100644
--- a/_static/searchtools.js
+++ b/_static/searchtools.js
@@ -1,12 +1,5 @@
 /*
- * searchtools.js
- * ~~~~~~~~~~~~~~~~
- *
  * Sphinx JavaScript utilities for the full-text search.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
  */
 "use strict";
 
@@ -20,7 +13,7 @@ if (typeof Scorer === "undefined") {
     // and returns the new score.
     /*
     score: result => {
-      const [docname, title, anchor, descr, score, filename] = result
+      const [docname, title, anchor, descr, score, filename, kind] = result
       return score
     },
     */
@@ -47,6 +40,14 @@ if (typeof Scorer === "undefined") {
   };
 }
 
+// Global search result kind enum, used by themes to style search results.
+class SearchResultKind {
+    static get index() { return  "index"; }
+    static get object() { return "object"; }
+    static get text() { return "text"; }
+    static get title() { return "title"; }
+}
+
 const _removeChildren = (element) => {
   while (element && element.lastChild) element.removeChild(element.lastChild);
 };
@@ -64,9 +65,13 @@ const _displayItem = (item, searchTerms, highlightTerms) => {
   const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY;
   const contentRoot = document.documentElement.dataset.content_root;
 
-  const [docName, title, anchor, descr, score, _filename] = item;
+  const [docName, title, anchor, descr, score, _filename, kind] = item;
 
   let listItem = document.createElement("li");
+  // Add a class representing the item's type:
+  // can be used by a theme's CSS selector for styling
+  // See SearchResultKind for the class names.
+  listItem.classList.add(`kind-${kind}`);
   let requestUrl;
   let linkUrl;
   if (docBuilder === "dirhtml") {
@@ -115,8 +120,10 @@ const _finishSearch = (resultCount) => {
       "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories."
     );
   else
-    Search.status.innerText = _(
-      "Search finished, found ${resultCount} page(s) matching the search query."
+    Search.status.innerText = Documentation.ngettext(
+      "Search finished, found one page matching the search query.",
+      "Search finished, found ${resultCount} pages matching the search query.",
+      resultCount,
     ).replace('${resultCount}', resultCount);
 };
 const _displayNextItem = (
@@ -138,7 +145,7 @@ const _displayNextItem = (
   else _finishSearch(resultCount);
 };
 // Helper function used by query() to order search results.
-// Each input is an array of [docname, title, anchor, descr, score, filename].
+// Each input is an array of [docname, title, anchor, descr, score, filename, kind].
 // Order the results by score (in opposite order of appearance, since the
 // `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
 const _orderResultsByScoreThenName = (a, b) => {
@@ -248,6 +255,7 @@ const Search = {
     searchSummary.classList.add("search-summary");
     searchSummary.innerText = "";
     const searchList = document.createElement("ul");
+    searchList.setAttribute("role", "list");
     searchList.classList.add("search");
 
     const out = document.getElementById("search-results");
@@ -318,7 +326,7 @@ const Search = {
     const indexEntries = Search._index.indexentries;
 
     // Collect multiple result groups to be sorted separately and then ordered.
-    // Each is an array of [docname, title, anchor, descr, score, filename].
+    // Each is an array of [docname, title, anchor, descr, score, filename, kind].
     const normalResults = [];
     const nonMainIndexResults = [];
 
@@ -337,6 +345,7 @@ const Search = {
             null,
             score + boost,
             filenames[file],
+            SearchResultKind.title,
           ]);
         }
       }
@@ -354,6 +363,7 @@ const Search = {
             null,
             score,
             filenames[file],
+            SearchResultKind.index,
           ];
           if (isMain) {
             normalResults.push(result);
@@ -475,6 +485,7 @@ const Search = {
         descr,
         score,
         filenames[match[0]],
+        SearchResultKind.object,
       ]);
     };
     Object.keys(objects).forEach((prefix) =>
@@ -585,6 +596,7 @@ const Search = {
         null,
         score,
         filenames[file],
+        SearchResultKind.text,
       ]);
     }
     return results;
diff --git a/alf_intro.html b/alf_intro.html
index 93558748..93824f3d 100644
--- a/alf_intro.html
+++ b/alf_intro.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -6,23 +8,19 @@
   
   ALyx Filenames (ALF) — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
     
diff --git a/api_reference.html b/api_reference.html
index 4d382d5c..a280670f 100644
--- a/api_reference.html
+++ b/api_reference.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -6,23 +8,19 @@
   
   API Reference — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
     
diff --git a/contributing.html b/contributing.html
index cac9b737..d812ee77 100644
--- a/contributing.html
+++ b/contributing.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -6,23 +8,19 @@
   
   Contributing to documentation — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
     
diff --git a/genindex.html b/genindex.html
index 8bd7d15e..2293b3c7 100644
--- a/genindex.html
+++ b/genindex.html
@@ -1,3 +1,5 @@
+
+
 
 
 
@@ -5,23 +7,19 @@
   
   Index — ONE  documentation
       
-      
+      
       
       
 
   
-  
-  
-        
-        
-        
-        
-        
-        
-        
-        
+      
+      
+      
+      
+      
+      
+      
+      
     
     
      
@@ -152,14 +150,16 @@ 
    A
    
 
       
  • ALFObjectNotFound
 
    • 
+      
  • ALFWarning
+
    • 
+  
+  
-