Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

"Interesting" output for annexed files #320

Open
Remi-Gau opened this issue Oct 8, 2022 · 3 comments
Open

"Interesting" output for annexed files #320

Remi-Gau opened this issue Oct 8, 2022 · 3 comments

Comments

@Remi-Gau
Copy link

Remi-Gau commented Oct 8, 2022

Working on a dataset where some text files were annexed with datalad.

In this case bidsmri2nidm seems to go for the annexed content rather than giving something human readable

You will now be asked a series of questions to annotate your term: 
/annex/objects/MD5E-s115--0ccac146d107ecea40039e0fb1e1806c.tsv
@dbkeator
Copy link
Contributor

Hi,
I'm not sure of the distinction. I'm not much of a datalad power user.

We added this functionality consulting with Yarik. I'm sure things have changed. Here's the code where this gets set: https://github.com/incf-nidash/PyNIDM/blob/master/nidm/experiment/Utils.py#L2098

@yarikoptic
Copy link
Member

@Remi-Gau didn't look inside or in detail yet, but as you might have learned since then -- this smells like git-annex committed a .tsv file in unlocked form, so whenever it is not present - it is a text file with that content, but then when get-ed - would be a regular text file with target content.

@Remi-Gau
Copy link
Author

Remi-Gau commented May 1, 2023

yeah would need to double check... I have not gone back to this in a while though: It has been put on a back burner that was itself moved into the attic...

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants