From bc8bbfc8f8110644674cbc693eea087676822703 Mon Sep 17 00:00:00 2001 From: robinredX Date: Thu, 11 Apr 2024 14:39:55 +0200 Subject: [PATCH] update-readme --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index ab878e7..156307d 100644 --- a/README.md +++ b/README.md @@ -66,8 +66,11 @@ Interactive tutorials including required data are available as part of this repo ### A note on the supported formats bulk RNAseq/Proteomics: A tab seperated file (gene symbols in rows, sample names in columns), or an h5ad compatible with Scanpy >=1.8.0. + scRNAseq: An h5ad compatible with Scanpy >=1.8.0. The cell metadata (.obs) must contain cell type labels (By default in column cell_type) + Spatial transcriptomics: A h5ad compatible with Scanpy >=1.8.0. + Gene ID formats should match between scRNAseq and bulk/spatial data but can be anything (HGNC symbols, ENSEMBL etc.). The code is also available via [Zenodo](https://zenodo.org/doi/10.5281/zenodo.10570403)