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Improve variant pre-selection script #17

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leonschuetz opened this issue Nov 9, 2022 · 0 comments

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leonschuetz commented Nov 9, 2022

Remove/penalize variants which are ...
- in regions with high noise (many mismatches) -> requires BAM access
- near germline variants -> requires access to germline calls
- contain mq=0 reads in the call -> requires BAM access
Do not fillup with bad variants

leonschuetz added the enhancement label

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