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support tumor only samples for select_monitoring_variants.py? #15

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leonschuetz opened this issue Aug 13, 2021 · 1 comment
Open

support tumor only samples for select_monitoring_variants.py? #15

leonschuetz opened this issue Aug 13, 2021 · 1 comment
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@leonschuetz
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Currently only tumor-normal VCFs are supported.
@leonschuetz
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Current error:

Stderr of '..../git/umiVar2//venv/bin/python':
    Traceback (most recent call last):
      File "..../git/umiVar2//select_monitoring_variants.py", line 402, in <module>
        main()
      File "..../git/umiVar2//select_monitoring_variants.py", line 396, in main
        evaluator.evaluate_variants(input_ref_file)
      File "..../git/umiVar2//select_monitoring_variants.py", line 131, in evaluate_variants
        tumor_sample = vcf_column[10].split(":")
    IndexError: list index out of range

@leonschuetz leonschuetz added the question Further information is requested label Aug 13, 2021
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