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VcfExtractSamples tool help

VcfExtractSamples (2024_08-110-g317f43b9)

Extract one or several samples from a VCF file. Can also be used to re-order sample columns.

Mandatory parameters:
  -samples <string> Comma-separated list of samples to extract (in the given order).

Optional parameters:
  -in <file>        Input VCF file. If unset, reads from STDIN.
                    Default value: ''
  -out <file>       Output VCF list. If unset, writes to STDOUT.
                    Default value: ''

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

VcfExtractSamples changelog

VcfExtractSamples 2024_08-110-g317f43b9

2018-11-27 Initial implementation.

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