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FastqExtractBarcode.md

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FastqExtractBarcode tool help

FastqExtractBarcode (2024_08-110-g317f43b9)

Cuts bases from the beginning of reads and stores them in an additional fastq.

Mandatory parameters:
  -in <file>               input fastq file1.
  -out_main <string>       output filename for main fastq.

Optional parameters:
  -out_index <string>      output filename for index fastq.
                           Default value: 'index.fastq.gz'
  -cut <int>               number of bases from the beginning of reads to use as barcodes.
                           Default value: '0'
  -compression_level <int> Output FASTQ compression level from 1 (fastest) to 9 (best compression).
                           Default value: '1'

Special parameters:
  --help                   Shows this help and exits.
  --version                Prints version and exits.
  --changelog              Prints changeloge and exits.
  --tdx                    Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file]        Settings override file (no other settings files are used).

FastqExtractBarcode changelog

FastqExtractBarcode 2024_08-110-g317f43b9

2020-07-15 Added 'compression_level' parameter.

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