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FastqConcat tool help

FastqConcat (2024_08-110-g317f43b9)

Concatinates several FASTQ files into one output FASTQ file.

Mandatory parameters:
  -in <filelist>           Input (gzipped) FASTQ files.
  -out <file>              Output gzipped FASTQ file.

Optional parameters:
  -compression_level <int> Output FASTQ compression level from 1 (fastest) to 9 (best compression).
                           Default value: '1'
  -long_read               Support long reads (> 1kb).
                           Default value: 'false'

Special parameters:
  --help                   Shows this help and exits.
  --version                Prints version and exits.
  --changelog              Prints changeloge and exits.
  --tdx                    Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file]        Settings override file (no other settings files are used).

FastqConcat changelog

FastqConcat 2024_08-110-g317f43b9

2023-06-15 Added support for long reads.
2020-07-15 Added 'compression_level' parameter.
2019-04-08 Initial version of this tool

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