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BedIntersect tool help

BedIntersect (2024_08-113-g94a3b440)

Intersects the regions in two BED files.

Mandatory parameters:
  -in2 <file>       Second input BED file.

Optional parameters:
  -mode <enum>      Output mode: intersect of both files (intersect), original entry of file 1 (in) or original entry of file 2 (in2).
                    Default value: 'intersect'
                    Valid: 'intersect,in,in2'
  -in <file>        Input BED file. If unset, reads from STDIN.
                    Default value: ''
  -out <file>       Output BED file. If unset, writes to STDOUT.
                    Default value: ''

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

BedIntersect changelog

BedIntersect 2024_08-113-g94a3b440

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