From 46e01b425fdd69d0803339607138fb07e10c6edd Mon Sep 17 00:00:00 2001
From: Cesaire Joris Kuete Fouodo <fouodo@imbs.uni-luebeck.de>
Date: Sat, 29 Jun 2024 15:10:05 +0200
Subject: [PATCH] Revert "Coverage included"

This reverts commit 1b3195f607be8ba35f0b3c24a41f476b98ed37b2.
---
 .github/workflows/R-CMD-check.yaml   |  5 +++
 .github/workflows/test-coverage.yaml | 61 ----------------------------
 README.md                            |  1 +
 3 files changed, 6 insertions(+), 61 deletions(-)
 delete mode 100644 .github/workflows/test-coverage.yaml

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index 0f2fe08..bea12e8 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -50,3 +50,8 @@ jobs:
         with:
           upload-snapshots: true
           build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
+      - name: Test coverage
+        run: |
+          Rscript -e 'covr::codecov()'
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
deleted file mode 100644
index fefc52e..0000000
--- a/.github/workflows/test-coverage.yaml
+++ /dev/null
@@ -1,61 +0,0 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-on:
-  push:
-    branches: [main, master]
-  pull_request:
-    branches: [main, master]
-
-name: test-coverage
-
-permissions: read-all
-
-jobs:
-  test-coverage:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::covr, any::xml2
-          needs: coverage
-
-      - name: Test coverage
-        run: |
-          cov <- covr::package_coverage(
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
-          )
-          covr::to_cobertura(cov)
-        shell: Rscript {0}
-
-      - uses: codecov/codecov-action@v4
-        with:
-          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
-          file: ./cobertura.xml
-          plugin: noop
-          disable_search: true
-          token: ${{ secrets.CODECOV_TOKEN }}
-
-      - name: Show testthat output
-        if: always()
-        run: |
-          ## --------------------------------------------------------------------
-          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v4
-        with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package
diff --git a/README.md b/README.md
index 87cff3a..0a509af 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,7 @@
 <!-- badges: start -->
   [![R-CMD-check](https://github.com/imbs-hl/fuseMLR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/imbs-hl/fuseMLR/actions/workflows/R-CMD-check.yaml)
   [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
+  [![codecov](https://codecov.io/gh/username/repository/branch/main/graph/badge.svg)](https://codecov.io/gh/username/repository)
   [![CRAN downloads](http://www.r-pkg.org/badges/version/fuseMLR)](http://cranlogs.r-pkg.org/badges/grand-total/fuseMLR)
   [![Stack Overflow](https://img.shields.io/badge/stackoverflow-questions-orange.svg)](https://stackoverflow.com/questions/tagged/fuseMLR)
 <!-- badges: end -->