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pytest.yaml
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name: Test
on:
pull_request:
branches: [ main , "migrate-*"]
schedule:
# 05:00 UTC = 06:00 CET = 07:00 CEST
- cron: "0 5 * * *"
# Cancel previous runs that have not completed
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
jobs:
pytest:
strategy:
matrix:
os:
# - macos-latest
- ubuntu-latest
# - windows-latest
upstream:
# In each group:
# - Versions of ixmp and message_ix to test.
# - Latest supported Python version for those or other dependencies.
# - Extra dependencies, in particular fixed/maximum versions to resolve conficts.
# - dask[dataframe] >= 2024.3.0 requires dask-expr and in turn pandas >= 2.0.
# https://github.com/iiasa/message-ix-models/pull/156#issuecomment-2020152360
# - genno: upstream versions < 3.8.0 import genno.computations, removed in 1.25.0.
# https://github.com/iiasa/message-ix-models/pull/156
# - pytest: upstream versions < 3.9.0 use a hook argument removed in pytest 8.1.0.
# https://github.com/iiasa/message-ix-models/pull/155
#
# Minimum version given in pyproject.toml
# - version: v3.4.0
# python-version: "3.11"
# extra-deps: '"dask < 2024.3.0" "genno < 1.25" "pandas < 2.0" "pytest == 8.0.0"' #
# - version: v3.5.0
# python-version: "3.11"
# extra-deps: '"dask < 2024.3.0" "genno < 1.25" "pandas < 2.0" "pytest == 8.0.0"' #
# - version: v3.6.0
# python-version: "3.11"
# extra-deps: '"dask < 2024.3.0" "genno < 1.25" "pandas < 2.0" "pytest == 8.0.0"' #
# - version: v3.7.0
# python-version: "3.11"
# extra-deps: 'dask[dataframe] "genno < 1.25" "pytest == 8.0.0"' #
# # Latest released version
# - version: v3.8.0
# python-version: "3.12"
# extra-deps: 'dask[dataframe] "pytest == 8.0.0"' #
# Development version
- version: main
python-version: "3.12"
extra-deps: 'dask[dataframe]' #
fail-fast: false
runs-on: ${{ matrix.os }}
name: ${{ matrix.os }}-py${{ matrix.upstream.python-version }}-upstream-${{ matrix.upstream.version }}
steps:
- name: Cache test data
uses: actions/cache@v4
with:
path: message-local-data
key: ${{ matrix.os }}
- name: Check out message-ix-models
uses: actions/checkout@v4
with:
lfs: true
fetch-depth: ${{ env.depth }}
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.upstream.python-version }}
cache: pip
cache-dependency-path: "**/pyproject.toml"
- uses: iiasa/actions/setup-gams@main
with:
version: 25.1.1
license: ${{ secrets.GAMS_LICENSE }}
- uses: ts-graphviz/setup-graphviz@v2
with:
macos-skip-brew-update: true
- name: Install packages and dependencies
# By default, install:
# - ixmp, message_ix: from GitHub branches/tags per matrix.upstream-version (above)
# - other dependencies including genno: from PyPI.
#
# To test against unreleased code (on `main`, or other branches
# for open PRs), temporarily uncomment, add, or edit lines below
# as needed. DO NOT merge such changes to `main`.
run: |
# pip install --upgrade "genno @ git+https://github.com/khaeru/genno.git@main"
pip install --upgrade "ixmp @ git+https://github.com/iiasa/ixmp.git@${{ matrix.upstream.version }}"
pip install --upgrade "message-ix @ git+https://github.com/iiasa/message_ix.git@${{ matrix.upstream.version }}"
pip install .[docs,tests] ${{ matrix.upstream.extra-deps }}
- name: Configure local data path
run: |
mkdir -p message-local-data/cache
mix-models config set "message local data" "$(realpath message-local-data)"
mix-models config show
shell: bash
- name: Run test suite using pytest
run: |
pytest message_ix_models \
-m "not snapshot" \
-rA --verbose --color=yes --durations=20 \
--cov-report=term-missing --cov-report=xml \
--numprocesses=auto \
--local-cache --jvmargs="-Xmx6G"
shell: bash
- name: Upload test coverage to Codecov.io
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }} # required
snapshots:
strategy:
matrix:
os:
# - macos-latest
- ubuntu-latest
# - windows-latest
upstream:
# Same group structure as above
# Development version
- version: main
python-version: "3.12"
extra-deps: 'dask[dataframe]' #
fail-fast: false
runs-on: ${{ matrix.os }}
name: ${{ matrix.os }} snapshots
steps:
- name: Cache test data
uses: actions/cache@v4
with:
path: message-local-data
key: ${{ matrix.os }}
- name: Check out message-ix-models
uses: actions/checkout@v4
with:
lfs: true
fetch-depth: ${{ env.depth }}
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.upstream.python-version }}
cache: pip
cache-dependency-path: "**/pyproject.toml"
- uses: iiasa/actions/setup-gams@main
with:
version: 25.1.1
license: ${{ secrets.GAMS_LICENSE }}
- uses: ts-graphviz/setup-graphviz@v2
with:
macos-skip-brew-update: true
- name: Install packages and dependencies
# By default, install:
# - ixmp, message_ix: from GitHub branches/tags per matrix.upstream-version (above)
# - other dependencies including genno: from PyPI.
#
# To test against unreleased code (on `main`, or other branches
# for open PRs), temporarily uncomment, add, or edit lines below
# as needed. DO NOT merge such changes to `main`.
run: |
# pip install --upgrade "genno @ git+https://github.com/khaeru/genno.git@main"
pip install --upgrade "ixmp @ git+https://github.com/iiasa/ixmp.git@${{ matrix.upstream.version }}"
pip install --upgrade "message-ix @ git+https://github.com/iiasa/message_ix.git@${{ matrix.upstream.version }}"
pip install .[docs,tests] ${{ matrix.upstream.extra-deps }}
- name: Configure local data path
run: |
mkdir -p message-local-data/cache
mix-models config set "message local data" "$(realpath message-local-data)"
mix-models config show
shell: bash
- name: Run test suite using pytest
run: |
pytest message_ix_models \
-m "snapshot" \
-rA --verbose --color=yes --durations=20 \
--cov-report=term-missing --cov-report=xml \
--numprocesses=auto \
--local-cache --jvmargs="-Xmx6G"
shell: bash
- name: Upload test coverage to Codecov.io
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }} # required
pre-commit:
name: Code quality
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with: { python-version: "3.12" }
- name: Force recreation of pre-commit virtual environment for mypy
if: github.event_name == 'schedule' # Comment this line to run on a PR
run: gh cache list -L 999 | cut -f2 | grep pre-commit | xargs -I{} gh cache delete "{}" || true
env: { GH_TOKEN: "${{ github.token }}" }
- uses: pre-commit/[email protected]