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error in calculating models #89

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jingjiai opened this issue Oct 26, 2021 · 0 comments

jingjiai commented Oct 26, 2021

Hi,
I'm getting an error while running :

o.ifm <- scde.error.models(counts = cleandata, groups = clusters, n.cores = 1, threshold.segmentation = TRUE, save.crossfit.plots = FALSE, save.model.plots = FALSE, verbose = 1)

cross-fitting cells.
Error in tapply(colnames(counts), groups, function(ids) { :"
The parameters must be of the same length

but my cleandata and clusters seem to be right :

table(clusters)
clusters
Neuron Oligodendrocyte aNSC+TAC+NB OPC COP
1021 5365 4789 518 322
Astrocyte
10249
cleandata <- clean.counts(data_29319, min.lib.size=1000, min.reads = 1, min.detected = 1)

Thanks!

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