From 006753fadb9878ec1a3645df57155fa2ca860d91 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jo=C3=A3o=20Almeida?= Date: Thu, 28 Nov 2024 09:50:32 +0000 Subject: [PATCH] correct sushi --- input/fsh/examples/rawEPI/pt-scenario.fsh | 4 +- tests/output-lenses.csv | 653 ++++++++++++++++++++++ tests/tests.http | 3 + tests/tests.py | 56 +- 4 files changed, 708 insertions(+), 8 deletions(-) create mode 100644 tests/output-lenses.csv diff --git a/input/fsh/examples/rawEPI/pt-scenario.fsh b/input/fsh/examples/rawEPI/pt-scenario.fsh index f114e33c2..541e80b7a 100644 --- a/input/fsh/examples/rawEPI/pt-scenario.fsh +++ b/input/fsh/examples/rawEPI/pt-scenario.fsh @@ -343,11 +343,11 @@ Usage: #example * section.section[=].section[+].title = "Qual o aspeto de Glimepirida Generis e conteúdo da embalagem Comprimido." * section.section[=].section[=].code = $terms_1#200000029916 * section.section[=].section[=].text.status = #additional -* section.section[=].section[=].text.div = "
\n Comprimido.\n
Glimepirida Generis 1mg Comprimidos:
\n
Comprimidos não revestidos de cor rosa, planos,\n oblongos, com ranhura de ambos os lados, gravados com “X” e “76” de\n cada lado da ranhura numa das faces do comprimido e sem gravação na\n outra face.
O comprimido pode ser dividido em doses iguais.
\n
Glimepirida Generis 2mg\n Comprimidos:
Comprimidos não revestidos de cor branca a\n esbranquiçada, planos, oblongos, com ranhura de ambos os lados,\n gravados com “Y” e “32” de cada lado da ranhura numa das faces do\n comprimido e sem gravação na outra face.
O comprimido pode ser\n dividido em doses iguais.
\n
Glimepirida Generis 3mg\n Comprimidos:
Comprimidos não revestidos de cor amarelo-claro,\n planos, oblongos, com ranhura de ambos os lados, gravados com “Y” e\n “33” de cada lado da ranhura numa das faces do comprimido e sem\n gravação na outra face.
O comprimido pode ser dividido em doses\n iguais.
\n
Glimepirida Generis 4mg\n Comprimidos:
Comprimidos não revestidos de cor azul-claro a azul,\n planos, oblongos, com ranhura de ambos os lados, gravados com “Y” e\n “34” de cada lado da ranhura numa das faces do comprimido e sem\n gravação na outra face.
O comprimido pode ser dividido em doses\n iguais.
\n
Os comprimidos de Glimepirida Generis encontram-se\n disponíveis em embalagens blister.
\n
Dimensão das embalagens:
Glimepirida Generis 1\n mg: 20 e 60 comprimidos.
Glimepirida Generis 2 mg, 3 mg, 4 mg: 60\n comprimidos.
\n
É possível que não sejam comercializadas todas as\n apresentações.
\n
" +* section.section[=].section[=].text.div = "
\n
Glimepirida Generis 1mg Comprimidos:
\n
Comprimidos não revestidos de cor rosa, planos,\n oblongos, com ranhura de ambos os lados, gravados com \"X\" e \"76\" de\n cada lado da ranhura numa das faces do comprimido e sem gravação na\n outra face.
O comprimido pode ser dividido em doses iguais.
\n
Glimepirida Generis 2mg\n Comprimidos:
Comprimidos não revestidos de cor branca a\n esbranquiçada, planos, oblongos, com ranhura de ambos os lados,\n gravados com “Y” e “32” de cada lado da ranhura numa das faces do\n comprimido e sem gravação na outra face.
O comprimido pode ser\n dividido em doses iguais.
\n
Glimepirida Generis 3mg\n Comprimidos:
Comprimidos não revestidos de cor amarelo-claro,\n planos, oblongos, com ranhura de ambos os lados, gravados com \"Y\" e\n \"33\" de cada lado da ranhura numa das faces do comprimido e sem\n gravação na outra face.
O comprimido pode ser dividido em doses\n iguais.
\n
Glimepirida Generis 4mg\n Comprimidos:
Comprimidos não revestidos de cor azul-claro a azul,\n planos, oblongos, com ranhura de ambos os lados, gravados com \"Y\" e\n \"34\" de cada lado da ranhura numa das faces do comprimido e sem\n gravação na outra face.
O comprimido pode ser dividido em doses\n iguais.
\n
Os comprimidos de Glimepirida Generis encontram-se\n disponíveis em embalagens blister.
\n
Dimensão das embalagens:
Glimepirida Generis 1\n mg: 20 e 60 comprimidos.
Glimepirida Generis 2 mg, 3 mg, 4 mg: 60\n comprimidos.
\n
É possível que não sejam comercializadas todas as\n apresentações.
\n
" * section.section[=].section[+].title = "Titular da Autorização de Introdução no Mercado e Fabricante" * section.section[=].section[=].code = $terms_1#200000029917 * section.section[=].section[=].text.status = #additional -* section.section[=].section[=].text.div = "
\n
Generis Farmacêutica, S.A. Rua João de Deus, 19\n 2700-487 Amadora Portugal
\n Fabricante\n
APL Swift Services (Malta) Limited HF26, Hal Far\n Industrial Estate, Hal Far Birzebbugia, BBG\n 3000
Malta
ou
\n
Generis Farmacêutica, S.A. Rua João de Deus, 19\n 2700-487 Amadora Portugal
Este folheto foi revisto pela última vez\n em
\n
" +* section.section[=].section[=].text.div = "
\n
Generis Farmacêutica, S.A. Rua João de Deus, 19\n 2700-487 Amadora Portugal
\n Fabricante\n
APL Swift Services (Malta) Limited HF26, Hal Far\n Industrial Estate, Hal Far Birzebbugia, BBG\n 3000
Malta
ou
\n
Generis Farmacêutica, S.A. Rua João de Deus, 19\n 2700-487 Amadora Portugal
Este folheto foi revisto pela última vez\n em
\n
" * section.section[=].section[+].title = "Este folheto foi aprovado pela última vez em 14.11.2022" * section.section[=].section[=].code = $terms_1#200000029919 * section.section[=].section[=].text.status = #additional diff --git a/tests/output-lenses.csv b/tests/output-lenses.csv new file mode 100644 index 000000000..c86e103a2 --- /dev/null +++ b/tests/output-lenses.csv @@ -0,0 +1,653 @@ +epid,pid,lens,status_code,warnings,extension_proc_count,extension_applied_count,extension +bundlepackageleaflet-es-94a96e39cfdcd8b378d12dd4063065f9,alicia-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-94a96e39cfdcd8b378d12dd4063065f9,Cecilia-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-94a96e39cfdcd8b378d12dd4063065f9,Pedro-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-94a96e39cfdcd8b378d12dd4063065f9,helen-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-94a96e39cfdcd8b378d12dd4063065f9,maria-1,allergyintollerance-lens,200,{},0,1, 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+bundlepackageleaflet-en-04c9bd6fb89d38b2d83eced2460c4dc1,ips-3,conditions-lens,200,{},0,1, +bundlepackageleaflet-en-04c9bd6fb89d38b2d83eced2460c4dc1,ips-4,conditions-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,alicia-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Cecilia-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Pedro-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,helen-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,maria-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,0101010101,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-1,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-2,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-3,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-4,allergyintollerance-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,alicia-1,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Cecilia-1,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Pedro-1,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,helen-1,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,maria-1,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,0101010101,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-1,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-2,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-3,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-4,diabetes-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,alicia-1,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Cecilia-1,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Pedro-1,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,helen-1,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,maria-1,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,0101010101,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-1,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-2,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-3,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-4,interaction-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,alicia-1,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Cecilia-1,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Pedro-1,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,helen-1,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,maria-1,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,0101010101,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-1,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-2,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-3,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-4,pregnancy-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,alicia-1,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Cecilia-1,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Pedro-1,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,helen-1,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,maria-1,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,0101010101,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-1,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-2,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-3,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,ips-4,rmm-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,alicia-1,conditions-lens,200,{},0,1, +bundlepackageleaflet-es-49178f16170ee8a6bc2a4361c1748d5f,Cecilia-1,conditions-lens,200,{},0,1, diff --git a/tests/tests.http b/tests/tests.http index 53cabb8fe..44f006350 100644 --- a/tests/tests.http +++ b/tests/tests.http @@ -255,3 +255,6 @@ DELETE https://gravitate-health.lst.tfo.upm.es/epi/api/fhir/Bundle/bundlepackage POST https://gravitate-health.lst.tfo.upm.es/focusing/focus/bundlepackageleaflet-da-dcaa4d32aa6658a8df831551503e52ee?preprocessors=preprocessing-service-mvp2&lenses=lens-selector-mvp2_pregnancy&patientIdentifier=alicia-1 + +#### +POST https://gravitate-health.lst.tfo.upm.es/focusing/focus/bundlepackageleaflet-es-94a96e39cfdcd8b378d12dd4063065f9?preprocessors=preprocessing-service-manual&patientIdentifier=alicia-1&lenses=allergyintollerance-lens \ No newline at end of file diff --git a/tests/tests.py b/tests/tests.py index 722b5134e..7e0fa3e4a 100644 --- a/tests/tests.py +++ b/tests/tests.py @@ -159,12 +159,18 @@ def check_website_status(url, body=None): """ # print(body) - with open("data.json", "w") as json_file: - json.dump(body, json_file, indent=4) # indent=4 makes the output more readable + # with open("data.json", "w") as json_file: + # json.dump(body, json_file, indent=4) # indent=4 makes the output more readable try: if not body: - response = requests.post(url) + response = requests.post( + url, + headers={ + "content-type": "application/json", + "Accept": "application/json", + }, + ) else: # print(body) response = requests.post( @@ -178,7 +184,7 @@ def check_website_status(url, body=None): focusing_warnings = response.headers.get("gh-focusing-warnings") result = response.json() - + print(response.status_code) composition = result["entry"][0] ## print(composition) json_string = json.dumps(composition) @@ -227,9 +233,47 @@ def chek_preprocessor_data(BUNDLES, LENSES, PATIENT_IDS, BASE_URL): print(WEBSITE_URL) # WEBSITE_URL = WEBSITE_DATA["url"] # WEBSITE_DESC = WEBSITE_DATA["desc"] - status_code, warnings = check_website_status(WEBSITE_URL) - print(bundleid["id"], pid, lens, status_code, warnings) + status_code, warnings, countext, countapplied = check_website_status( + WEBSITE_URL + ) + print( + bundleid["id"], + pid, + lens, + status_code, + warnings, + countext, + countapplied, + ) + epid = bundleid["id"] + print(epid) + file.write( + epid + + "," + + str(pid) + + "," + + lens + + "," + + str(status_code) + + "," + + str(warnings) + + "," + + str(countext) + + "," + + str(countapplied) + + "," + + "\n", + ) + return 1 +file = open("output-lenses.csv", "w") +file.write( + "epid,pid,lens,status_code,warnings,extension_proc_count,extension_applied_count,extension\n" +) + chek_preprocessor_data(BUNDLES, LENSES, PATIENT_IDS, BASE_URL) +# test_preprocessor("bundlepackageleaflet-es-29436a85dac3ea374adb3fa64cfd2578", "es") +# bundlepackageleaflet-es-29436a85dac3ea374adb3fa64cfd2578 +file.close()