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<!DOCTYPE html>
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
<title>HiGlass Sequence</title>
<style type="text/css">
.canvasjs-chart-credit {
display: none;
}
</style>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css">
<link rel="stylesheet" href="hglib.css">
<script src="https://cdnjs.cloudflare.com/ajax/libs/pixi.js/5.2.3/pixi.min.js"></script>
<script crossorigin src="https://unpkg.com/react@16/umd/react.development.js"></script>
<script crossorigin src="https://unpkg.com/react-dom@16/umd/react-dom.development.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/react-bootstrap/0.32.1/react-bootstrap.min.js"></script>
</head>
<body>
Higlass sequence track
<div style=""></div>
<div style="margin: auto">
<div style="height: 1500px; width: 600px; border: 1px solid black;"
id="development-demo">
</div>
</div>
And some other text
<div style="height: 1500px"></div>
</body>
<script src="hglib.js"></script>
<script>
var viewConfig =
{
"editable": true,
"zoomFixed": false,
"trackSourceServers": [
"http://higlass.io/api/v1"
],
"exportViewUrl": "/api/v1/viewconfs/",
"views": [
{
"tracks": {
"top": [
{
"server": "http://higlass.io/api/v1",
"tilesetUid": "NyITQvZsS_mOFNlz5C2LJg",
"uid": "Lb1oLu6rSiaIFcdrouucQg",
"type": "horizontal-chromosome-labels",
"options": {
"color": "#808080",
"stroke": "#ffffff",
"fontSize": 12,
"fontIsLeftAligned": false,
"showMousePosition": false,
"mousePositionColor": "#000000"
},
"width": 20,
"height": 30
},
{
"type": "combined",
"uid": "FkGY-Yv9T8avNXljXklukw",
"height": 25,
"width": 568,
"contents": [
{
"uid": "fastaex",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#007FFF",
"#e8e500",
"#008000",
"#FF0038",
"#800080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"uid": "d6KeVfkNSmq_YNj_rWJgBA",
"type": "viewport-projection-horizontal",
"fromViewUid": "JaUMrYu4TkeP9RVS5QmpYg",
"options": {
"projectionFillColor": "#777",
"projectionStrokeColor": "#777",
"projectionFillOpacity": 0.3,
"projectionStrokeOpacity": 0.7,
"strokeWidth": 1
}
}
],
"options": {}
},
{
"uid": "fastaex1",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#22ca03",
"#c40003",
"#f6af08",
"#0000c7",
"#808080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"uid": "fastaex2",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#a6cee3",
"#1f78b4",
"#b2df8a",
"#33a02c",
"#808080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"uid": "fastaex3",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#2c7bb6",
"#abd9e9",
"#ffffbf",
"#fdae61",
"#808080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"uid": "fastaex4",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#08519c",
"#6baed6",
"#993404",
"#fe9929",
"#808080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"server": "http://higlass.io/api/v1",
"uid": "emptytrack",
"type": "empty",
"options": {
"color": "#808080",
"stroke": "#ffffff",
"fontSize": 14,
"fontIsLeftAligned": false,
"showMousePosition": false,
"mousePositionColor": "#000000"
},
"width": 568,
"height": 200
}
],
"left": [],
"center": [],
"right": [],
"bottom": [],
"whole": [],
"gallery": []
},
"initialXDomain": [
1080250.0490099243,
1081419.7532662181
],
"initialYDomain": [
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],
"layout": {
"w": 12,
"h": 10,
"x": 0,
"y": 0,
"moved": false,
"static": false
},
"uid": "AD_rIRKzRQKx3N8rbT9G4w"
},
{
"tracks": {
"top": [
{
"server": "http://higlass.io/api/v1",
"tilesetUid": "NyITQvZsS_mOFNlz5C2LJg",
"uid": "Lb1oLu6rSiaIFcdrouucQg",
"type": "horizontal-chromosome-labels",
"options": {
"color": "#808080",
"stroke": "#ffffff",
"fontSize": 12,
"fontIsLeftAligned": false,
"showMousePosition": false,
"mousePositionColor": "#000000"
},
"width": 20,
"height": 30
},
{
"uid": "fastaex",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#007FFF",
"#e8e500",
"#008000",
"#FF0038",
"#800080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"uid": "fastaex1",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#22ca03",
"#c40003",
"#f6af08",
"#0000c7",
"#808080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"uid": "fastaex2",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#a6cee3",
"#1f78b4",
"#b2df8a",
"#33a02c",
"#808080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"uid": "fastaex3",
"type": "horizontal-sequence",
"data": {
"type": "fasta",
"fastaUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa",
"faiUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.fa.fai",
"chromSizesUrl": "https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.mod.chrom.sizes"
},
"options": {
"colorAggregationMode": "none",
"labelPosition": "topLeft",
"labelColor": "black",
"labelTextOpacity": 0.4,
"valueScaling": "linear",
"trackBorderWidth": 0,
"trackBorderColor": "white",
"name": "hg38",
"backgroundColor": "white",
"barBorder": true,
"barBorderColor": "white",
"sortLargestOnTop": true,
"extendedPreloading": false,
"colorScale": [
"#08519c",
"#6baed6",
"#993404",
"#fe9929",
"#808080",
"#DCDCDC"
],
"notificationText": "Zoom in to see nucleotides...",
"fontSize": 16,
"fontFamily": "Arial",
"fontColor": "white",
"textOption": {
"fontSize": "32px",
"fontFamily": "Arial",
"fill": 16777215,
"fontWeight": "bold"
}
},
"width": 568,
"height": 25
},
{
"server": "http://higlass.io/api/v1",
"uid": "emptytrack",
"type": "empty",
"options": {
"color": "#808080",
"stroke": "#ffffff",
"fontSize": 14,
"fontIsLeftAligned": false,
"showMousePosition": false,
"mousePositionColor": "#000000"
},
"width": 568,
"height": 200
}
],
"left": [],
"center": [],
"right": [],
"bottom": [],
"whole": [],
"gallery": []
},
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1080874.4140677315,
1080894.7455448946
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"y": 10,
"moved": false,
"static": false
},
"uid": "JaUMrYu4TkeP9RVS5QmpYg"
}
],
"zoomLocks": {
"locksByViewUid": {},
"locksDict": {}
},
"locationLocks": {
"locksByViewUid": {},
"locksDict": {}
},
"valueScaleLocks": {
"locksByViewUid": {},
"locksDict": {}
}
}
// window.higlassApi;
window.hglib.viewer(
document.getElementById('development-demo'),
viewConfig,
{bounded: false}
);
</script>
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