DESCRIPTION

Package: rpg
Title: Multiple Sequence Alignment with PASTA and GUIDANCE
Version: 0.0.0.9000
Authors: c(
  person("Christoph", "Heibl", email = "christoph.heibl@npv-bw.bayern.de",
    role = c("cre", "aut")),
  person("Franz-Sebastian", "Krah", role = "aut"))
Author: Christoph Heibl [aut, cre], Franz-Sebastian Krah [aut]
Maintainer: Christoph Heibl <christoph.heibl@npv-bw.bayern.de>
Description: PASTA (Mirarab, Nguyen, and Warnow 2014) is a highly accurate and scalable algorithm for multiple sequence alignment. GUIDANCE  (Penn, Privman, Landan, Grauer, and Pupko 2010) is a well-performing method for the assessment of alignment uncertainty. Both methods are available as stand-alone programs, but, unfortunately, cannot be combined. This package provides a reimplementation of PASTA and GUIDANCE to combine their power to accurately align large numbers of sequences.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports:
 ape,
 doSNOW,
 foreach,
 ips,
 pbmcapply,
 Rcpp (>= 0.12.9)
LinkingTo: Rcpp
RoxygenNote: 6.0.1