From 7965a14800298bc030bcddd86209e35f11844932 Mon Sep 17 00:00:00 2001
From: Georgi Georgiev <georgiev.georgi.st@gmail.com>
Date: Wed, 9 Oct 2024 23:37:09 +0300
Subject: [PATCH] make spg2csv an entry point

---
 scripts/spg2csv.py                    | 41 -----------------------
 setup.py                              |  5 +++
 src/ramanchada2/standalone/spg2csv.py | 47 +++++++++++++++++++++++++++
 3 files changed, 52 insertions(+), 41 deletions(-)
 delete mode 100755 scripts/spg2csv.py
 create mode 100755 src/ramanchada2/standalone/spg2csv.py

diff --git a/scripts/spg2csv.py b/scripts/spg2csv.py
deleted file mode 100755
index 6e6799bd..00000000
--- a/scripts/spg2csv.py
+++ /dev/null
@@ -1,41 +0,0 @@
-#!/usr/bin/env python
-
-import argparse
-import csv
-import os
-
-try:
-    from tqdm import trange as range
-except ModuleNotFoundError:
-    pass
-
-from spectrochempy.core.readers.read_omnic import read_spg
-
-parser = argparse.ArgumentParser(description='Convert SPA/SPG file format.')
-parser.add_argument('-i', '--input', type=str, required=True, help='Path to SPA or SPG file')
-parser.add_argument('-o', '--output', type=str,
-                    help="Output file names in formated string like "
-                    "'/path/to/file-{y_label_name}.csv'. "
-                    "Possible options are: {y_label_date} {y_label_name} {y_coordinate} "
-                    "{input_basename} {input_extension}"
-                    "(default: '{input_basename}-{y_label_name}.csv')")
-args = parser.parse_args()
-out_file_format = args.output or f'{args.input}-{{y_label_name}}.csv'
-
-input_basename, input_extension = os.path.splitext(args.input)
-
-spe = read_spg(args.input)
-
-x = spe.coordset['x'].data
-for i in range(spe.coordset['y'].size):
-    (y_label_date, y_label_name), y_coordinate = spe.coordset['y'].labels[i], spe.coordset['y'].data[i]
-    y_label_name = str(y_label_name).replace('/', '_')
-    out_file_name = out_file_format.format(basename=input_basename,
-                                           y_label_date=y_label_date,
-                                           y_label_name=y_label_name,
-                                           y_coordinate=y_coordinate)
-    y = spe.data[i]
-    print(out_file_name)
-    with open(out_file_name, 'w') as fp:
-        csv_writer = csv.writer(fp)
-        csv_writer.writerows(zip(x, y))
diff --git a/setup.py b/setup.py
index 79b2ae8b..5f05d348 100644
--- a/setup.py
+++ b/setup.py
@@ -71,6 +71,10 @@
     'Topic :: Software Development :: Libraries',
 ]
 
+CONSOLE_SCRIPTS = [
+        'spg2csv = ramanchada2.standalone.spg2csv:spg2csv',
+]
+
 
 def setup_package():
     setup(
@@ -91,6 +95,7 @@ def setup_package():
         packages=PACKAGES,
         python_requires=PYTHON_REQUIRES,
         url=URL,
+        entry_points=dict(console_scripts=CONSOLE_SCRIPTS),
         version=VERSION,
     )
 
diff --git a/src/ramanchada2/standalone/spg2csv.py b/src/ramanchada2/standalone/spg2csv.py
new file mode 100755
index 00000000..d9aafa50
--- /dev/null
+++ b/src/ramanchada2/standalone/spg2csv.py
@@ -0,0 +1,47 @@
+#!/usr/bin/env python
+
+import argparse
+import csv
+import os
+
+try:
+    from tqdm import trange as range
+except ModuleNotFoundError:
+    pass
+
+from spectrochempy.core.readers.read_omnic import read_spg
+
+
+def spg2csv():
+    parser = argparse.ArgumentParser(description='Convert SPA/SPG file format.')
+    parser.add_argument('-i', '--input', type=str, required=True, help='Path to SPA or SPG file')
+    parser.add_argument('-o', '--output', type=str,
+                        help="Output file names in formated string like "
+                        "'/path/to/file-{y_label_name}.csv'. "
+                        "Possible options are: {y_label_date} {y_label_name} {y_coordinate} "
+                        "{input_basename} {input_extension}"
+                        "(default: '{input_basename}-{y_label_name}.csv')")
+    args = parser.parse_args()
+    out_file_format = args.output or f'{args.input}-{{y_label_name}}.csv'
+
+    input_basename, input_extension = os.path.splitext(args.input)
+
+    spe = read_spg(args.input)
+
+    x = spe.coordset['x'].data
+    for i in range(spe.coordset['y'].size):
+        (y_label_date, y_label_name), y_coordinate = spe.coordset['y'].labels[i], spe.coordset['y'].data[i]
+        y_label_name = str(y_label_name).replace('/', '_')
+        out_file_name = out_file_format.format(basename=input_basename,
+                                               y_label_date=y_label_date,
+                                               y_label_name=y_label_name,
+                                               y_coordinate=y_coordinate)
+        y = spe.data[i]
+        print(out_file_name)
+        with open(out_file_name, 'w') as fp:
+            csv_writer = csv.writer(fp)
+            csv_writer.writerows(zip(x, y))
+
+
+if __name__ == '__main__':
+    spg2csv()