diff --git a/CHANGELOG.md b/CHANGELOG.md index 22c8e6e1..fa8f7835 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,32 @@ # Changelog +## [6.0.0](https://github.com/gymrek-lab/TRTools/compare/v5.1.1...v6.0.0) (2024-02-19) + + +### ⚠ BREAKING CHANGES + +* remove pybedtools as a dependency. This slightly changes the interpretation of BED files. From now on, the end position of each region will not be included. ([#184](https://github.com/gymrek-lab/TRTools/issues/184)) + +### Features + +* add version constraints, poetry, and `poetry.lock` file, and use `nox-poetry` and py3.12 in CI ([#202](https://github.com/gymrek-lab/TRTools/issues/202)) ([ed9c961](https://github.com/gymrek-lab/TRTools/commit/ed9c9610d0a6d0503efb07ad38a995a1957826ba)) + + +### Bug Fixes + +* deprecation of binom_test in scipy 1.12.0 and cryptic error occurring with incorrect VCFs in cyvcf2 0.30.26 ([#208](https://github.com/gymrek-lab/TRTools/issues/208)) ([78ec86a](https://github.com/gymrek-lab/TRTools/commit/78ec86a92dd7bdd8fffc1a88e416681af1b54234)) + + +### Documentation + +* reviewer and maintainer responsibilities with automated releases and PRs ([7762d87](https://github.com/gymrek-lab/TRTools/commit/7762d8796144597c4bdb5f68f51436bf14420ef2)) +* specify conda install via biocontainers ([2807421](https://github.com/gymrek-lab/TRTools/commit/2807421568ad0a477a42346017820de808d2e5dd)) + + +### Code Refactoring + +* remove pybedtools as a dependency. This slightly changes the interpretation of BED files. From now on, the end position of each region will not be included. ([#184](https://github.com/gymrek-lab/TRTools/issues/184)) ([89c1dd3](https://github.com/gymrek-lab/TRTools/commit/89c1dd315a1cb96edb2d3479f7eb36990044a01c)) + ## [5.1.1](https://github.com/gymrek-lab/TRTools/compare/v5.1.0...v5.1.1) (2023-11-27) ### Bug fixes diff --git a/pyproject.toml b/pyproject.toml index d9efee35..fbe138e2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "trtools" -version = "5.1.1" +version = "6.0.0" authors = [ "Melissa Gymrek ", "Gymrek Lab",