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Slurm Docker Cluster

This is a multi-container Slurm cluster using docker-compose. The compose file creates named volumes for persistent storage of MySQL data files as well as Slurm state and log directories.

Overview: Containers and Volumes

The compose file will run the following containers:

  • mysql
  • slurmdbd
  • slurmctld
  • node001 (slurmd)
  • node002 (slurmd)
  • nodebf2a001 (slurmd)
  • nodebf2a002 (slurmd)

The compose file will create the following named volumes:

  • etc_munge ( -> /etc/munge )
  • etc_slurm ( -> /etc/slurm )
  • slurm_jobdir ( -> /data )
  • var_lib_mysql ( -> /var/lib/mysql )
  • var_log_slurm ( -> /var/log/slurm )

Building the cluster

Building the Docker Image

Build the image locally:

sudo docker build -t slurm-docker-cluster:21.08.6 .

Starting the Cluster

Run docker-compose to instantiate the cluster:

sudo IMAGE_TAG=21.08.6 docker-compose up -d --force-recreate

Register the Cluster with SlurmDBD

Note: You may have to wait a few seconds for the cluster daemons to become ready before registering the cluster. Otherwise, you may get an error such as sacctmgr: error: Problem talking to the database: Connection refused.

You can check the status of the cluster by viewing the logs: docker-compose logs -f

To register the cluster to the slurmdbd daemon, run the register_cluster.sh script:

sudo docker exec slurmctld bash -c "/usr/bin/sacctmgr --immediate add cluster name=linux"
sudo docker-compose restart slurmdbd slurmctld

Accessing the Cluster

Use docker exec to run a bash shell on the controller container:

sudo docker exec -it slurmctld bash

From the shell, execute slurm commands, for example:

[root@slurmctld /]# sinfo
PARTITION AVAIL  TIMELIMIT  NODES  STATE NODELIST
normal*      up 5-00:00:00      2   idle c[1-2]

Submitting Jobs

The slurm_jobdir named volume is mounted on each Slurm container as /data. Therefore, in order to see job output files while on the controller, change to the /data directory when on the slurmctld container and then submit a job:

[root@slurmctld /]# cd /data/
[root@slurmctld data]# sbatch --wrap="hostname"
Submitted batch job 2
[root@slurmctld data]# ls
slurm-2.out
[root@slurmctld data]# cat slurm-2.out
c1

Stopping and Restarting the Cluster

sudo docker-compose stop
sudo docker-compose start

Deleting the Cluster

To remove all containers and volumes, run:

sudo docker-compose stop
sudo docker-compose rm -f
sudo docker volume rm slurm-docker-cluster_etc_munge slurm-docker-cluster_etc_slurm slurm-docker-cluster_slurm_jobdir slurm-docker-cluster_var_lib_mysql slurm-docker-cluster_var_log_slurm

Updating the Cluster

If you want to change the slurm.conf or slurmdbd.conf file without a rebuilding you can do so by calling

./update_slurmfiles.sh slurm.conf slurmdbd.conf

(or just one of the files). The Cluster will automatically be restarted afterwards with

docker-compose restart

This might come in handy if you add or remove a node to your cluster or want to test a new setting.