mkdocs.yml

site_name: PrismToolBox
repo_name: gustaveroussy/PrismToolBox
repo_url: https://github.com/gustaveroussy/PrismToolBox
copyright: Copyright © 2023 - 2024 Loïc Le Bescond
theme:
  name: material
  palette:
    primary: blue grey
  features:
    - navigation.tabs
nav:
- Home: index.md
# defer to gen-files + literate-nav
- API:
    - prismtoolbox.wsicore:
      - prismtoolbox.wsicore.wsi: reference/prismtoolbox/wsicore/wsi.md
      - prismtoolbox.wsicore.core_utils: reference/prismtoolbox/wsicore/core_utils.md
    - prismtoolbox.wsiemb:
        - prismtoolbox.wsiemb.embedder: reference/prismtoolbox/wsiemb/embedder.md
        - prismtoolbox.wsiemb.processing: reference/prismtoolbox/wsiemb/processing.md
        - prismtoolbox.wsiemb.emb_utils: reference/prismtoolbox/wsiemb/emb_utils.md
    - prismtoolbox.nucleiseg: reference/prismtoolbox/nucleiseg/segmenter.md
# rest of the navigation...
plugins:
  - search
  - autorefs
  - gen-files:
      scripts:
        - scripts/mkdocs/gen_ref_pages.py
  - mkdocstrings:
      default_handler: python
      handlers:
        python:
          paths: [src]
          rendering:
            renderer: markdown
          options:
            docstring_style: google
            docstring_section_style: table
            merge_init_into_class: true
            show_symbol_type_heading: true
            show_symbol_type_toc: true
            show_root_toc_entry: false
  - literate-nav:
      nav_file: SUMMARY.md
  - section-index

  #- mkdocs-jupyter:
  #    include_source: True

markdown_extensions:
  - admonition
  - attr_list
  - md_in_html
  - pymdownx.details
  - pymdownx.highlight:
      anchor_linenums: true
  - pymdownx.inlinehilite
  - pymdownx.snippets
  - pymdownx.superfences
  - pymdownx.arithmatex:
      generic: true
  - pymdownx.tabbed:
      alternate_style: true
extra_javascript:
  - javascripts/mathjax.js
  - https://polyfill.io/v3/polyfill.min.js?features=es6
  - https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js