diff --git a/assets/generate.sh b/assets/generate.sh
index ee6c5276..45850f2e 100755
--- a/assets/generate.sh
+++ b/assets/generate.sh
@@ -1,9 +1,12 @@
 echo -e ".. This file is auto-generated by Makefile\n\tDO NOT EDIT\n\n" > index.rst
+echo -e "# This file is auto-generated by generator.sh\n# DO NOT EDIT MANUALLY" > .gitignore
+echo "index.rst" >> .gitignore
 for i in `find notes/ -mindepth 1 -maxdepth 1 -type d|sort`; do 
         echo "Scanning directory $i" 
+        echo "$i.md" >> .gitignore # This will exclude auto-generated files from git
         echo -e "<!--This file is auto-generated by Makefile\n----DO NOT EDIT -->" > $i.md 
         # To set name in toctree use :caption:
-        echo -e ".. toctree::\n\t:maxdepth: 3\n\n\tassets/$i.md\n" >> index.rst 
+        echo -e ".. toctree::\n\t:maxdepth: 2\n\n\tassets/$i.md\n" >> index.rst 
         for j in `find $i -type f -name \\*md|sort`; do 
                 echo "$j"
                 echo -e "---\n_Notatki z pliku \`$j\`_" >> $i.md