Profnode.h

/* RNAStructProfiling -- Profiles RNA structures and produces a summary graph in graphviz format.
 * Copyright 2013, 2014, 2018 Emily Rogers
 *
 * This file is part of RNAStructProfiling.
 *
 * RNAStructProfiling is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * RNAStructProfiling is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with RNAStructProfiling.  If not, see <https://www.gnu.org/licenses/>.
 */

#ifndef PROFNODE
#define PROFNODE

#include "Profile.h"

typedef struct profnode{
  //array of hc that make the prof
  int *prof;
  //number of hc in prof
  int profnum;
  //array of extended prof that make the prof
  int *extended;
  //length of extended
  int extnum;
  //sum of freq of extended profiles
  int coverage;
  struct profnode *withNext;
  struct profnode *woNext;
  struct profnode *parent;
} Profnode;

struct profnode* makeProfnode(int *prof);

#endif