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Should anchor position be a criteria in the aggregate reprot for class II predictions? #940

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susannasiebert opened this issue Mar 29, 2023 · 1 comment
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Should anchor position be a criteria in the aggregate reprot for class II predictions? #940

susannasiebert opened this issue Mar 29, 2023 · 1 comment
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@susannasiebert
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The default [1, 2, n-1, n] positions might not be appropriate for class II and no allele-specific anchor positions are available for class II alleles. Are the default positions also applicable to long class I peptides (12mers and above)?
@malachig
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More broadly we could propose an exercise like that done in the anchor paper but for classII.

@malachig malachig added the grant label Apr 19, 2023
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@malachig @susannasiebert