diff --git a/docs/releases.rst b/docs/releases.rst index bb443c13..fb33f8e4 100644 --- a/docs/releases.rst +++ b/docs/releases.rst @@ -17,3 +17,4 @@ Release Notes releases/3_1 releases/4_0 releases/4_1 + releases/4_2 diff --git a/docs/releases/4_2.rst b/docs/releases/4_2.rst new file mode 100644 index 00000000..de193ebd --- /dev/null +++ b/docs/releases/4_2.rst @@ -0,0 +1,19 @@ +Version 4.2 +=========== + +Version 4.2.0 +------------- + +This is a minor feature release. It adds the following features: + +- We added two new modules to pVACview: a :ref:`neofox_module` to visualize + NeoFox neoantigen annotations and a :ref:`custom_module` to visualize + neoantigen data in a TSV file, for example output files from VaxRank, + NeoPredPipe, or antigen.garnish.2. +- We added a :ref:`vignette ` to our documentation to provide + an extended tutorial on how evaluate neoantigen candidates using pVACview. + +This release also fixes the following bug(s): + +- When running pVACfuse with Arriba input data, the 3' transcript was not + being parsed correctly. This release fixes this issue. diff --git a/pvactools/tools/pvacview/Dockerfile b/pvactools/tools/pvacview/Dockerfile index bb05b8fc..7ec96c13 100644 --- a/pvactools/tools/pvacview/Dockerfile +++ b/pvactools/tools/pvacview/Dockerfile @@ -18,7 +18,9 @@ RUN R -e "install.packages(c('shiny',\ 'shinydashboardPlus', \ 'shinycssloaders', \ 'fresh', \ - 'RCurl' ), repos='https://cran.rstudio.com/')" + 'RCurl', \ + 'shinyWidgets', \ + 'colourpicker'), repos='https://cran.rstudio.com/')" RUN R -e "devtools::install_github('eclarke/ggbeeswarm', ref='v0.6.1')"