diff --git a/docs/conf.py b/docs/conf.py index b2a3afdd..ca6e863f 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -70,7 +70,7 @@ # The short X.Y version. version = '4.0' # The full version, including alpha/beta/rc tags. -release = '4.0.4' +release = '4.0.5' # The language for content autogenerated by Sphinx. Refer to documentation diff --git a/docs/index.rst b/docs/index.rst index 1543b092..dba79771 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -56,8 +56,15 @@ New in Release |release| This is a bugfix release. It fixes the following problem(s): -- This release makes various fixes to allow pVACtools to run with non-human - data. +- In recent releases, users have noticed that at some point during pipeline + runs, predictions to MHCflurry would hang or get killed. We were able to + determine that the cause was related to + `PR 988 `_. + This PR originally updated calls to MHCflurry to happen by instantiating + their predictor within Python instead of calling it on the command line. + However, we suspect that this causes a substantial increase in memory usage + resulting in the observed behavior. This release reverts the change from PR + 988. New in Version |version| ------------------------ diff --git a/docs/releases/4_0.rst b/docs/releases/4_0.rst index a9a16ffc..545058cd 100644 --- a/docs/releases/4_0.rst +++ b/docs/releases/4_0.rst @@ -114,3 +114,18 @@ This is a bugfix release. It fixes the following problem(s): - This release makes various fixes to allow pVACtools to run with non-human data. + +New in Version 4.0.5 +-------------------- + +This is a bugfix release. It fixes the following problem(s): + +- In recent releases, users have noticed that at some point during pipeline + runs, predictions to MHCflurry would hang or get killed. We were able to + determine that the cause was related to + `PR 988 `_. + This PR originally updated calls to MHCflurry to happen by instantiating + their predictor within Python instead of calling it on the command line. + However, we suspect that this causes a substantial increase in memory usage + resulting in the observed behavior. This release reverts the change from PR + 988. diff --git a/setup.py b/setup.py index 3a116953..92f1af85 100644 --- a/setup.py +++ b/setup.py @@ -51,7 +51,7 @@ setup( name="pvactools", - version="4.0.4", + version="4.0.5", packages=[ "pvactools.tools", "pvactools.tools.pvacbind",