diff --git a/docs/conf.py b/docs/conf.py index 0d3ebe672..3af0cc002 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -69,7 +69,7 @@ # The short X.Y version. version = '1.5' # The full version, including alpha/beta/rc tags. -release = '1.5.7' +release = '1.5.8' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/docs/index.rst b/docs/index.rst index 7b9158806..9d1629749 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -52,10 +52,16 @@ New in release |release| This is a hotfix release. It fixes the following issues: -- The ``pvacbind run`` command would previously allow fasta input files with - duplicated headers. However, it would silently skip subsequent entries with - duplicated headers even if the fasta sequence was novel. With this release - pVACbind will now error out if a duplicate fasta header is encounterd. +- The ``pvacseq run``, ``pvacfuse run``, and ``pvacbind run`` commands would + previously error out when running with both MHC class I and MHC class II + algorithms but one or the other would not produce an all_eptiopes.tsv file. + This version fixes this bug. +- MHCflurry version 1.6.0 and higher changed the output file headers. This + would cause errors when trying to parse these output files. pVACtools now + supports both the old and the new headers. +- AGFusion updated their output file naming convention in newer versions and + is now outputting .exons.csv files instead of .exons.txt files. + pVACfuse is now able to process either version. New in version |version| ------------------------ diff --git a/docs/releases/1_5.rst b/docs/releases/1_5.rst index d3a7bf2d5..9a4f3f76d 100644 --- a/docs/releases/1_5.rst +++ b/docs/releases/1_5.rst @@ -174,3 +174,19 @@ This is a hotfix release. It fixes the following issues: duplicated headers. However, it would silently skip subsequent entries with duplicated headers even if the fasta sequence was novel. With this release pVACbind will now error out if a duplicate fasta header is encounterd. + +1.5.8 +----- + +This is a hotfix release. It fixes the following issues: + +- The ``pvacseq run``, ``pvacfuse run``, and ``pvacbind run`` commands would + previously error out when running with both MHC class I and MHC class II + algorithms but one or the other would not produce an all_eptiopes.tsv file. + This version fixes this bug. +- MHCflurry version 1.6.0 and higher changed the output file headers. This + would cause errors when trying to parse these output files. pVACtools now + supports both the old and the new headers. +- AGFusion updated their output file naming convention in newer versions and + is now outputting .exons.csv files instead of .exons.txt files. + pVACfuse is now able to process either version. diff --git a/setup.py b/setup.py index 0271ced92..0dd95c800 100644 --- a/setup.py +++ b/setup.py @@ -61,7 +61,7 @@ setup( name="pvactools", - version="1.5.7", + version="1.5.8", packages=[ "tools", "tools.pvacbind",