From 6cebe513edbac3e258a6b6a7533b84390dfbfb64 Mon Sep 17 00:00:00 2001 From: Oriol Colomes Date: Thu, 9 Dec 2021 22:56:31 +0100 Subject: [PATCH] removing tmp file --- tmp.jl | 305 --------------------------------------------------------- 1 file changed, 305 deletions(-) delete mode 100644 tmp.jl diff --git a/tmp.jl b/tmp.jl deleted file mode 100644 index 988da7d..0000000 --- a/tmp.jl +++ /dev/null @@ -1,305 +0,0 @@ -using Gridap -using Gridap.Arrays -using Gridap.Geometry -using GridapODEs.TransientFETools -using GridapODEs.ODETools -using Test -using LineSearches: BackTracking -using ForwardDiff -import GridapODEs.TransientFETools: ∂t - -# Problem setting -println("Setting analytical fluid problem parameters") -# Solid properties -E_s = 1.0 -ν_s = 0.4 -ρ_s = 1.0 -# Fluid properties -ρ_f = 1.0 -μ_f = 1.0 -γ_f = 1.0 -# Mesh properties -n_m = 3 -E_m = 1.0 -ν_m = 0.1 -α_m = 1.0e-5 -# Time stepping -t0 = 0.0 -tf = 0.5 -dt = 0.1 -θ = 0.5 - -# Define BC functions -println("Defining Boundary conditions") -#u(x, t) = 1.0e-2 * VectorValue( x[1]^2*x[2] , -x[1]*x[2]^2) * t -#v(x, t) = 1.0e-2 * VectorValue( x[1]^2*x[2] , -x[1]*x[2]^2) -u(x, t) = 1.0e-2 * VectorValue( 1.0 , -1.0) * t -v(x, t) = 1.0e-2 * VectorValue( 1.0 , -1.0) -u(t::Real) = x -> u(x,t) -v(t::Real) = x -> v(x,t) -∂tu(t) = x -> VectorValue(ForwardDiff.derivative(t -> get_array(u(x,t)),t)) -∂tv(t) = x -> VectorValue(ForwardDiff.derivative(t -> get_array(v(x,t)),t)) -∂tu(x,t) = ∂tu(t)(x) -∂tv(x,t) = ∂tv(t)(x) -T_u = typeof(u) -T_v = typeof(v) -@eval ∂t(::$T_u) = $∂tu -@eval ∂t(::$T_v) = $∂tv -p(x,t) = 0.0 -p(t::Real) = x -> p(x,t) -bconds = ( - # Tags - FSI_Vu_tags = ["boundary"], - FSI_Vv_tags = ["boundary"], - ST_Vu_tags = ["boundary","interface"], - ST_Vv_tags = ["boundary","interface"], - # Values, - FSI_Vu_values = [u], - FSI_Vv_values = [v], - ST_Vu_values = [u(0.0),u(0.0)], - ST_Vv_values = [v(0.0),v(0.0)], -) - -function lame_parameters(E,ν) - λ = (E*ν)/((1+ν)*(1-2*ν)) - μ = E/(2*(1+ν)) - (λ, μ) -end - -# Define Forcing terms -I = TensorValue( 1.0, 0.0, 0.0, 1.0 ) -F(t) = x -> ∇(u(t))(x) + I -J(t) = x -> det(F(t))(x) -E(t) = x -> 0.5 * ((F(t)(x)')⋅F(t)(x) - I) -(λ_s, μ_s) = lame_parameters(E_s,ν_s) -(λ_m, μ_m) = lame_parameters(E_m,ν_m) -S_SV(t) = x -> 2*μ_s*E(t)(x) + λ_s*tr(E(t)(x))*I -fv_ST_Ωf(t) = x -> - μ_f*Δ(v(t))(x) + ∇(p(t))(x) -fu_Ωf(t) = x -> - α_m * Δ(u(t))(x) -fv_Ωf(t) = x -> ρ_f * ∂t(v)(t)(x) - μ_f * Δ(v(t))(x) + ∇(p(t))(x) + ρ_f*( (∇(v(t))(x)')⋅(v(t)(x) - ∂t(u)(t)(x)) ) -fp_Ωf(t) = x -> (∇⋅v(t))(x) -fu_Ωs(t) = x -> ∂t(u)(t)(x) - v(t)(x) -fv_Ωs(t) = x -> ρ_s * ∂t(v)(t)(x) #- (∇⋅(F(t)⋅S_SV(t)))(x) # Divergence of a a doted function not working yet... - -# Discrete model -println("Defining discrete model") -domain = (-1,1,-1,1) -partition = (n_m,n_m) -model = CartesianDiscreteModel(domain,partition) -trian = Triangulation(model) -R = 0.5 -xc = 0.0 -yc = 0.0 -function is_in(coords) - n = length(coords) - x = (1/n)*sum(coords) - d = (x[1]-xc)^2 + (x[2]-yc)^2 - R^2 - d < 1.0e-8 -end -oldcell_to_coods = get_cell_coordinates(trian) -oldcell_to_is_in = collect1d(lazy_map(is_in,oldcell_to_coods)) -incell_to_cell = findall(oldcell_to_is_in) -outcell_to_cell = findall(collect(Bool, .! oldcell_to_is_in)) -model_solid = DiscreteModel(model,incell_to_cell) -model_fluid = DiscreteModel(model,outcell_to_cell) - -# Build fluid-solid interface labelling -println("Defining Fluid-Solid interface") -labeling = get_face_labeling(model_fluid) -new_entity = num_entities(labeling) + 1 -topo = get_grid_topology(model_fluid) -D = num_cell_dims(model_fluid) -for d in 0:D-1 - fluid_boundary_mask = collect(Bool,get_isboundary_face(topo,d)) - fluid_outer_boundary_mask = get_face_mask(labeling,"boundary",d) - fluid_interface_mask = collect(Bool,fluid_boundary_mask .!= fluid_outer_boundary_mask) - dface_list = findall(fluid_interface_mask) - for face in dface_list - labeling.d_to_dface_to_entity[d+1][face] = new_entity - end -end -add_tag!(labeling,"interface",[new_entity]) - -# Triangulations -println("Defining triangulations") -Ω = Triangulation(model) -Ω_s = Triangulation(model_solid) -Ω_f = Triangulation(model_fluid) -Γ_i = BoundaryTriangulation(model_fluid,tags="interface") - -# Quadratures -println("Defining quadratures") -order = 2 -degree = 2*order -bdegree = 2*order -dΩ = Measure(Ω,degree) -dΩs = Measure(Ω_s,degree) -dΩf = Measure(Ω_f,degree) -dΓi = Measure(Γ_i,bdegree) - -# Test FE Spaces -println("Defining FE spaces") -# Reference FE -reffeᵤ = ReferenceFE(lagrangian,VectorValue{2,Float64},order) -reffeₚ = ReferenceFE(lagrangian,Float64,order-1) -# Test FE Spaces -Vu_FSI = TestFESpace(model, reffeᵤ, conformity=:H1, dirichlet_tags=bconds[:FSI_Vu_tags]) -Vv_FSI = TestFESpace(model, reffeᵤ, conformity=:H1, dirichlet_tags=bconds[:FSI_Vv_tags]) -Vu_ST = TestFESpace(model_fluid, reffeᵤ, conformity=:H1, dirichlet_tags=bconds[:ST_Vu_tags]) -Vv_ST = TestFESpace(model_fluid, reffeᵤ, conformity=:H1, dirichlet_tags=bconds[:ST_Vv_tags]) -Q = TestFESpace(model_fluid, reffeₚ, conformity=:C0, constraint=:zeromean) - -# Trial FE Spaces -Uu_ST = TrialFESpace(Vu_ST,bconds[:ST_Vu_values]) -Uv_ST = TrialFESpace(Vv_ST,bconds[:ST_Vv_values]) -Uu_FSI = TransientTrialFESpace(Vu_FSI,bconds[:FSI_Vu_values]) -Uv_FSI = TransientTrialFESpace(Vv_FSI,bconds[:FSI_Vv_values]) -P = TrialFESpace(Q) - -# Multifield FE Spaces -Y_ST = MultiFieldFESpace([Vu_ST,Vv_ST,Q]) -X_ST = MultiFieldFESpace([Uu_ST,Uv_ST,P]) -Y_FSI = MultiFieldFESpace([Vu_FSI,Vv_FSI,Q]) -X_FSI = TransientMultiFieldFESpace([Uu_FSI,Uv_FSI,P]) - -# Stokes problem for initial solution -println("Defining Stokes operator") -a((u,v,p),(ϕ,φ,q)) = ∫( ϕ⋅u + ε(φ) ⊙ (2.0*μ_f*ε(v)) - (∇⋅φ) * p + q * (∇⋅v) )dΩf -l((ϕ,φ,q)) = ∫( φ⋅fv_ST_Ωf(0.0) )dΩf -res(x,y) = a(x,y) - l(y) -jac(x,dx,y) = a(dx,y) -op_ST = FEOperator(res,jac,X_ST,Y_ST) - -# Map operations -F(∇u) = ∇u + I -J(∇u) = det(F(∇u)) -Finv(∇u) = inv(F(∇u)) -FinvT(∇u) = (Finv(∇u)') -E(∇u) = 0.5 * ((F(∇u)')⋅F(∇u) - I) - -# Map operations derivatives -dF(∇du) = ∇du -dJ(∇u,∇du) = J(∇u)*tr(Finv(∇u)⋅dF(∇du)) -dFinv(∇u,∇du) = -Finv(∇u) ⋅ dF(∇du) ⋅ Finv(∇u) -dFinvT(∇u,∇du) = (dFinv(∇u,∇du)') -dE(∇u,∇du) = 0.5 * ((dF(∇du)')⋅F(∇u) + (F(∇u)')⋅dF(∇du)) - -# Fluid constitutive laws -# Cauchy stress -σᵥ_Ωf(μ,u) = 2.0*μ*ε(u) -σᵥ_Ωf(μ) = (∇v,Finv) -> μ*(∇v⋅Finv + (Finv')⋅(∇v')) -# First Piola-Kirchhoff stress -Pᵥ_Ωf(μ,u,v) = (J∘∇(u)) * (σᵥ_Ωf(μ)∘(∇(v),Finv∘∇(u)))' ⋅ (FinvT∘∇(u)) -function Pₚ_Ωf(u,p) - typeof(- (J∘∇(u)) * p * tr((FinvT∘∇(u)))) - - (J∘∇(u)) * p * tr((FinvT∘∇(u))) -end -# First Piola-Kirchhoff stress Jacobian -dPᵥ_Ωf_du(μ,u,du,v) = (dJ∘(∇(u),∇(du))) * (σᵥ_Ωf(μ)∘(∇(v),(Finv∘∇(u))))' ⋅ (FinvT∘∇(u)) + - (J∘∇(u)) * (σᵥ_Ωf(μ)∘(∇(v),(dFinv∘(∇(u),∇(du)))))' ⋅ (FinvT∘∇(u)) + - (J∘∇(u)) * (σᵥ_Ωf(μ)∘(∇(v),(Finv∘∇(u))))' ⋅ (dFinvT∘(∇(u),∇(du))) -dPₚ_Ωf_du(u,du,p) = - p * ( (dJ∘(∇(u),∇(du))) * tr((FinvT∘∇(u))) + - (J∘∇(u)) * tr((dFinvT∘(∇(u),∇(du)))) ) -dPᵥ_Ωf_dv(μ,u,dv) = Pᵥ_Ωf(μ,u,dv) -dPₚ_Ωf_dp(u,dp) = Pₚ_Ωf(u,dp) -# Convective term -conv(c,∇v) = (∇v') ⋅ c -dconv(dc,∇dv,c,∇v) = conv(c,∇dv) + conv(dc,∇v) - -# Solid constitutive laws -# Second Piola-Kirchhoff stress (Saint-Venant) -Sₛᵥ_Ωs(λ,μ,u) = 2*μ*(E∘∇(u)) + λ*tr((E∘∇(u)))*(I∘∇(u)) -dSₛᵥ_Ωs_du(λ,μ,u,du) = 2*μ*(dE∘(∇(u),∇(du))) + λ*tr((dE∘(∇(u),∇(du))))*(I∘∇(u)) -# First Piola-Kirchhoff stress (Saint-Venant) -Pₛᵥ_Ωs(λ,μ,u) = (F∘∇(u)) ⋅ Sₛᵥ_Ωs(λ,μ,u) -dPₛᵥ_Ωs_du(λ,μ,u,du) = (dF∘∇(du)) ⋅ Sₛᵥ_Ωs(λ,μ,u) + (F∘∇(u)) ⋅ dSₛᵥ_Ωs_du(λ,μ,u,du) - -# # FSI problem -println("Defining FSI operator") -n_Γi = get_normal_vector(Γ_i) -a_f((u,v,p),(ϕ,φ,q)) = ∫( φ ⋅ ( (J∘∇(u)) * ρ_f * ∂t(v) ) )dΩ -da_f((u,v,p),(du,dv,dp),(ϕ,φ,q)) = ∫( φ ⋅ ( (dJ∘(∇(u),∇(du))) * ρ_f * ∂t(v) ) )dΩ -da_t_f((u,v,p),(dut,dvt,dpt),(ϕ,φ,q)) = ∫( φ ⋅ ( (J∘∇(u)) * ρ_f * dvt ) )dΩ -# da_t_f((u,v,p),(dut,dvt,dpt),(ϕ,φ,q)) = ∫( φ ⋅ ( ρ_f * dvt) )dΩf -a_fsi((u,v,p),(ϕ,φ,q)) = ∫( ϕ⋅u + φ⋅v + q*p )dΩ -l_f(t,(ϕ,φ,q)) = ∫( ϕ⋅fu_Ωf(t) )dΩ -l_fsi(t,(ϕ,φ,q)) = ∫( φ⋅fv_Ωf(t) )dΩ -res(t,x,y) = a_f(x,y) + a_fsi(x,y) + a_fsi(∂t(x),y) - l_f(t,y) - l_fsi(t,y) -jac(t,x,dx,y) = da_f(x,dx,y) + a_fsi(dx,y) -jac_t(t,x,dxt,y) = da_t_f(x,dxt,y) + a_fsi(dxt,y) -op_FSI = TransientFEOperator(res,jac,jac_t,X_FSI,Y_FSI) -#op_FSI = TransientFEOperator(res,X_FSI,Y_FSI) -# a_f((u,v,p),(ut,vt,pt),(ϕ,φ,q)) = -# ∫( α_m * (∇(ϕ) ⊙ ∇(u)) )dΩf + -# ∫( φ ⋅ ( (J∘∇(u)) * ρ_f * vt ) )dΩf -# da_f((u,v,p),(ut,vt,pt),(du,dv,dp),(ϕ,φ,q)) = -# ∫( α_m * (∇(ϕ) ⊙ ∇(du)) )dΩf + -# ∫( φ ⋅ ( (dJ∘(∇(u),∇(du))) * ρ_f * vt ) )dΩf -# da_t_f((u,v,p),(dut,dvt,dpt),(ϕ,φ,q)) = ∫( φ ⋅ ( (J∘∇(u)) * ρ_f * dvt ) )dΩf -# a_fsi((u,v,p),(ϕ,φ,q)) = ∫( ϕ⋅u + φ⋅v + q*p )dΩf + ∫( ϕ⋅u + φ⋅v + q*p )dΩs -# l_f(t,(ϕ,φ,q)) = ∫( ϕ⋅fu_Ωf(t) )dΩf -# l_fsi(t,(ϕ,φ,q)) = ∫( φ⋅fv_Ωf(t) )dΩf -# res(t,(x,xt),y) = a_f(x,xt,y) + a_fsi(x,y) + a_fsi(xt,y) - l_f(t,y) - l_fsi(t,y) -# jac(t,(x,xt),dx,y) = da_f(x,xt,dx,y) + a_fsi(dx,y) -# jac_t(t,(x,xt),dxt,y) = da_t_f(x,dxt,y) + a_fsi(dxt,y) -# op_FSI = TransientFEOperator(res,jac,jac_t,X_FSI,Y_FSI) - -# Setup output files -folderName = "fsi-results" -fileName = "fields" -if !isdir(folderName) - mkdir(folderName) -end -filePath = join([folderName, fileName], "/") - -# Solve Stokes problem -println("Defining Stokes solver") -xh = solve(op_ST) -writevtk(Ω_f, filePath, cellfields = ["uh"=>xh[1], "vh"=>xh[2], "ph"=>xh[3]]) - -# Compute Stokes solution L2-norm -l2(w) = w⋅w -eu_ST = u(0.0) - xh[1] -ev_ST = v(0.0) - xh[2] -ep_ST = p(0.0) - xh[3] -eul2_ST = sqrt(∑( ∫(l2(eu_ST))dΩf )) -evl2_ST = sqrt(∑( ∫(l2(ev_ST))dΩf )) -epl2_ST = sqrt(∑( ∫(l2(ep_ST))dΩf )) -println("Stokes L2-norm u: ", eul2_ST) -println("Stokes L2-norm v: ", evl2_ST) -println("Stokes L2-norm p: ", epl2_ST) -@test eul2_ST < 1.0e-10 -@test evl2_ST < 1.0e-10 -@test epl2_ST < 1.0e-10 - -# Solve FSI problem -println("Defining FSI solver") -xh0 = interpolate_everywhere([u(0.0),v(0.0),p(0.0)],X_FSI(0.0)) -nls = NLSolver( -show_trace = true, -method = :newton, -linesearch = BackTracking(), -ftol = 1.0e-10, -iterations = 50 -) -odes = ThetaMethod(nls, dt, 0.5) -solver = TransientFESolver(odes) -xht = solve(solver, op_FSI, xh0, t0, tf) - -for (i,(xh, t)) in enumerate(xht) - println("STEP: $i, TIME: $t") - println("============================") - - # Compute errors - eu = u(t) - xh[1] - ev = v(t) - xh[2] - ep = p(t) - xh[3] - eul2 = sqrt(∑( ∫(l2(eu))dΩ )) - evl2 = sqrt(∑( ∫(l2(ev))dΩ )) - epl2 = sqrt(∑( ∫(l2(ep))dΩ )) - - # Test checks - println("FSI L2-norm u: ", eul2) - println("FSI L2-norm v: ", evl2) - println("FSI L2-norm p: ", epl2) -end \ No newline at end of file