Skip to content

Latest commit

 

History

History
108 lines (69 loc) · 4.05 KB

model_changes.md

File metadata and controls

108 lines (69 loc) · 4.05 KB

Model Changes

Major changes with updating to portalcasting 0.15.0

2019-11-13

Adding NaiveArima, jags_RW, and simplexEDM models

See for jags_RW and simplexEDM. NaiveArima added in 0.9.0

Adding exclosure treatment level as a data set

See

Now the only models that get interpolated data are the ones that need them

See

Ensemble is now an unweighted average

See

With switch to portalcasting 0.15.0

Relevant PR

Bottom-end catching in nbGARCH and nbsGARCH

2019-03-21

In nbGARCH and then extended into nbsGARCH, the models fall back to a Poisson distribution if the negative binomial fit fails. Previously (with only nbGARCH) the Poisson fit always succeeded in those back-ups, but now (with nbsGARCH) that sometimes isn't the case (because the predictor model is more complex) and even the Poisson fit can fail. So now for both models, if that fit fails, we follow what occurs in pevGARCH which is to use the fcast0 forecast of 0s and an arbitrarily high AIC (1e6).

In portalcasting 0.7.0

Relevant PR

Setting up pevGARCH to properly hindcast

2019-03-20

pevGARCH() was not set up for hindcasting within the pipeline based off of the historical covariate forecasts. There's now smooth integration via a few additional elements in the metadata list (covariate_source and covariate_date_made) which are only presently used for hindcasts but may prove to be useful with future models in forecast mode as well.

In portalcasting 0.6.0

Relevant PR

Addition of nbsGARCH

2019-03-19

In portalcasting 0.5.0

Relevant PR

Addition of species-level fits for AutoArima and ESSS

2018-12-12

With the migration of code to [portalcasting](https://github.com/weecology/portalcasting

Relevant PR

Removal of Box-Cox transformation in AutoArima

2018-03-20

The Box-Cox transformation was removed from the AutoArima model to have all of the models be predicting the same data.

Relevant PR

Switch predictions of covariates

2018-03-15

Covariate (weather and NDVI) were changed from recent averages to predicted values. We are currently using downscaled ENSMEAN climate predictions and a local NDVI forecast (using a seasonal auto ARIMA).

Relevant PR

Add intercept-only option in pevGARCH

2018-02-08

Associated with the shift to newmoons, the pevGARCH model set was expanded to include an intercept-only model.

Relevant PR

Shift to newmoon-based modeling & interpolate missing values

2018-02-08

In Feb 2018, the models were edited to work on the newmoon numbers, thereby requiring acknowledgment of missing surveys (i.e. newmoons where a complete survey was not conducted). Because the models do not handle missing values, we decided to interpolate missing data for the time being.

Relevant PRs: ESSS, AutoArima, nbGARCH, and pevGARCH.