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environment.yml
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environment.yml
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name: skipguide_data_processing
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _tflow_select=2.3.0=mkl
- absl-py=0.8.1=py37_0
- astor=0.8.0=py37_0
- attrs=19.3.0=py_0
- backcall=0.1.0=py37_0
- biopython=1.74=py37h7b6447c_0
- blas=1.0=mkl
- bleach=3.1.0=py37_0
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.15.0=h7b6447c_1001
- ca-certificates=2020.10.14=0
- certifi=2020.6.20=py37_0
- click=7.0=py37_0
- coloredlogs=10.0=py37_0
- curl=7.67.0=hbc83047_0
- cycler=0.10.0=py37_0
- cython=0.29.14=py37he6710b0_0
- cyvcf2=0.11.5=py37h2a6ed93_0
- dbus=1.13.12=h746ee38_0
- decorator=4.4.1=py_0
- defusedxml=0.6.0=py_0
- entrypoints=0.3=py37_0
- expat=2.2.6=he6710b0_0
- fontconfig=2.13.0=h9420a91_0
- freetype=2.9.1=h8a8886c_1
- gast=0.3.2=py_0
- glib=2.63.1=h5a9c865_0
- gmp=6.1.2=h6c8ec71_1
- google-pasta=0.1.8=py_0
- grpcio=1.16.1=py37hf8bcb03_1
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- h5py=2.9.0=py37h7918eee_0
- hdf5=1.10.4=hb1b8bf9_0
- htslib=1.9=h4da6232_3
- humanfriendly=4.18=py37_0
- icu=58.2=h9c2bf20_1
- importlib_metadata=1.3.0=py37_0
- intel-openmp=2019.4=243
- ipykernel=5.1.3=py37h39e3cac_0
- ipython=7.11.1=py37h39e3cac_0
- ipython_genutils=0.2.0=py37_0
- ipywidgets=7.5.1=py_0
- jedi=0.15.2=py37_0
- jinja2=2.10.3=py_0
- jpeg=9b=h024ee3a_2
- jsonschema=3.2.0=py37_0
- jupyter_client=5.3.4=py37_0
- jupyter_core=4.6.1=py37_0
- keras=2.2.4=0
- keras-applications=1.0.8=py_0
- keras-base=2.2.4=py37_0
- keras-preprocessing=1.1.0=py_1
- kiwisolver=1.1.0=py37he6710b0_0
- krb5=1.16.4=h173b8e3_0
- libcurl=7.67.0=h20c2e04_0
- libdeflate=1.2=h516909a_1
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.11.2=hd408876_0
- libsodium=1.0.16=h1bed415_0
- libssh2=1.8.2=h1ba5d50_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- libuuid=1.0.3=h1bed415_2
- libxcb=1.13=h1bed415_1
- libxml2=2.9.9=hea5a465_1
- markdown=3.1.1=py37_0
- markupsafe=1.1.1=py37h7b6447c_0
- matplotlib=3.1.1=py37h5429711_0
- mistune=0.8.4=py37h7b6447c_0
- mkl=2018.0.3=1
- mkl_fft=1.0.6=py37h7dd41cf_0
- mkl_random=1.0.1=py37h4414c95_1
- mock=3.0.5=py37_0
- more-itertools=8.0.2=py_0
- nb_conda=2.2.1=py37_0
- nb_conda_kernels=2.2.2=py37_0
- nbconvert=5.6.1=py37_0
- nbformat=4.4.0=py37_0
- ncurses=6.1=he6710b0_1
- notebook=6.0.2=py37_0
- numpy=1.15.4=py37h1d66e8a_0
- numpy-base=1.15.4=py37h81de0dd_0
- openssl=1.1.1h=h7b6447c_0
- pandoc=2.2.3.2=0
- pandocfilters=1.4.2=py37_1
- parso=0.5.2=py_0
- patsy=0.5.1=py37_0
- pcre=8.43=he6710b0_0
- pexpect=4.7.0=py37_0
- pickleshare=0.7.5=py37_0
- pip=19.3.1=py37_0
- prometheus_client=0.7.1=py_0
- prompt_toolkit=3.0.2=py_0
- protobuf=3.11.2=py37he6710b0_0
- ptyprocess=0.6.0=py37_0
- pygments=2.5.2=py_0
- pyparsing=2.4.6=py_0
- pyqt=5.9.2=py37h05f1152_2
- pyrsistent=0.15.6=py37h7b6447c_0
- python=3.7.5=h0371630_0
- python-dateutil=2.8.1=py_0
- pytz=2019.3=py_0
- pyyaml=5.2=py37h7b6447c_0
- pyzmq=18.1.0=py37he6710b0_0
- qt=5.9.7=h5867ecd_1
- readline=7.0=h7b6447c_5
- regex=2020.1.8=py37h516909a_0
- scipy=1.1.0=py37hfa4b5c9_1
- seaborn=0.9.0=pyh91ea838_1
- send2trash=1.5.0=py37_0
- setuptools=44.0.0=py37_0
- sip=4.19.8=py37hf484d3e_0
- six=1.13.0=py37_0
- sqlite=3.30.1=h7b6447c_0
- statsmodels=0.10.1=py37hdd07704_0
- tbb=2019.8=hfd86e86_0
- tbb4py=2019.8=py37hfd86e86_0
- tensorboard=1.13.1=py37_0
- tensorflow=1.13.1=py37h90a7d86_1
- tensorflow-estimator=1.13.0=py_0
- termcolor=1.1.0=py37_1
- terminado=0.8.3=py37_0
- testpath=0.4.4=py_0
- tk=8.6.8=hbc83047_0
- tornado=6.0.3=py37h7b6447c_0
- tqdm=4.40.2=py_0
- traitlets=4.3.3=py37_0
- wcwidth=0.1.7=py37_0
- webencodings=0.5.1=py37_1
- werkzeug=0.16.0=py_0
- wheel=0.33.6=py37_0
- widgetsnbextension=3.5.1=py37_0
- wrapt=1.11.2=py37h7b6447c_0
- xlrd=1.2.0=py37_0
- xz=5.2.4=h14c3975_4
- yaml=0.1.7=had09818_2
- zeromq=4.3.1=he6710b0_3
- zipp=0.6.0=py_0
- zlib=1.2.11=h7b6447c_3
- pip:
- argcomplete==1.11.0
- argh==0.26.2
- arrow==0.15.5
- binaryornot==0.4.4
- chardet==3.0.4
- colorlog==4.1.0
- concise==0.6.8
- cookiecutter==1.7.0
- deprecation==2.0.7
- descartes==1.1.0
- future==0.18.2
- gffutils==0.10.1
- gtfparse==1.2.0
- idna==2.8
- jinja2-time==0.2.0
- kipoi==0.6.25
- kipoi-conda==0.2.2
- kipoi-utils==0.3.8
- kipoiseq==0.2.7
- mmsplice==1.0.2
- natsort==7.0.0
- ncls==0.0.51
- packaging==20.0
- pandas==1.1.3
- poyo==0.5.0
- pybedtools==0.8.1
- pyfaidx==0.5.7
- pyranges==0.0.67
- pyrle==0.0.27
- pysam==0.15.3
- related==0.7.2
- requests==2.22.0
- scikit-learn==0.20.0
- shapely==1.6.4.post2
- simplejson==3.17.0
- sorted-nearest==0.0.31
- spliceai==1.3.1
- tabulate==0.8.6
- tinydb==3.15.2
- urllib3==1.25.7
- whichcraft==0.6.1
prefix: /data/gl/g6/wlouie/anaconda3/envs/skipguide_data_processing