From 5cab2112c68622698f8cb073aaaebb0dafa041ba Mon Sep 17 00:00:00 2001 From: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com> Date: Fri, 26 Jul 2024 17:01:23 -0600 Subject: [PATCH 1/3] Update post-create.sh --- .devcontainer/post-create.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.devcontainer/post-create.sh b/.devcontainer/post-create.sh index 1918861..51516fa 100644 --- a/.devcontainer/post-create.sh +++ b/.devcontainer/post-create.sh @@ -1,5 +1,5 @@ #!/bin/bash -pip3 install schematicpy==24.5.1 ipython==8.18.1 +pip3 install schematicpy==24.7.2 sudo bash < <(curl -s https://raw.githubusercontent.com/babashka/babashka/master/install) git clone --depth 1 https://github.com/anngvu/retold.git From f925e74256d75e217c171894cde005d9f96771e5 Mon Sep 17 00:00:00 2001 From: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com> Date: Fri, 26 Jul 2024 17:02:54 -0600 Subject: [PATCH 2/3] Rename schematic-schema-convert.yml to main-ci.yml --- .github/workflows/{schematic-schema-convert.yml => main-ci.yml} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename .github/workflows/{schematic-schema-convert.yml => main-ci.yml} (100%) diff --git a/.github/workflows/schematic-schema-convert.yml b/.github/workflows/main-ci.yml similarity index 100% rename from .github/workflows/schematic-schema-convert.yml rename to .github/workflows/main-ci.yml From 931838bd47de6a2b540bf95682bc8acce81892cd Mon Sep 17 00:00:00 2001 From: gf-dcc-service Date: Fri, 26 Jul 2024 23:05:34 +0000 Subject: [PATCH 3/3] Build jsonld --- GF.jsonld | 97641 ++++++++++++++++++++++++++++++++-------------------- 1 file changed, 59998 insertions(+), 37643 deletions(-) diff --git a/GF.jsonld b/GF.jsonld index 3d56a10..a98a1c7 100644 --- a/GF.jsonld +++ b/GF.jsonld @@ -1,37645 +1,60000 @@ { - "@context" : { - "bts" : "http://schema.biothings.io/", - "linkml" : "https://w3id.org/linkml/", - "rdf" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#", - "rdfs" : "http://www.w3.org/2000/01/rdf-schema#", - "schema" : "http://schema.org/", - "xsd" : "http://w3.org/2001/XMLSchema#" - }, - "@id" : "http://schema.biothings.io/", - "@graph" : [ { - "@id" : "bts:IndicatorEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "IndicatorEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "IndicatorEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BreastCancerAssessmentTestsEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "BreastCancerAssessmentTestsEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BreastCancerAssessmentTestsEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:HereditaryCancerPredispositionSyndromeEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "HereditaryCancerPredispositionSyndromeEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "HereditaryCancerPredispositionSyndromeEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BreastCarcinomaDetectionMethodTypeEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "BreastCarcinomaDetectionMethodTypeEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BreastCarcinomaDetectionMethodTypeEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:CancerAssociatedGeneMutationsEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "CancerAssociatedGeneMutationsEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "CancerAssociatedGeneMutationsEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:RelativewithCancerHistoryEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "RelativewithCancerHistoryEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "RelativewithCancerHistoryEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:EthnicityEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "EthnicityEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "EthnicityEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:ImmersionEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "ImmersionEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ImmersionEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BreastCancerGenomicTestPerformedEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "BreastCancerGenomicTestPerformedEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BreastCancerGenomicTestPerformedEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:FileFormatEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "FileFormatEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "FileFormatEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:DimensionOrderEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "DimensionOrderEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "DimensionOrderEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SexEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "SexEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SexEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:AlcoholIntensityEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "AlcoholIntensityEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AlcoholIntensityEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:ImagingAssayTypeEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "ImagingAssayTypeEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ImagingAssayTypeEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:PassedQCEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "PassedQCEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PassedQCEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:ExtentofTumorResectionEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "ExtentofTumorResectionEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ExtentofTumorResectionEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:ReverseTranscriptionPrimerEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "ReverseTranscriptionPrimerEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ReverseTranscriptionPrimerEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TobaccoUseEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "TobaccoUseEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TobaccoUseEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:CountryofResidenceEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "CountryofResidenceEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "CountryofResidenceEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:OncotypeRiskGroupEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "OncotypeRiskGroupEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "OncotypeRiskGroupEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:PathogenicityEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "PathogenicityEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PathogenicityEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:LabTestsforMMRStatusEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "LabTestsforMMRStatusEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "LabTestsforMMRStatusEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:LibraryConstructionMethodEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "LibraryConstructionMethodEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "LibraryConstructionMethodEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BisulfiteConversionKitEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "BisulfiteConversionKitEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BisulfiteConversionKitEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TotalVolumeUnitEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - 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"@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ClonalityEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:InvasiveDuctalBreastCarcinomaHistologicCategoryEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "InvasiveDuctalBreastCarcinomaHistologicCategoryEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "InvasiveDuctalBreastCarcinomaHistologicCategoryEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:IschemicTemperatureEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "IschemicTemperatureEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "IschemicTemperatureEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:AgeIsObfuscatedEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "AgeIsObfuscatedEnum", - "rdfs:subClassOf" : [ ], - 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"sms:displayName" : "AlcoholUseEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:VascularInvasionTypeEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "VascularInvasionTypeEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "VascularInvasionTypeEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:StainingIntensityEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "StainingIntensityEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "StainingIntensityEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:MutationalSignaturesEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "MutationalSignaturesEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "MutationalSignaturesEnum", - 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}, { - "@id" : "bts:ModeofCancerDetectionEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "ModeofCancerDetectionEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ModeofCancerDetectionEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:DiagnosisEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "DiagnosisEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "DiagnosisEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BreastBiopsyProcedureFindingTypeEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "BreastBiopsyProcedureFindingTypeEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BreastBiopsyProcedureFindingTypeEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:AlcoholTypeEnum", - 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"@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "DimensionsUnitEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "DimensionsUnitEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:MarkerStatus", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "MarkerStatus", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "MarkerStatus", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TestAnalyteTypeEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "TestAnalyteTypeEnum", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TestAnalyteTypeEnum", - "sms:required" : "sms:false" - }, { - "@id" : "bts:ZygosityEnum", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "ZygosityEnum", - "rdfs:subClassOf" : [ ], - 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"rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "YearsSmoked", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:RelationshipGender", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Female" - }, { - "@id" : "bts:Male" - }, { - "@id" : "bts:Unspecified" - }, { - "@id" : "bts:Unknown" - } ], - "rdfs:label" : "RelationshipGender", - "rdfs:comment" : "The text term used to describe the gender of the patient's relative with a history of cancer.", - "@type" : "rdfs:Class", - "sms:displayName" : "RelationshipGender" - }, { - "@id" : "bts:AdjacentSampleIDs", - "@type" : "rdfs:Class", - "rdfs:comment" : "List of Identifiers (separated by commas) of adjacent biospecimens cut from the same sample", - "rdfs:label" : "AdjacentSampleIDs", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AdjacentSampleIDs", - "sms:required" : "sms:false" - }, { - "@id" : "bts:AdapterSequence", - "@type" : "rdfs:Class", - "rdfs:comment" : "Base sequence of the sequencing adapter. String", - "rdfs:label" : "AdapterSequence", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AdapterSequence", - "sms:required" : "sms:false" - }, { - "@id" : "bts:DaystoDeath", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of days between the date used for index and the date from a person's date of death represented as a calculated number of days.", - "rdfs:label" : "DaystoDeath", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "DaystoDeath", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SentinelLymphNodeCount", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric count of sentinel lymph nodes.", - "rdfs:label" : "SentinelLymphNodeCount", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SentinelLymphNodeCount", - "sms:required" : "sms:false" - }, { - "@id" : "bts:StopDaysfromIndex", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of days from the date of birth (index date) to the end date of the event (e.g. exposure to environmental factor, treatment start, etc.). Note: if the event occurs at a single time point, e.g. a diagnosis or a lab test, the values for this column is 'Not Applicable'", - "rdfs:label" : "StopDaysfromIndex", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "StopDaysfromIndex", - "sms:required" : "sms:false" - }, { - "@id" : "bts:NumberofDrinksPerWeek", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "NumberofDrinksPerWeek", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "NumberofDrinksPerWeek", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SentinelNodePositiveAssessmentCount", - "@type" : "rdfs:Class", - "rdfs:comment" : "The number or amount of metastatic neoplasms related to the confirmed presence of disease or specific microorganisms during examination of the first rounded mass of lymphatic tissue to which cancer is likely to spread from the primary tumor.", - "rdfs:label" : "SentinelNodePositiveAssessmentCount", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SentinelNodePositiveAssessmentCount", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:PreservationMethod", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Negative80DegC" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Cryopreservationindryice-deadtissue" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Fresh" - }, { - "@id" : "bts:Cryopreservationinliquidnitrogen-deadtissue" - }, { - "@id" : "bts:Formalinfixedparaffinembedded-FFPE" - }, { - "@id" : "bts:Archival" - }, { - "@id" : "bts:Formalinfixed-buffered" - }, { - "@id" : "bts:Formalinfixed-unbuffered" - }, { - "@id" : "bts:Cryopreserved" - }, { - "@id" : "bts:Frozen" - }, { - "@id" : "bts:Freshdissociatedandsinglecellsorted" - }, { - "@id" : "bts:FreshdissociatedandsinglecellsortedintoplatesinNP40buffer" - }, { - "@id" : "bts:Methacarnfixedparaffinembedded-MFPE" - }, { - "@id" : "bts:Freshdissociated" - }, { - "@id" : "bts:Freshdissociatedandsinglecellsortedintoplates" - }, { - "@id" : "bts:Cryopreservationinliquidnitrogen-livecells" - }, { - "@id" : "bts:OCT" - }, { - "@id" : "bts:SnapFrozen" - }, { - "@id" : "bts:LiquidNitrogen" - } ], - "rdfs:label" : "PreservationMethod", - "rdfs:comment" : "Text term that represents the method used to preserve the sample.", - "@type" : "rdfs:Class", - "sms:displayName" : "PreservationMethod" - }, { - "@id" : "bts:Ecigvapeuse", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Ecigvapeuse", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Ecigvapeuse", - "sms:required" : "sms:false" - }, { - "@id" : "bts:PublicationDOI", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "PublicationDOI", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PublicationDOI", - "sms:required" : "sms:false" - }, { - "@id" : "bts:DaystoBirth", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of days between the date used for index and the date from a person's date of birth represented as a calculated negative number of days.", - "rdfs:label" : "DaystoBirth", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "DaystoBirth", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TestUnits", - "@type" : "rdfs:Class", - "rdfs:comment" : "The text term used to describe the units of the test value for a molecular test. This property is used in conjunction with test_value. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "TestUnits", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TestUnits", - "sms:required" : "sms:false" - }, { - "@id" : "bts:AdjacentBiospecimenIDs", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "AdjacentBiospecimenIDs", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AdjacentBiospecimenIDs", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:BreastBiopsyProcedureFindingType", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Other" - }, { - "@id" : "bts:Atypicalhyperplasia" - }, { - "@id" : "bts:DCIS" - }, { - "@id" : "bts:LCIS" - }, { - "@id" : "bts:Cancer" - }, { - "@id" : "bts:Nocancer" - } ], - "rdfs:label" : "BreastBiopsyProcedureFindingType", - "rdfs:comment" : "Text term to describe the result of the examination of the breast tissue specimen or fluid as related to the presence and nature of disease.", - "@type" : "rdfs:Class", - "sms:displayName" : "BreastBiopsyProcedureFindingType" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:LibraryLayout", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:PairedEnd" - }, { - "@id" : "bts:SingleRead" - }, { - "@id" : "bts:Mid-length" - }, { - "@id" : "bts:LongRead" - } ], - "rdfs:label" : "LibraryLayout", - "rdfs:comment" : "Sequencing read type", - "@type" : "rdfs:Class", - "sms:displayName" : "LibraryLayout" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:SpecimenLaterality", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:NotApplicable" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Bilateral" - }, { - "@id" : "bts:Left" - }, { - "@id" : "bts:Right" - } ], - "rdfs:label" : "SpecimenLaterality", - "rdfs:comment" : "For samples in paired organs, designates the side from which obtained.", - "@type" : "rdfs:Class", - "sms:displayName" : "SpecimenLaterality" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:BreastCarcinomaHistologyCategory", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Other" - }, { - "@id" : "bts:Infiltratingductalcarcinoma" - }, { - "@id" : "bts:Infiltratinglobularcarcinoma" - }, { - "@id" : "bts:InvasivemammarycarcinomaNOS" - }, { - "@id" : "bts:Invasivemixedductalandlobularcarcinoma" - } ], - "rdfs:label" : "BreastCarcinomaHistologyCategory", - "rdfs:comment" : "Classification of the type of invasive breast carcinoma diagnosed based on histologic attributes.", - "@type" : "rdfs:Class", - "sms:displayName" : "BreastCarcinomaHistologyCategory" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:SingleCellIsolationMethod", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:MicrofluidicsChip" - }, { - "@id" : "bts:Droplets" - }, { - "@id" : "bts:FACS" - }, { - "@id" : "bts:Plates" - }, { - "@id" : "bts:10x" - }, { - "@id" : "bts:NucleiIsolation" - } ], - "rdfs:label" : "SingleCellIsolationMethod", - "rdfs:comment" : "The method by which cells are isolated into individual reaction containers at a single cell resolution (e.g. wells, micro-droplets)", - "@type" : "rdfs:Class", - "sms:displayName" : "SingleCellIsolationMethod" - }, { - "@id" : "bts:UMIBarcodeOffset", - "@type" : "rdfs:Class", - "rdfs:comment" : "Start position of UMI barcode in the sequence. Values: number, 0 for start of read", - "rdfs:label" : "UMIBarcodeOffset", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "UMIBarcodeOffset", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:DimensionsUnit", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:cm" - }, { - "@id" : "bts:mm" - } ], - "rdfs:label" : "DimensionsUnit", - "rdfs:comment" : "Unit of measurement used for dimension CDEs in metric system (i.e. cm, mm, etc)", - "@type" : "rdfs:Class", - "sms:displayName" : "DimensionsUnit" - }, { - "@id" : "bts:TypeofSmokeExposure", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "TypeofSmokeExposure", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TypeofSmokeExposure", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SizeC", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of channels. Integer >= 1", - "rdfs:label" : "SizeC", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SizeC", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SpecializedMolecularTest", - "@type" : "rdfs:Class", - "rdfs:comment" : "Text term used to describe a specific test that is not covered in the list of molecular analysis methods. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "SpecializedMolecularTest", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SpecializedMolecularTest", - "sms:required" : "sms:false" - }, { - "@id" : "bts:Locus", - "@type" : "rdfs:Class", - "rdfs:comment" : "Alphanumeric value used to describe the locus of a specific genetic variant. Example: NM_001126114.", - "rdfs:label" : "Locus", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Locus", - "sms:required" : "sms:false" - }, { - "@id" : "bts:PlaneCount", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of Z-planes (not to be confused with downsampled \"\"pyramid\"\"). Integer >=1", - "rdfs:label" : "PlaneCount", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PlaneCount", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:DissociationMethod", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:NotApplicable" - }, { - "@id" : "bts:gentleMACS" - }, { - "@id" : "bts:Dounce" - }, { - "@id" : "bts:EnzymaticDigestion" - } ], - "rdfs:label" : "DissociationMethod", - "rdfs:comment" : "The tissue dissociation method used for scRNASeq or scATAC-seq assays", - "@type" : "rdfs:Class", - "sms:displayName" : "DissociationMethod" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:PRStainingIntensity", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Other" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Strong" - }, { - "@id" : "bts:Moderate" - }, { - "@id" : "bts:Weak" - }, { - "@id" : "bts:Weak-Moderate" - }, { - "@id" : "bts:Moderate-Strong" - }, { - "@id" : "bts:Weak-Strong" - } ], - "rdfs:label" : "PRStainingIntensity", - "rdfs:comment" : "Text term to indicate the PR staining intensity on pathology assessment in a participant with breast cancer", - "@type" : "rdfs:Class", - "sms:displayName" : "PRStainingIntensity" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:BreastCarcinomaSurgicalProcedureName", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Radicalmastectomy" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Simplemastectomy" - }, { - "@id" : "bts:Modifiedradicalmastectomy" - }, { - "@id" : "bts:Partialmastectomy" - }, { - "@id" : "bts:Surgerynotperformed" - }, { - "@id" : "bts:Other" - }, { - "@id" : "bts:Lumpectomy" - }, { - "@id" : "bts:Re-excision" - } ], - "rdfs:label" : "BreastCarcinomaSurgicalProcedureName", - "rdfs:comment" : "Text name of a surgical procedure performed for a person with a diagnosis of breast cancer", - "@type" : "rdfs:Class", - "sms:displayName" : "BreastCarcinomaSurgicalProcedureName" - }, { - "@id" : "bts:BreastCarcinomaERStatusPercentageValue", - "@type" : "rdfs:Class", - "rdfs:comment" : "A numerical quantity measured or assigned or computed which captures the estrogen receptor level measured in a participant with breast cancer", - "rdfs:label" : "BreastCarcinomaERStatusPercentageValue", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BreastCarcinomaERStatusPercentageValue", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BreastCarcinomaPRStatusPercentageValue", - "@type" : "rdfs:Class", - "rdfs:comment" : "A numerical quantity measured or assigned or computed which captures the progesterone receptor level measured in a participant with breast cancer", - "rdfs:label" : "BreastCarcinomaPRStatusPercentageValue", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BreastCarcinomaPRStatusPercentageValue", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:TobaccoSmokingStatus", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ ], - "rdfs:label" : "TobaccoSmokingStatus", - "rdfs:comment" : "Category describing current smoking status and smoking history as self-reported by a patient", - "@type" : "rdfs:Class", - "sms:displayName" : "TobaccoSmokingStatus" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:VariantOrigin", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Germline" - }, { - "@id" : "bts:Somatic" - } ], - "rdfs:label" : "VariantOrigin", - "rdfs:comment" : "The text term used to describe the biological origin of a specific genetic variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "@type" : "rdfs:Class", - "sms:displayName" : "VariantOrigin" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:CauseofDeath", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:RenalDisorderNOS" - }, { - "@id" : "bts:Toxicity" - }, { - "@id" : "bts:CardiovascularDisorderNOS" - }, { - "@id" : "bts:Unknown" - }, { - "@id" : "bts:NotApplicable" - }, { - "@id" : "bts:Infection" - }, { - "@id" : "bts:SpinalMuscularAtrophy" - }, { - "@id" : "bts:CancerRelated" - }, { - "@id" : "bts:End-stageRenalDisease" - }, { - "@id" : "bts:SurgicalComplications" - }, { - "@id" : "bts:NotCancerRelated" - } ], - "rdfs:label" : "CauseofDeath", - "rdfs:comment" : "The cause of death", - "@type" : "rdfs:Class", - "sms:displayName" : "CauseofDeath" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:BreastCarcinomaHER2Status", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Equivocal" - }, { - "@id" : "bts:Indeterminate" - }, { - "@id" : "bts:Negative" - }, { - "@id" : "bts:NotPerformed" - }, { - "@id" : "bts:Positive" - }, { - "@id" : "bts:Amplified" - }, { - "@id" : "bts:Non-amplified" - } ], - "rdfs:label" : "BreastCarcinomaHER2Status", - "rdfs:comment" : "Text term to signify the result of the medical procedure that involves testing a sample of blood or tissue for HER2 in a participant with breast cancer", - "@type" : "rdfs:Class", - "sms:displayName" : "BreastCarcinomaHER2Status" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:CryopreservedCellsinSample", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:Yes" - }, { - "@id" : "bts:No" - }, { - "@id" : "bts:NotDocumented" - } ], - "rdfs:label" : "CryopreservedCellsinSample", - "rdfs:comment" : "Indicate if library preparation was based on revived frozen cells.", - "@type" : "rdfs:Class", - "sms:displayName" : "CryopreservedCellsinSample" - }, { - "@id" : "bts:TotalNumberofInputCells", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of cells loaded/placed on plates", - "rdfs:label" : "TotalNumberofInputCells", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TotalNumberofInputCells", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:LabTestsforMMRStatus", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:NotApplicable" - }, { - "@id" : "bts:Other" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:IHCstainingformismatchrepairproteins" - }, { - "@id" : "bts:PCRtoevaluatemicrosatelliteinstability" - }, { - "@id" : "bts:MLH1 promotermethylationanalysis" - }, { - "@id" : "bts:BRAF sequencing" - } ], - "rdfs:label" : "LabTestsforMMRStatus", - "rdfs:comment" : "Laboratory tests used to evaluate the status of mismatch repair pathways", - "@type" : "rdfs:Class", - "sms:displayName" : "LabTestsforMMRStatus" - }, { - "@id" : "bts:MetalIsotopeElement", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "MetalIsotopeElement", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "MetalIsotopeElement", - "sms:required" : "sms:false" - }, { - "@id" : "bts:ValidBarcodesCellNumber", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number", - "rdfs:label" : "ValidBarcodesCellNumber", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ValidBarcodesCellNumber", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TobaccoSmokingQuitYear", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "TobaccoSmokingQuitYear", - 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}, { - "@id" : "bts:SampleIndexandDNAInsert" - }, { - "@id" : "bts:DNAInsert" - }, { - "@id" : "bts:SampleIndex" - }, { - "@id" : "bts:CellBarcode" - } ], - "rdfs:label" : "Read1", - "rdfs:comment" : "Read 1 content description", - "@type" : "rdfs:Class", - "sms:displayName" : "Read1" - }, { - "@id" : "bts:Exon", - "@type" : "rdfs:Class", - "rdfs:comment" : "Exon number targeted or included in a molecular analysis. If a specific genetic variant is being reported, this property can be used to capture the exon where that variant is located. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "Exon", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Exon", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:SmokingFrequency", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Everyday" - }, { - "@id" : "bts:Somedays" - }, { - "@id" : "bts:unknown" - } ], - "rdfs:label" : "SmokingFrequency", - "rdfs:comment" : "The text term used to generally decribe how often the patient smokes.", - "@type" : "rdfs:Class", - "sms:displayName" : "SmokingFrequency" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:PhysicalSizeYUnit", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:cm" - }, { - "@id" : "bts:mm" - }, { - "@id" : "bts:µm" - }, { - "@id" : "bts:nm" - }, { - "@id" : "bts:Å" - } ], - "rdfs:label" : "PhysicalSizeYUnit", - "rdfs:comment" : "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "@type" : "rdfs:Class", - "sms:displayName" : "PhysicalSizeYUnit" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ReverseTranscriptionPrimer", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Featurebarcoding" - }, { - "@id" : "bts:Oligo-dT" - }, { - "@id" : "bts:Poly-dT" - }, { - "@id" : "bts:Random" - } ], - "rdfs:label" : "ReverseTranscriptionPrimer", - "rdfs:comment" : "An oligo to which new deoxyribonucleotides can be added by DNA polymerase [SO_0000112]. The type of primer used for reverse transcription, e.g. oligo-dT or random primer. This allows users to identify content of the cDNA library input e.g. enriched for mRNA", - "@type" : "rdfs:Class", - "sms:displayName" : "ReverseTranscriptionPrimer" - }, { - "@id" : "bts:MedianUMIsperCellNumber", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number", - "rdfs:label" : "MedianUMIsperCellNumber", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "MedianUMIsperCellNumber", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:TotalVolumeUnit", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:mL" - }, { - "@id" : "bts:mm^3" - }, { - "@id" : "bts:cm^2" - } ], - "rdfs:label" : "TotalVolumeUnit", - "rdfs:comment" : "Unit of measurement used for the total amount of sample or specimen", - "@type" : "rdfs:Class", - "sms:displayName" : "TotalVolumeUnit" - }, { - "@id" : "bts:COVID19PositiveLabTestIndicator", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "COVID19PositiveLabTestIndicator", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "COVID19PositiveLabTestIndicator", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SizeX", - "@type" : "rdfs:Class", - "rdfs:comment" : "Size of image: X dimension (in pixels). Integer >= 1", - "rdfs:label" : "SizeX", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SizeX", - "sms:required" : "sms:false" - }, { - "@id" : "bts:GenomeAnnotationURL", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "GenomeAnnotationURL", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "GenomeAnnotationURL", - "sms:required" : "sms:false" - }, { - "@id" : "bts:OligoBarcodeLowerStrand", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "OligoBarcodeLowerStrand", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "OligoBarcodeLowerStrand", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Read2", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:CellBarcodeandDNAInsert" - }, { - "@id" : "bts:SampleIndexandDNAInsert" - }, { - "@id" : "bts:DNAInsert" - }, { - "@id" : "bts:SampleIndex" - }, { - "@id" : "bts:CellBarcode" - } ], - "rdfs:label" : "Read2", - "rdfs:comment" : "Read 2 content description", - "@type" : "rdfs:Class", - "sms:displayName" : "Read2" - }, { - "@id" : "bts:TotalReads", - "@type" : "rdfs:Class", - "rdfs:comment" : "Total number of reads per sample. Integer", - "rdfs:label" : "TotalReads", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TotalReads", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:HistoneVariant", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:mH2A" - }, { - "@id" : "bts:mH2A.1" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:H2A.Z" - }, { - "@id" : "bts:H3.2" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:H3t(H3.4)" - }, { - "@id" : "bts:H3.X" - }, { - "@id" : "bts:H2A.Z.2.2" - }, { - "@id" : "bts:H3.Y" - }, { - "@id" : "bts:H3.5" - }, { - "@id" : "bts:H3.3" - }, { - "@id" : "bts:H3.1" - }, { - "@id" : "bts:H2A-Bbd" - }, { - "@id" : "bts:mH2A.2" - }, { - "@id" : "bts:CENP-A" - }, { - "@id" : "bts:H2A.Z.2" - }, { - "@id" : "bts:H2A.X" - }, { - "@id" : "bts:H2A.Z.1" - } ], - "rdfs:label" : "HistoneVariant", - "rdfs:comment" : "The text term used to describe a specific histone variants, which are proteins that substitute for the core canonical histones.", - "@type" : "rdfs:Class", - "sms:displayName" : "HistoneVariant" - }, { - "@id" : "bts:Chewingtobaccodailyusecount", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Chewingtobaccodailyusecount", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Chewingtobaccodailyusecount", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SecondGeneSymbol", - "@type" : "rdfs:Class", - "rdfs:comment" : "The text term used to describe a secondary gene targeted or included in molecular analysis. For rearrangements, this is should represent the location of the variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "SecondGeneSymbol", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SecondGeneSymbol", - "sms:required" : "sms:false" - }, { - "@id" : "bts:CycleNumber", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "CycleNumber", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "CycleNumber", - "sms:required" : "sms:false" - }, { - "@id" : "bts:GeneSymbol", - "@type" : "rdfs:Class", - "rdfs:comment" : "The text term used to describe a gene targeted or included in molecular analysis. For rearrangements, this is should be used to represent the reference gene. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "GeneSymbol", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "GeneSymbol", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:GenomicCoverageType", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:WholeGenome" - }, { - "@id" : "bts:TargetedGenome" - }, { - "@id" : "bts:BeadchipArray" - } ], - "rdfs:label" : "GenomicCoverageType", - "rdfs:comment" : "Genomic coverage", - "@type" : "rdfs:Class", - "sms:displayName" : "GenomicCoverageType" - }, { - "@id" : "bts:TargetDepth", - "@type" : "rdfs:Class", - "rdfs:comment" : "Targeted read depth prior to sequencing. Integer", - "rdfs:label" : "TargetDepth", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TargetDepth", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:PixelType", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:int32" - }, { - "@id" : "bts:int16" - }, { - "@id" : "bts:double" - }, { - "@id" : "bts:float" - }, { - "@id" : "bts:uint16" - }, { - "@id" : "bts:int8" - }, { - "@id" : "bts:uint32" - }, { - "@id" : "bts:bit" - }, { - "@id" : "bts:uint8" - } ], - "rdfs:label" : "PixelType", - "rdfs:comment" : "Data type for each pixel value. E.g. \"\"uint16\"\"", - "@type" : "rdfs:Class", - "sms:displayName" : "PixelType" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:VitalStatus", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Dead" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Alive" - } ], - "rdfs:label" : "VitalStatus", - "rdfs:comment" : "The survival state of the person registered on the protocol.", - "@type" : "rdfs:Class", - "sms:displayName" : "VitalStatus" - }, { - "@id" : "bts:ParentID", - "@type" : "rdfs:Class", - "rdfs:comment" : "ID of parent biospecimen", - "rdfs:label" : "ParentID", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ParentID", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:FileFormat", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:dat" - }, { - "@id" : "bts:Rscript" - }, { - "@id" : "bts:tif" - }, { - "@id" : "bts:bam" - }, { - "@id" : "bts:M" - }, { - "@id" : "bts:7z" - }, { - "@id" : "bts:csv" - }, { - "@id" : "bts:png" - }, { - "@id" : "bts:tar" - }, { - "@id" : "bts:bai" - }, { - "@id" : "bts:OME-TIFF" - }, { - "@id" : "bts:dup" - }, { - "@id" : "bts:hic" - }, { - "@id" : "bts:cellam" - }, { - "@id" : "bts:idat" - }, { - "@id" : "bts:txt" - }, { - "@id" : "bts:raw" - }, { - "@id" : "bts:hdf5" - }, { - "@id" : "bts:bgzip" - }, { - "@id" : "bts:seg" - }, { - "@id" : "bts:rmd" - }, { - "@id" : "bts:scn" - }, { - "@id" : "bts:vcf" - }, { - "@id" : "bts:maf" - }, { - "@id" : "bts:tsv" - }, { - "@id" : "bts:pdf" - }, { - "@id" : "bts:sam" - }, { - "@id" : "bts:bedgraph" - }, { - "@id" : "bts:sra" - }, { - "@id" : "bts:abf" - }, { - "@id" : "bts:fastq" - }, { - "@id" : "bts:pzfx" - }, { - "@id" : "bts:bednarrowPeak" - }, { - "@id" : "bts:fig" - 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Floating point value > 0.", - "rdfs:label" : "PhysicalSizeY", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PhysicalSizeY", - "sms:required" : "sms:false" - }, { - "@id" : "bts:MetalIsotopeMass", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "MetalIsotopeMass", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "MetalIsotopeMass", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BiospecimenDimension2", - "@type" : "rdfs:Class", - "rdfs:comment" : "Second dimension of tissue fragment (number, up to one decimal place) measured in units as defined by the \"\"dimensions_unit\"\" CDE", - "rdfs:label" : "BiospecimenDimension2", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BiospecimenDimension2", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - 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}, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Duplication" - }, { - "@id" : "bts:Conversion" - }, { - "@id" : "bts:Chrimerism" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:PartialMethylation" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Substitution" - }, { - "@id" : "bts:Deletion-Insertion" - }, { - "@id" : "bts:Loss" - }, { - "@id" : "bts:Insertion" - }, { - "@id" : "bts:Hypermethylation" - }, { - "@id" : "bts:Alleles" - }, { - "@id" : "bts:Methylation" - }, { - "@id" : "bts:Inversion" - }, { - "@id" : "bts:Extension" - }, { - "@id" : "bts:Mosaicism" - }, { - "@id" : "bts:Deletion" - }, { - "@id" : "bts:Other" - }, { - "@id" : "bts:Rearrangement" - }, { - "@id" : "bts:Translocation" - }, { - "@id" : "bts:Amplification" - }, { - "@id" : "bts:RepeatedSequences" - }, { - "@id" : "bts:Splice" - }, { - "@id" : "bts:Gain" - } ], - "rdfs:label" : "VariantType", - "rdfs:comment" : "The text term used to describe the type of genetic variation.", - 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"sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ReadContent", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:CellBarcodeandDNAInsert" - }, { - "@id" : "bts:SampleIndexandDNAInsert" - }, { - "@id" : "bts:DNAInsert" - }, { - "@id" : "bts:SampleIndex" - }, { - "@id" : "bts:CellBarcode" - } ], - "rdfs:label" : "ReadContent", - "rdfs:comment" : "Read content description", - "@type" : "rdfs:Class", - "sms:displayName" : "ReadContent" - }, { - "@id" : "bts:DaystoProgressionFree", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of days between the date used for index and the date the patient's disease was formally confirmed as progression-free.", - "rdfs:label" : "DaystoProgressionFree", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "DaystoProgressionFree", - "sms:required" : "sms:false" - }, { - 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} ], - "rdfs:label" : "MulticentricBreastCarcinomaPresentIndicator", - "rdfs:comment" : "A response to indicate if there is breast cancer characterized by the presence of multiple cancerous tumors that originate from different clones and usually located in different quadrants of the breast.", - "@type" : "rdfs:Class", - "sms:displayName" : "MulticentricBreastCarcinomaPresentIndicator" - }, { - "@id" : "bts:UMITag", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "UMITag", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "UMITag", - "sms:required" : "sms:false" - }, { - "@id" : "bts:CellBarcodeLength", - "@type" : "rdfs:Class", - "rdfs:comment" : "Length of cell barcode read (in bp): number", - "rdfs:label" : "CellBarcodeLength", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "CellBarcodeLength", - "sms:required" : "sms:false" - 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Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "CopyNumber", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "CopyNumber", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SectioningDaysfromIndex", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of days from the research participant's index date that the biospecimen was sectioned after collection", - "rdfs:label" : "SectioningDaysfromIndex", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SectioningDaysfromIndex", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Immersion", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Air" - }, { - "@id" : "bts:Oil" - }, { - "@id" : "bts:Water" - }, { - "@id" : "bts:Other" - } ], - "rdfs:label" : "Immersion", - "rdfs:comment" : "Immersion medium", - "@type" : "rdfs:Class", - "sms:displayName" : "Immersion" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Pyramid", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ ], - "rdfs:label" : "Pyramid", - "rdfs:comment" : "Does data file contain pyramid of images", - "@type" : "rdfs:Class", - "sms:displayName" : "Pyramid" - }, { - "@id" : "bts:SampleSite", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "SampleSite", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SampleSite", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:MismatchRepairSystemStatus", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:MismatchrepairdeficiencyMMRD" - }, { - "@id" : "bts:MismatchrepairproficiencyMMPP" - }, { - "@id" : "bts:MicrosatelliteinstabilityhighMSIH" - }, { - "@id" : "bts:MicrosatellitestableMSS" - }, { - "@id" : "bts:unknownorother" - } ], - "rdfs:label" : "MismatchRepairSystemStatus", - "rdfs:comment" : "The text that best describes the condition or state of MMR (mismatch repair system) in the patient", - "@type" : "rdfs:Class", - "sms:displayName" : "MismatchRepairSystemStatus" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Tseries", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Yes" - }, { - "@id" : "bts:No" - } ], - "rdfs:label" : "Tseries", - "rdfs:comment" : "Does data file contain a time-series of images", - "@type" : "rdfs:Class", - "sms:displayName" : "Tseries" - }, { - "@id" : "bts:Component", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Component", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Component", - "sms:required" : "sms:false" - }, { - "@id" : "bts:RelativeswithCancerHistoryCount", - "@type" : "rdfs:Class", - "rdfs:comment" : "The number of relatives the patient has with a known history of cancer.", - "rdfs:label" : "RelativeswithCancerHistoryCount", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "RelativeswithCancerHistoryCount", - "sms:required" : "sms:false" - }, { - "@id" : "bts:AlcoholDrinksPerDay", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric value used to describe the average number of alcoholic beverages a person consumes per day.", - "rdfs:label" : "AlcoholDrinksPerDay", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AlcoholDrinksPerDay", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:EndBias", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:3Prime" - }, { - "@id" : "bts:5Prime" - }, { - "@id" : "bts:FullLengthTranscript" - } ], - "rdfs:label" : "EndBias", - "rdfs:comment" : "The end of the cDNA molecule that is preferentially sequenced, e.g. 3/5 prime tag/end or the full length transcript", - "@type" : "rdfs:Class", - "sms:displayName" : "EndBias" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:SatelliteMetastasisPresentIndicator", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ ], - "rdfs:label" : "SatelliteMetastasisPresentIndicator", - "rdfs:comment" : "A yes/no indicator to ask if intransit metastases or satellite lesions are present.", - "@type" : "rdfs:Class", - "sms:displayName" : "SatelliteMetastasisPresentIndicator" - }, { - "@id" : "bts:ParentBiospecimenID", - "@type" : "rdfs:Class", - "rdfs:comment" : "Biospecimen identifier indicating the biospecimen(s) from which these files were derived; multiple parent biospecimen should be comma-separated", - "rdfs:label" : "ParentBiospecimenID", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ParentBiospecimenID", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:AlcoholUse", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:FormerDrinker" - }, { - "@id" : "bts:NeverDrinker" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Unknown" - } ], - "rdfs:label" : "AlcoholUse", - "rdfs:comment" : "Alcohol use characterization. More quantitative data may be available in NumberofDrinksPerWeek.", - "@type" : "rdfs:Class", - "sms:displayName" : "AlcoholUse" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:NucleusIdentifier", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ ], - "rdfs:label" : "NucleusIdentifier", - "rdfs:comment" : "Unique nuclei barcode; added at transposition step. Determines which nucleus the reads originated from", - "@type" : "rdfs:Class", - "sms:displayName" : "NucleusIdentifier" - }, { - "@id" : "bts:Title", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Title", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Title", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ClinicalBiospecimenType", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:ConnectiveTissue" - }, { - "@id" : "bts:PeritonealFluid" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Saliva" - }, { - "@id" : "bts:TissueNOS" - }, { - "@id" : "bts:Skin" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Feces" - }, { - "@id" : "bts:UninvolvedTissueNOS" - }, { - "@id" : "bts:Plasma" - }, { - "@id" : "bts:Granulocyte" - }, { - "@id" : "bts:EmbryonicTissue" - }, { - "@id" : "bts:BuccalMucosa" - }, { - "@id" : "bts:Blood" - }, { - "@id" : "bts:MuscleTissue" - }, { - "@id" : "bts:CerebrospinalFluid" - }, { - "@id" : "bts:SoftTissue" - }, { - "@id" : "bts:Urine" - }, { - "@id" : "bts:PleuralFluid" - }, { - "@id" : "bts:BoneMarrow" - }, { - "@id" : "bts:Serum" - }, { - "@id" : "bts:EmbryonicFluid" - }, { - "@id" : "bts:NerveTissue" - }, { - "@id" : "bts:BuffyCoat" - } ], - "rdfs:label" : "ClinicalBiospecimenType", - "rdfs:comment" : "The text term used to describe the biological material used for testing, diagnostic, treatment or research purposes. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "@type" : "rdfs:Class", - "sms:displayName" : "ClinicalBiospecimenType" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Antigen", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:CA19-9" - }, { - "@id" : "bts:CD79A" - }, { - "@id" : "bts:CD5" - }, { - "@id" : "bts:CD30" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:CD20" - }, { - "@id" : "bts:CD14" - }, { - "@id" : "bts:CD19" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:CD34" - }, { - "@id" : "bts:CCND1" - }, { - "@id" : "bts:CD25" - }, { - "@id" : "bts:HLA-DR" - }, { - "@id" : "bts:Mesothelin" - }, { - "@id" : "bts:CD10" - }, { - "@id" : "bts:CD56" - }, { - "@id" : "bts:CD3" - }, { - "@id" : "bts:NSE" - }, { - "@id" : "bts:CA-125" - }, { - "@id" : "bts:CD22" - }, { - "@id" : "bts:CD23" - }, { - "@id" : "bts:SquamousCellCarcinomaAntigen" - }, { - "@id" : "bts:CEA" - }, { - "@id" : "bts:CD33" - }, { - "@id" : "bts:CD138" - }, { - "@id" : "bts:BCL6" - }, { - "@id" : "bts:CD7" - }, { - "@id" : "bts:CD117" - }, { - "@id" : "bts:CD15" - }, { - "@id" : "bts:CD45" - } ], - "rdfs:label" : "Antigen", - "rdfs:comment" : "The text term used to describe an antigen included in molecular testing. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "@type" : "rdfs:Class", - "sms:displayName" : "Antigen" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:OncotypeRiskGroup", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Datanotavailable" - }, { - "@id" : "bts:Highrisk" - }, { - "@id" : "bts:Intermediaterisk" - }, { - "@id" : "bts:Lowrisk" - } ], - "rdfs:label" : "OncotypeRiskGroup", - "rdfs:comment" : "Text term that represents the risk group for breast cancer as determined by assessment of the Oncotype recurrence score.", - "@type" : "rdfs:Class", - "sms:displayName" : "OncotypeRiskGroup" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ModeofCancerDetection", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Datanotavailable" - }, { - "@id" : "bts:StandardofCareScreening" - }, { - "@id" : "bts:ClinicalExaminationofunrelatedcancersymptoms" - }, { - "@id" : "bts:Incidentaloma" - }, { - "@id" : "bts:IntervalCancer" - } ], - "rdfs:label" : "ModeofCancerDetection", - "rdfs:comment" : "Text term used to describe the mode of cancer detection, like standard of care screening or random detection", - "@type" : "rdfs:Class", - "sms:displayName" : "ModeofCancerDetection" - }, { - "@id" : "bts:RelationshipType", - "@type" : "rdfs:Class", - "rdfs:comment" : "The subgroup that describes the state of connectedness between members of the unit of society organized around kinship ties.", - "rdfs:label" : "RelationshipType", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "RelationshipType", - "sms:required" : "sms:false" - }, { - "@id" : "bts:FeatureReferenceId", - "@type" : "rdfs:Class", - "rdfs:comment" : "Unique ID for this feature. Must not contain whitespace, quote or comma characters. Each ID must be unique and must not collide with a gene identifier from the transcriptome [https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/feature-bc-analysis#feature-ref]", - "rdfs:label" : "FeatureReferenceId", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "FeatureReferenceId", - "sms:required" : "sms:false" - }, { - "@id" : "bts:RelationshipAgeatDiagnosis", - "@type" : "rdfs:Class", - "rdfs:comment" : "The age (in years) when the patient's relative was first diagnosed.", - "rdfs:label" : "RelationshipAgeatDiagnosis", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "RelationshipAgeatDiagnosis", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:SmokingExposure", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:No-SmokingExposure" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Yes-SmokingExposure" - } ], - "rdfs:label" : "SmokingExposure", - "rdfs:comment" : "Indicate if individual has smoking exposure", - "@type" : "rdfs:Class", - "sms:displayName" : "SmokingExposure" - }, { - "@id" : "bts:AltSampleID", - "@type" : "rdfs:Class", - "rdfs:comment" : "Additional alternative ID associated with a biosample", - "rdfs:label" : "AltSampleID", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AltSampleID", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:TestResult", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Normal" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:TestValueReported" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Overexpressed" - }, { - "@id" : "bts:Intermediate" - }, { - "@id" : "bts:NotApplicable" - }, { - "@id" : "bts:LossofExpression" - }, { - "@id" : "bts:Low" - }, { - "@id" : "bts:High" - }, { - "@id" : "bts:Equivocal" - }, { - "@id" : "bts:CopyNumberReported" - }, { - "@id" : "bts:Positive" - }, { - "@id" : "bts:Negative" - }, { - "@id" : "bts:AbnormalNOS" - } ], - "rdfs:label" : "TestResult", - "rdfs:comment" : "The text term used to describe the result of the molecular test. If the test result was a numeric value see test_value. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "@type" : "rdfs:Class", - "sms:displayName" : "TestResult" - }, { - "@id" : "bts:DMCallingTool", - "@type" : "rdfs:Class", - "rdfs:comment" : "Software used for calling differentially methylated CpG (DMC) and/or differentially methylated region (DMR)", - "rdfs:label" : "DMCallingTool", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "DMCallingTool", - "sms:required" : "sms:false" - }, { - "@id" : "bts:MedianFractionofReadsinAnnotatedcisDNAElements", - "@type" : "rdfs:Class", - "rdfs:comment" : "Median fraction of reads in annotated cis-DNA elements (FRIADE)", - "rdfs:label" : "MedianFractionofReadsinAnnotatedcisDNAElements", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "MedianFractionofReadsinAnnotatedcisDNAElements", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Zygosity", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Heterozygous" - }, { - "@id" : "bts:Hemizygous" - }, { - "@id" : "bts:Homozygous" - }, { - "@id" : "bts:Nullizygous" - } ], - "rdfs:label" : "Zygosity", - "rdfs:comment" : "The text term used to describe the zygosity of a specific genetic variant.", - "@type" : "rdfs:Class", - "sms:displayName" : "Zygosity" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:BreastImagingPerformedType", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Datanotavailable" - }, { - "@id" : "bts:Mammogram" - }, { - "@id" : "bts:Ultrasound" - }, { - "@id" : "bts:MRI" - }, { - "@id" : "bts:PET/CT" - }, { - "@id" : "bts:CT" - }, { - "@id" : "bts:Multipleimagingmodalities" - } ], - "rdfs:label" : "BreastImagingPerformedType", - "rdfs:comment" : "The kind of technology or method performed for screening, diagnosis, surgical procedures or therapy that aids in the visualization of the breast(s).", - "@type" : "rdfs:Class", - "sms:displayName" : "BreastImagingPerformedType" - }, { - "@id" : "bts:PackYearsSmoked", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric computed value to represent lifetime tobacco exposure defined as number of cigarettes smoked per day x number of years smoked divided by 20.", - "rdfs:label" : "PackYearsSmoked", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PackYearsSmoked", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TobaccoUseperDay", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric value that represents the number of times the patient uses tobacco each day.", - "rdfs:label" : "TobaccoUseperDay", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TobaccoUseperDay", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TechnicalReplicateGroup", - "@type" : "rdfs:Class", - "rdfs:comment" : "A common term for all files belonging to the same cell or library. Provide a numbering of each library prep batch (can differ from encapsulation and sequencing batch)", - "rdfs:label" : "TechnicalReplicateGroup", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TechnicalReplicateGroup", - "sms:required" : "sms:false" - }, { - "@id" : "bts:Dilution", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Dilution", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Dilution", - "sms:required" : "sms:false" - }, { - "@id" : "bts:FOVY", - "@type" : "rdfs:Class", - "rdfs:comment" : "Field of view Y dimension. Floating point value", - "rdfs:label" : "FOVY", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "FOVY", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:SiteofResectionorBiopsy", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Tonsillarfossa" - }, { - "@id" : "bts:Overlappinglesionoflung" - }, { - "@id" : "bts:Overlappinglesionofotherandunspecifiedpartsofmouth" - }, { - "@id" : "bts:Endometrium" - }, { - "@id" : "bts:BoneoflimbNOS" - }, { - "@id" : "bts:Posteriorwallofnasopharynx" - }, { - "@id" : "bts:SmallintestineNOS" - }, { - "@id" : "bts:Anteriorwallofnasopharynx" - }, { - "@id" : "bts:Thoracicesophagus" - }, { - "@id" : "bts:Parietallobe" - }, { - "@id" : "bts:HeadfaceorneckNOS" - }, { - "@id" : "bts:Endocervix" - }, { - "@id" : "bts:Supraglottis" - }, { - "@id" : "bts:Ethmoidsinus" - }, { - "@id" : "bts:Ileum" - }, { - "@id" : "bts:Overlappinglesionofheartmediastinumandpleura" - }, { - "@id" : "bts:Exocervix" - }, { - "@id" : "bts:PancreasNOS" - }, { - "@id" : "bts:Epididymis" - }, { - "@id" : "bts:KidneyNOS" - }, { - "@id" : "bts:AnusNOS" - }, { - "@id" : "bts:Cerebrum" - }, { - "@id" : "bts:Overlappinglesionofbreast" - }, { - "@id" : "bts:Overlappinglesionofperipheralnervesandautonomicnervoussystem" - }, { - "@id" : "bts:Fundusofstomach" - }, { - "@id" : "bts:OropharynxNOS" - }, { - "@id" : "bts:Urachus" - }, { - "@id" : "bts:Labiummajus" - }, { - "@id" : "bts:Parametrium" - }, { - "@id" : "bts:Vestibuleofmouth" - }, { - "@id" : "bts:Lowerthirdofesophagus" - }, { - "@id" : "bts:Overlappinglesionofdigestivesystem" - }, { - "@id" : "bts:Bonesofskullandfaceandassociatedjoints" - }, { - "@id" : "bts:Lymphnodesofaxillaorarm" - }, { - "@id" : "bts:SoftpalateNOS" - }, { - "@id" : "bts:Hepaticflexureofcolon" - }, { - "@id" : "bts:Subglottis" - }, { - "@id" : "bts:Overlappinglesionoflip" - }, { - "@id" : "bts:Extrahepaticbileduct" - }, { - "@id" : "bts:Vallecula" - }, { - "@id" : "bts:TongueNOS" - }, { - "@id" : "bts:Liver" - }, { - "@id" : "bts:Overlappinglesionofbonesjointsandarticularcartilage" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Peripheralnervesandautonomicnervoussystemofupperlimbandshoulder" - }, { - "@id" : "bts:Lymphnodesofmultipleregions" - }, { - "@id" : "bts:Duodenum" - }, { - "@id" : "bts:Maxillarysinus" - }, { - "@id" : "bts:Intrahepaticbileduct" - }, { - "@id" : "bts:Lateralwallofbladder" - }, { - "@id" : "bts:Overlappinglesionofhypopharynx" - }, { - "@id" : "bts:Overlappinglesionofrectumanusandanalcanal" - }, { - "@id" : "bts:Middlethirdofesophagus" - }, { - "@id" : "bts:Lateralfloorofmouth" - }, { - "@id" : "bts:Anteriormediastinum" - }, { - "@id" : "bts:Anteriorfloorofmouth" - }, { - "@id" : "bts:NervoussystemNOS" - }, { - "@id" : "bts:Waldeyerring" - }, { - "@id" : "bts:Ribsternumclavicleandassociatedjoints" - }, { - "@id" : "bts:Longbonesoflowerlimbandassociatedjoints" - }, { - "@id" : "bts:Frontalsinus" - }, { - "@id" : "bts:Uterineadnexa" - }, { - "@id" : "bts:Trachea" - }, { - "@id" : "bts:RectumNOS" - }, { - "@id" : "bts:AdrenalglandNOS" - }, { - "@id" : "bts:PleuraNOS" - }, { - "@id" : "bts:LowerlimbNOS" - }, { - "@id" : "bts:Transversecolon" - }, { - "@id" : "bts:Lymphnodesofheadfaceandneck" - }, { - "@id" : "bts:GreatercurvatureofstomachNOS" - }, { - "@id" : "bts:UpperrespiratorytractNOS" - }, { - "@id" : "bts:Overlappinglesionofpancreas" - }, { - "@id" : "bts:CerebellumNOS" - }, { - "@id" : "bts:Overlappinglesionsoforopharynx" - }, { - "@id" : "bts:Axillarytailofbreast" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:VulvaNOS" - }, { - "@id" : "bts:FloorofmouthNOS" - }, { - "@id" : "bts:Overlappinglesionofmalegenitalorgans" - }, { - "@id" : "bts:UterusNOS" - }, { - "@id" : "bts:Bodyofstomach" - }, { - "@id" : "bts:Urethra" - }, { - "@id" : "bts:Middlelobelung" - }, { - "@id" : "bts:Tailofpancreas" - }, { - "@id" : "bts:Pinealgland" - }, { - "@id" : "bts:Spermaticcord" - }, { - "@id" : "bts:Carotidbody" - }, { - "@id" : "bts:ReticuloendothelialsystemNOS" - }, { - "@id" : "bts:Otherspecifiedpartsofpancreas" - }, { - "@id" : "bts:Externalear" - }, { - "@id" : "bts:Meckeldiverticulum" - }, { - "@id" : "bts:PenisNOS" - }, { - "@id" : "bts:Lower-innerquadrantofbreast" - }, { - "@id" : "bts:Superiorwallofnasopharynx" - }, { - "@id" : "bts:Retina" - }, { - "@id" : "bts:Borderoftongue" - }, { - "@id" : "bts:Intra-abdominallymphnodes" - }, { - "@id" : "bts:Peripheralnervesandautonomicnervoussystemofthorax" - }, { - "@id" : "bts:Caudaequina" - }, { - "@id" : "bts:Overlappinglesionofpalate" - }, { - "@id" : "bts:NasopharynxNOS" - }, { - "@id" : "bts:Placenta" - }, { - "@id" : "bts:ExternallipNOS" - }, { - "@id" : "bts:BoneNOS" - }, { - "@id" : "bts:Ciliarybody" - }, { - "@id" : "bts:HematopoieticsystemNOS" - }, { - "@id" : "bts:Prepuce" - }, { - "@id" : "bts:Pelviclymphnodes" - }, { - "@id" : "bts:Postcricoidregion" - }, { - "@id" : "bts:Externalupperlip" - }, { - "@id" : "bts:Peripheralnervesandautonomicnervoussystemofpelvis" - }, { - "@id" : "bts:PelvisNOS" - }, { - "@id" : "bts:Connectivesubcutaneousandothersofttissuesofabdomen" - }, { - "@id" : "bts:Vertebralcolumn" - }, { - "@id" : "bts:Bodyofpancreas" - }, { - "@id" : "bts:Trigoneofbladder" - }, { - "@id" : "bts:Commissureoflip" - }, { - "@id" : "bts:Peripheralnervesandautonomicnervoussystemofabdomen" - }, { - "@id" : "bts:Upper-innerquadrantofbreast" - }, { - "@id" : "bts:PalateNOS" - }, { - "@id" : "bts:Hypopharyngealaspectofaryepiglotticfold" - }, { - "@id" : "bts:Uppergum" - }, { - "@id" : "bts:ThoraxNOS" - }, { - "@id" : "bts:Spinalcord" - }, { - "@id" : "bts:BrainNOS" - }, { - "@id" : "bts:MouthNOS" - }, { - "@id" : "bts:Connectivesubcutaneousandothersofttissuesofupperlimbandshoulder" - }, { - "@id" : "bts:Retroperitoneum" - }, { - "@id" : "bts:Longbonesofupperlimbscapulaandassociatedjoints" - }, { - "@id" : "bts:Hardpalate" - }, { - "@id" : "bts:Gallbladder" - }, { - "@id" : "bts:EndocrineglandNOS" - }, { - "@id" : "bts:Brainstem" - }, { - "@id" : "bts:CorneaNOS" - }, { - "@id" : "bts:Overlappinglesionofnasopharynx" - }, { - "@id" : "bts:DorsalsurfaceoftongueNOS" - }, { - "@id" : "bts:MajorsalivaryglandNOS" - }, { - "@id" : "bts:Abdominalesophagus" - }, { - "@id" : "bts:Olfactorynerve" - }, { - "@id" : "bts:Shortbonesofupperlimbandassociatedjoints" - }, { - "@id" : "bts:Overlappinglesionoftonsil" - }, { - "@id" : "bts:AutonomicnervoussystemNOS" - }, { - "@id" : "bts:Ill-definedsiteswithinrespiratorysystem" - }, { - "@id" : "bts:Lymphnodesofinguinalregionorleg" - }, { - "@id" : "bts:Overlappinglesionofmajorsalivaryglands" - }, { - "@id" : "bts:PeripheralnervesandautonomicnervoussystemoftrunkNOS" - }, { - "@id" : "bts:Fundusuteri" - }, { - "@id" : "bts:TestisNOS" - }, { - "@id" : "bts:Parotidgland" - }, { - "@id" : "bts:AmpullaofVater" - }, { - "@id" : "bts:CardiaNOS" - }, { - "@id" : "bts:SkinoflipNOS" - }, { - "@id" : "bts:Overlappinglesionofstomach" - }, { - "@id" : "bts:Rectosigmoidjunction" - }, { - "@id" : "bts:Gastricantrum" - }, { - "@id" : "bts:Cortexofadrenalgland" - }, { - "@id" : "bts:Renalpelvis" - }, { - "@id" : "bts:Middleear" - }, { - "@id" : "bts:Overlappinglesionoffemalegenitalorgans" - }, { - "@id" : "bts:GastrointestinaltractNOS" - }, { - "@id" : "bts:Connectivesubcutaneousandothersofttissuesofthorax" - }, { - "@id" : "bts:SkinNOS" - }, { - "@id" : "bts:Parathyroidgland" - }, { - "@id" : "bts:Pituitarygland" - }, { - "@id" : "bts:Overlappinglesionoftongue" - }, { - "@id" : "bts:LungNOS" - }, { - "@id" : "bts:Cervixuteri" - }, { - "@id" : "bts:Skinofotherandunspecifiedpartsofface" - }, { - "@id" : "bts:Submandibulargland" - }, { - "@id" : "bts:Clitoris" - }, { - "@id" : "bts:Centralportionofbreast" - }, { - "@id" : "bts:Ovary" - }, { - "@id" : "bts:Lateralwalloforopharynx" - }, { - "@id" : "bts:StomachNOS" - }, { - "@id" : "bts:VentralsurfaceoftongueNOS" - }, { - "@id" : "bts:Overlappinglesionofurinaryorgans" - }, { - "@id" : "bts:Sigmoidcolon" - }, { - "@id" : "bts:Overlappinglesionofbrain" - }, { - "@id" : "bts:Overlappinglesionofcolon" - }, { - "@id" : "bts:Glanspenis" - }, { - "@id" : "bts:MediastinumNOS" - }, { - "@id" : "bts:VaginaNOS" - }, { - "@id" : "bts:Lower-outerquadrantofbreast" - }, { - "@id" : "bts:PharynxNOS" - }, { - "@id" : "bts:IntestinaltractNOS" - }, { - "@id" : "bts:Peripheralnervesandautonomicnervoussystemofheadfaceandneck" - }, { - "@id" : "bts:Overlappinglesionofbladder" - }, { - "@id" : "bts:Pyriformsinus" - }, { - "@id" : "bts:Conjunctiva" - }, { - "@id" : "bts:ConnectivesubcutaneousandothersofttissuesNOS" - }, { - "@id" : "bts:Acousticnerve" - }, { - "@id" : "bts:LessercurvatureofstomachNOS" - }, { - "@id" : "bts:Mucosaoflowerlip" - }, { - "@id" : "bts:BladderNOS" - }, { - "@id" : "bts:Intrathoraciclymphnodes" - }, { - "@id" : "bts:Pylorus" - }, { - "@id" : "bts:Blood" - }, { - "@id" : "bts:BiliarytractNOS" - }, { - "@id" : "bts:AccessorysinusNOS" - }, { - "@id" : "bts:Mandible" - }, { - "@id" : "bts:Overlappinglesionofretroperitoneumandperitoneum" - 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Note that more direct height/weight information are preferred, if available.", - "rdfs:label" : "BMI", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BMI", - "sms:required" : "sms:false" - }, { - "@id" : "bts:EmptyWellBarcode", - "@type" : "rdfs:Class", - "rdfs:comment" : "Unique cell barcode assigned to empty cells used as controls in CEL-seq2 assays.", - "rdfs:label" : "EmptyWellBarcode", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "EmptyWellBarcode", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BreastCarcinomaHER2RatioDiagnosis", - "@type" : "rdfs:Class", - "rdfs:comment" : "HER2 ratio of the participant at diagnosis", - "rdfs:label" : "BreastCarcinomaHER2RatioDiagnosis", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BreastCarcinomaHER2RatioDiagnosis", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TimebetweenWakingandFirstSmoke", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "TimebetweenWakingandFirstSmoke", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TimebetweenWakingandFirstSmoke", - "sms:required" : "sms:false" - }, { - "@id" : "bts:MedianPercentageofMitochondrialReadsperNucleus", - "@type" : "rdfs:Class", - "rdfs:comment" : "Contamination from mitochondrial sequences", - "rdfs:label" : "MedianPercentageofMitochondrialReadsperNucleus", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "MedianPercentageofMitochondrialReadsperNucleus", - "sms:required" : "sms:false" - }, { - "@id" : "bts:PhysicalSizeZ", - "@type" : "rdfs:Class", - "rdfs:comment" : "Physical size (Z-dimension) of a pixel. 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}, { - "@id" : "bts:Chroniclymphocyticleukemia" - }, { - "@id" : "bts:Liposarcomawelldifferentiated" - }, { - "@id" : "bts:Undifferentiatedpleomorphicsarcoma" - }, { - "@id" : "bts:Secretorycarcinomaofbreast" - }, { - "@id" : "bts:Lobularcarcinomanoninfiltrating" - }, { - "@id" : "bts:Mixedadenocarcinomaandsquamouscellcarcinoma" - }, { - "@id" : "bts:Melanoticneurofibroma" - }, { - "@id" : "bts:ChronicgranulocyticleukemiaPhiladelphiachromosome(Ph1)positive" - }, { - "@id" : "bts:Hepatocellularadenoma" - }, { - "@id" : "bts:BurkittlymphomaNOS(Includesallvariants)" - }, { - "@id" : "bts:ParagangliomaNOS" - }, { - "@id" : "bts:DiffuselargeB-celllymphomaNOS" - }, { - "@id" : "bts:NevusNOS" - }, { - "@id" : "bts:Hepatoidcarcinoma" - }, { - "@id" : "bts:MixedtumormalignantNOS" - }, { - "@id" : "bts:Rhabdoidsarcoma" - }, { - "@id" : "bts:Tubulolobularcarcinoma" - }, { - "@id" : "bts:Papillomatosisglandular" - }, { - "@id" : "bts:Bronchialadenomacarcinoid" - }, { - "@id" : "bts:Tumorembolus" - }, { - "@id" : "bts:DuctcarcinomaNOS" - }, { - "@id" : "bts:RhabdomyosarcomaNOS" - }, { - "@id" : "bts:LobularcarcinomaNOS" - }, { - "@id" : "bts:Bronchialadenomacylindroid" - }, { - "@id" : "bts:EpidermoidcarcinomaNOS" - }, { - "@id" : "bts:Papillaryglioneuronaltumor" - }, { - "@id" : "bts:DuctalcarcinomainsituNOS" - }, { - "@id" : "bts:Unclassifiedtumormalignantuncertainwhetherprimaryormetastatic" - }, { - "@id" : "bts:Glioblastoma" - }, { - "@id" : "bts:Papillaryandfollicularcarcinoma" - }, { - "@id" : "bts:DuctalcarcinomaNOS" - }, { - "@id" : "bts:Tumorbenign" - }, { - "@id" : "bts:Pagetdiseasemammary" - }, { - "@id" : "bts:Diffuseastrocytomalowgrade" - }, { - "@id" : "bts:Ductcellcarcinoma" - }, { - "@id" : "bts:Preleukemicsyndrome" - }, { - "@id" : "bts:Carcinomadiffusetype" - }, { - "@id" : "bts:Neurosarcoma" - }, { - "@id" : "bts:PapillomatosisNOS" - }, { - "@id" : "bts:Therapyrelatedmyeloidneoplasm" - }, { - "@id" : "bts:Renalcarcinomacollectingducttype" - }, { - "@id" : "bts:NeurofibromaNOS" - }, { - "@id" : "bts:Meningiomaanaplastic" - }, { - "@id" : "bts:CementomaNOS" - }, { - "@id" : "bts:DermatofibromaNOS" - }, { - "@id" : "bts:AstrocytomaNOS" - }, { - "@id" : "bts:Livercelladenoma" - }, { - "@id" : "bts:TubulovillousadenomaNOS" - }, { - "@id" : "bts:MelanomaNOS" - }, { - "@id" : "bts:PapillomaNOS" - }, { - "@id" : "bts:Esophagealglandulardysplasia(intraepithelialneoplasia)highgrade" - }, { - "@id" : "bts:Tumorcellsmalignant" - }, { - "@id" : "bts:MalignantlymphomadiffuseNOS" - }, { - "@id" : "bts:Renalcellcarcinomachromophobetype" - }, { - "@id" : "bts:Tubularcarcinoid" - }, { - "@id" : "bts:Nonpigmentednevus" - }, { - "@id" : "bts:Rodentulcer" - }, { - "@id" : "bts:HodgkindiseaseNOS" - }, { - "@id" : "bts:Acinarcellcarcinoma" - }, { - "@id" : "bts:Papillaryadenofibroma" - }, { - "@id" : "bts:Oatcellcarcinoma" - }, { - "@id" : "bts:Adenocarcinomainadenomatouspolyp" - }, { - "@id" : "bts:SpindlecellcarcinomaNOS" - }, { - "@id" : "bts:Adenocarcinomainpolypoidadenoma" - }, { - "@id" : "bts:Papillaryserousadenocarcinoma" - }, { - "@id" : "bts:SplenicdiffuseredpulpsmallB-celllymphoma" - }, { - "@id" : "bts:ChondromaNOS" - }, { - "@id" : "bts:Bileductadenoma" - }, { - "@id" : "bts:Adenocarcinomainvillousadenoma" - }, { - "@id" : "bts:SpindlecellmelanomaNOS" - }, { - "@id" : "bts:ClassicalHodgkinlymphomamixedcellularityNOS" - }, { - "@id" : "bts:Combinedsmallcell-largecarcinoma" - }, { - "@id" : "bts:Eosinophilcarcinoma" - }, { - "@id" : "bts:PancreaticendocrinetumorNOS" - }, { - "@id" : "bts:AdenocarcinomaNOS" - }, { - "@id" : "bts:SarcomaNOS" - }, { - "@id" : "bts:ChronicmyelocyticleukemiaNOS" - }, { - "@id" : "bts:Adenocarcinomainsitunon-mucinous" - }, { - "@id" : "bts:ChronicleukemiaNOS" - }, { - "@id" : "bts:Pro-TALL" - }, { - "@id" : "bts:Esophagealglandulardysplasia(intraepithelialneoplasia)lowgrade" - }, { - "@id" : "bts:Lymphoblastoma" - }, { - "@id" : "bts:Mixedmedullary-papillarycarcinoma" - }, { - "@id" : "bts:ClassicalHodgkinlymphomanodularsclerosisNOS" - }, { - "@id" : "bts:OsteoblastomaNOS" - }, { - "@id" : "bts:CerebellarsarcomaNOS" - }, { - "@id" : "bts:Paragangliomabenign" - }, { - "@id" : "bts:Intraductaltubular-papillaryneoplasmlowgrade" - }, { - "@id" : "bts:Familialadenomatouspolyposis" - }, { - "@id" : "bts:Mixedsquamouscellandglandularpapilloma" - }, { - "@id" : "bts:IntraductalcarcinomaNOS" - }, { - "@id" : "bts:Transitionalcarcinoma" - }, { - "@id" : "bts:Gastrinomamalignant" - }, { - "@id" : "bts:Melanocytomaeyeball" - }, { - "@id" : "bts:Mixedmedullary-follicularcarcinoma" - }, { - "@id" : "bts:ChronicmyelogenousleukemiaBCR-ABLpositive" - }, { - "@id" : "bts:Basophilcarcinoma" - }, { - "@id" : "bts:NeuroepitheliomaNOS" - }, { - "@id" : "bts:Adenocarcinomapancreatobiliarytype" - }, { - "@id" : "bts:PrecancerousmelanosisNOS" - }, { - "@id" : "bts:Undifferentiatedroundcellsarcoma" - }, { - "@id" : "bts:MalignantlymphomalargecellNOS" - }, { - "@id" : "bts:Tubulo-papillaryadenoma" - }, { - "@id" : "bts:ClassicalHodgkinlymphomalymphocytedepletiondiffusefibrosis" - }, { - "@id" : "bts:Cerebellarliponeurocytoma" - }, { - "@id" : "bts:Pulmonaryblastoma" - }, { - "@id" : "bts:Burkitt-likelymphoma" - }, { - "@id" : "bts:GangliogliomaNOS" - }, { - "@id" : "bts:T-celllymphomaNOS" - }, { - "@id" : "bts:Papillarytumorofthepinealregion" - }, { - "@id" : "bts:IntraductalpapillaryadenocarcinomaNOS" - }, { - "@id" : "bts:MalignantlymphomaNOS" - }, { - "@id" : "bts:Hepatoidadenocarcinoma" - }, { - "@id" : "bts:PapillaryadenomaNOS" - }, { - "@id" : "bts:Carcinomainsituinadenomatouspolyp" - }, { - "@id" : "bts:Eosinophilicgranuloma" - }, { - "@id" : "bts:Medullaryadenocarcinoma" - }, { - "@id" : "bts:Malignantlymphomamixedcelltypenodular" - }, { - "@id" : "bts:IntraductalcarcinomanoninfiltratingNOS" - }, { - "@id" : "bts:Interstitialcelltumormalignant" - }, { - "@id" : "bts:LymphomaNOS" - }, { - "@id" : "bts:Unclassifiedtumorborderlinemalignancy" - }, { - "@id" : "bts:Adenocarcinomaintubularadenoma" - }, { - "@id" : "bts:Intraductalpapillarycarcinoma" - }, { - "@id" : "bts:MyelocyticleukemiaNOS" - }, { - "@id" : "bts:TumorcellsNOS" - }, { - "@id" : "bts:LiposarcomaNOS" - }, { - "@id" : "bts:Interstitialcelltumorbenign" - }, { - "@id" : "bts:Neoplasmmetastatic" - }, { - "@id" : "bts:Chronicneutrophilicleukemia" - }, { - "@id" : "bts:Bronchiolo-alveolarcarcinomagobletcelltype" - }, { - "@id" : "bts:Papillaryadenocarcinomafollicularvariant" - }, { - "@id" : "bts:Hepatocarcinoma" - }, { - "@id" : "bts:Undifferentiateduterinesarcoma" - }, { - "@id" : "bts:Renalcellcarcinomaunclassified" - }, { - "@id" : "bts:Papillaryepidermoidcarcinoma" - }, { - "@id" : "bts:PigmentednevusNOS" - }, { - "@id" : "bts:MyeloidleukemiaNOS" - }, { - "@id" : "bts:Esophagealsquamousintraepithelialneoplasia(dysplasia)highgrade" - }, { - "@id" : "bts:MalignantlymphomalargeB-cellNOS" - }, { - "@id" : "bts:Non-lymphocyticleukemiaNOS" - }, { - "@id" : "bts:Basalcelladenocarcinoma" - }, { - "@id" : "bts:AdultT-celllymphoma/leukemia" - }, { - "@id" : "bts:Mixedpancreaticendocrineandexocrinetumormalignant" - }, { - "@id" : "bts:EpendymomaNOS" - }, { - "@id" : "bts:PeripheralT-celllymphomaNOS" - }, { - "@id" : "bts:Pulmonaryadenomatosis" - }, { - "@id" : "bts:Pleomorphiclobularcarcinoma" - }, { - "@id" : "bts:Pagetdiseaseofbreast" - }, { - "@id" : "bts:HodgkinparagranulomaNOS" - }, { - "@id" : "bts:MalignantmelanomaNOS" - }, { - "@id" : "bts:Papillarytransitionalcellcarcinoma" - }, { - "@id" : "bts:Acutelymphocyticleukemia" - }, { - "@id" : "bts:Seroussurfacepapillarycarcinoma" - }, { - "@id" : "bts:Basalcelltumor" - }, { - "@id" : "bts:ChronicmyelomonocyticleukemiaNOS" - }, { - "@id" : "bts:LymphaticleukemicNOS" - }, { - "@id" : "bts:TeratomaNOS" - }, { - "@id" : "bts:Malignantlymphomamixedcelltypefollicular" - }, { - "@id" : "bts:Bronchiolaradenocarcinoma" - }, { - "@id" : "bts:Basophiladenocarcinoma" - }, { - "@id" : "bts:Non-HodgkinlymphomaNOS" - }, { - "@id" : "bts:Haemangioblastoma" - }, { - "@id" : "bts:Intraductaltubular-papillaryneoplasmhighgrade" - }, { - "@id" : "bts:ChronicmyeloproliferativediseaseNOS" - }, { - "@id" : "bts:Rhabdoidmeningioma" - }, { - "@id" : "bts:RhabdoidtumorNOS" - }, { - "@id" : "bts:Carcinomaintestinaltype" - }, { - "@id" : "bts:ClassicalHodgkinlymphomalymphocytedepletionNOS" - }, { - "@id" : "bts:ChronicmyeloidleukemiaNOS" - }, { - "@id" : "bts:Melanoticmedulloblastoma" - }, { - "@id" : "bts:Melanoticneuroectodermaltumor" - }, { - "@id" : "bts:LobularcarcinomainsituNOS" - }, { - "@id" : "bts:Mixedsmallcellcarcinoma" - }, { - "@id" : "bts:Intradermalnevus" - }, { - "@id" : "bts:Bronchiolo-alveolarcarcinomaClaracell" - }, { - "@id" : "bts:Papillarysquamouscellcarcinomainsitu" - }, { - "@id" : "bts:Smallcellneuroendocrinecarcinoma" - }, { - "@id" : "bts:Malignantmelanomainprecancerousmelanosis" - }, { - "@id" : "bts:CarcinomaanaplasticNOS" - }, { - "@id" : "bts:Dysplasticnevus" - }, { - "@id" : "bts:Liposarcomadifferentiated" - }, { - "@id" : "bts:Combinedsmallcell-squamouscellcarcinoma" - }, { - "@id" : "bts:Acutelymphaticleukemia" - }, { - "@id" : "bts:Gliomamalignant" - }, { - "@id" : "bts:AdenocarcinomainsituNOS" - }, { - "@id" : "bts:Mucosal-associatedlymphoidtissuelymphoma" - }, { - "@id" : "bts:Spleniclymphomawithvillouslymphocytes" - }, { - "@id" : "bts:LargecellcarcinomaNOS" - }, { - "@id" : "bts:MicropapillarycarcinomaNOS" - }, { - "@id" : "bts:Undifferentiatedspindlecellsarcoma" - }, { - "@id" : "bts:IntraepidermalsquamouscellcarcinomaBowentype" - }, { - "@id" : "bts:EndometrioidadenofibromaNOS" - }, { - "@id" : "bts:MedullarycarcinomaNOS" - }, { - "@id" : "bts:T-celllargegranularlymphocytosis" - }, { - "@id" : "bts:IntraductaladenocarcinomanoninfiltratingNOS" - }, { - "@id" : "bts:OsteosarcomaNOS" - }, { - "@id" : "bts:Pancreatobiliary-typecarcinoma" - }, { - "@id" : "bts:Adenocarcinoidtumor" - }, { - "@id" : "bts:DiffuseastrocytomaIDH-mutant" - }, { - "@id" : "bts:Medullaryosteosarcoma" - }, { - "@id" : "bts:Adenocarcinomaintestinaltype" - }, { - "@id" : "bts:CarcinomainsituinapolypNOS" - }, { - "@id" : "bts:CarcinosarcomaNOS" - }, { - "@id" : "bts:Basalcelladenoma" - }, { - "@id" : "bts:AdultT-celllymphoma" - }, { - "@id" : "bts:Lobularadenocarcinoma" - }, { - "@id" : "bts:Melanocyticnevus" - }, { - "@id" : "bts:AdenocarcinomametastaticNOS" - }, { - "@id" : "bts:Pigmentedbasalcellcarcinoma" - }, { - "@id" : "bts:Astrocytomaanaplastic" - }, { - "@id" : "bts:Melanomamalignantofsoftparts" - }, { - "@id" : "bts:Smallcellosteosarcoma" - }, { - "@id" : "bts:Unclassifiedtumoruncertainwhetherbenignormalignant" - }, { - "@id" : "bts:Transitionalcellcarcinoma" - }, { - "@id" : "bts:Intraductalcarcinomaandlobularcarcinomainsitu" - }, { - "@id" : "bts:RhabdomyomaNOS" - }, { - "@id" : "bts:B-celllymphocyticleukemia/smalllymphocyticlymphoma" - }, { - "@id" : "bts:Capillaryhemangioma" - }, { - "@id" : "bts:PrecursorB-celllymphoblasticleukemia" - }, { - "@id" : "bts:Bronchiolo-alveolarcarcinomaClaracellandgobletcelltype" - }, { - "@id" : "bts:Eosinophiladenoma" - }, { - "@id" : "bts:SplenicB-celllymphoma/leukemiaunclassifiable" - }, { - "@id" : "bts:CompositeHodgkinandnon-Hodgkinlymphoma" - }, { - "@id" : "bts:Pagetdiseaseandinfiltratingductcarcinomaofbreast" - }, { - "@id" : "bts:NeurofibromatosisNOS" - }, { - "@id" : "bts:HodgkinlymphomaNOS" - }, { - "@id" : "bts:Melanomainsitu" - }, { - "@id" : "bts:SerouscystadenocarcinomaNOS" - }, { - "@id" : "bts:MalignantlymphomaHodgkin" - }, { - "@id" : "bts:Acutelymphoblasticleukemia-lymphomaNOS" - }, { - "@id" : "bts:Unclassifiedtumormalignant" - }, { - "@id" : "bts:Adultrhabdomyoma" - }, { - "@id" : "bts:Neoplasmuncertainwhetherbenignormalignant" - }, { - "@id" : "bts:ChronicmyelomonocyticleukemiaType1" - }, { - "@id" : "bts:DuctadenomaNOS" - }, { - "@id" : "bts:Neoplasmbenign" - }, { - "@id" : "bts:CarcinomaundifferentiatedNOS" - }, { - "@id" : "bts:Malignancy" - }, { - "@id" : "bts:Adenocarcinomainsitumucinous" - }, { - "@id" : "bts:Papillarysquamouscellcarcinoma" - }, { - "@id" : "bts:Blymphoblasticleukemia/lymphomawithhyperdiploidy" - }, { - "@id" : "bts:PrecursorT-celllymphoblasticleukemia" - }, { - "@id" : "bts:Tumorsecondary" - }, { - "@id" : "bts:Pancreatobiliaryneoplasmnon-invasive" - }, { - "@id" : "bts:Malignantmelanomaingiantpigmentednevus" - }, { - "@id" : "bts:Squamouscellcarcinomaadenoid" - }, { - "@id" : "bts:Acutemyelomonocyticleukemia" - }, { - "@id" : "bts:Bileductcystadenocarcinoma" - }, { - "@id" : "bts:Pancreaticendocrinetumornonfunctioning" - }, { - "@id" : "bts:Pleomorphicadenoma" - }, { - "@id" : "bts:Blymphoblasticleukemia/lymphomawithhypodiploidy(HypodiploidALL)" - }, { - "@id" : "bts:Renalcellcarcinomasarcomatoid" - }, { - "@id" : "bts:SplenicmarginalzoneB-celllymphoma" - }, { - "@id" : "bts:MalignantlymphomalargeB-celldiffuseNOS" - }, { - "@id" : "bts:Infiltratingductandcolloidcarcinoma" - }, { - "@id" : "bts:ChronicmyelomonocyticleukemiaTypeII" - }, { - "@id" : "bts:DuctadenocarcinomaNOS" - }, { - "@id" : "bts:Combined/mixedcarcinoidandadenocarcinoma" - }, { - "@id" : "bts:Haemangiosarcoma" - }, { - "@id" : "bts:Acutelymphoidleukemia" - }, { - "@id" : "bts:DiffuseastrocytomaIDH-wildtype" - }, { - "@id" : "bts:Intraductaltubulopapillaryneoplasm" - }, { - "@id" : "bts:Acutebasophilicleukaemia" - }, { - "@id" : "bts:Unclassifiedtumorbenign" - }, { - "@id" : "bts:Intraductalmicropapillarycarcinoma" - }, { - "@id" : "bts:Hodgkingranuloma" - }, { - "@id" : "bts:ChroniclymphocyticleukemiaB-celltype(includesallvariantsofBCLL)" - }, { - "@id" : "bts:Pancreatoblastoma" - }, { - "@id" : "bts:Bileductadenocarcinoma" - }, { - "@id" : "bts:Meningealmelanocytoma" - }, { - "@id" : "bts:HodgkinlymphomamixedcellularityNOS" - }, { - "@id" : "bts:InfiltratingductcarcinomaNOS" - }, { - "@id" : "bts:Esophagealsquamousintraepithelialneoplasia(dysplasia)lowgrade" - }, { - "@id" : "bts:SmallcellcarcinomaNOS" - }, { - "@id" : "bts:Inflammatorycarcinoma" - }, { - "@id" : "bts:Papillaryurothelialcarcinoma" - }, { - "@id" : "bts:Melanoticprogonoma" - }, { - "@id" : "bts:Centralneuroblastoma" - }, { - "@id" : "bts:MalignantlymphomalymphocyticNOS" - }, { - "@id" : "bts:MyelomaNOS" - }, { - "@id" : "bts:Adenocarcinomaendocervicaltype" - }, { - "@id" : "bts:AdenocarcinomainsituinapolypNOS" - }, { - "@id" : "bts:Neoplasmmalignantuncertainwhetherprimaryormetastatic" - }, { - "@id" : "bts:Pulmonaryarteryintimalsarcoma" - }, { - "@id" : "bts:IntraepidermalcarcinomaNOS" - }, { - "@id" : "bts:PapillaryserouscystadenomaNOS" - }, { - "@id" : "bts:CarcinomainsituNOS" - }, { - "@id" : "bts:TubularadenomaNOS" - }, { - "@id" : "bts:Tubulopapillaryadenocarcinoma" - }, { - "@id" : "bts:Pancreaticmicroadenoma" - }, { - "@id" : "bts:AcutelymphoblasticleukemiamatureB-celltype" - }, { - "@id" : "bts:c-ALL" - }, { - "@id" : "bts:AcuteleukemiaBurkitttype" - }, { - "@id" : "bts:Cervicalintraepithelialneoplasialowgrade" - }, { - "@id" : "bts:MixedtumorNOS" - }, { - "@id" : "bts:Bronchiolo-alveolaradenocarcinomaNOS" - }, { - "@id" : "bts:Myoepithelioma" - }, { - "@id" : "bts:Pancreaticendocrinetumormalignant" - }, { - "@id" : "bts:EndometrioidadenocarcinomaNOS" - }, { - "@id" : "bts:InfiltratingbasalcellcarcinomaNOS" - }, { - "@id" : "bts:PrecursorB-celllymphoblasticlymphoma" - }, { - "@id" : "bts:Pleomorphiclobularcarcinomainsitu" - }, { - "@id" : "bts:Mucousadenocarcinoma" - }, { - "@id" : "bts:Meningealmelanoma" - }, { - "@id" : "bts:Acutemyeloidleukemiaminimaldifferentiation" - }, { - "@id" : "bts:LymphoblasticleukemiaNOS" - }, { - "@id" : "bts:MelanoticMPNST" - }, { - "@id" : "bts:Astrocytomalowgrade" - }, { - "@id" : "bts:Multiplemyeloma" - }, { - "@id" : "bts:Papillaryrenalcellcarcinoma" - }, { - "@id" : "bts:MedulloblastomaNOS" - }, { - "@id" : "bts:AdenocarcinomainapolypNOS" - }, { - "@id" : "bts:Combinedsmallcellcarcinoma" - }, { - "@id" : "bts:Bileductcarcinoma" - }, { - "@id" : "bts:ChronicgranulocyticleukemiaNOS" - }, { - "@id" : "bts:Juvenilemyelomonocyticleukemia" - }, { - "@id" : "bts:NeoplasmNOS" - }, { - "@id" : "bts:Capillarylymphangioma" - }, { - "@id" : "bts:Malignantlymphomamixedcelltypediffuse" - }, { - "@id" : "bts:Neoplasmmalignant" - }, { - "@id" : "bts:Papillarymeningioma" - }, { - "@id" : "bts:Bileductcystadenoma" - }, { - "@id" : "bts:Malignantmelanomaincongenitalmelanocyticnevus" - 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"@id" : "bts:LiquidNitrogen" - }, { - "@id" : "bts:DryIce" - }, { - "@id" : "bts:AmbientPack" - }, { - "@id" : "bts:ColdPack" - }, { - "@id" : "bts:IcePack" - }, { - "@id" : "bts:SpecimenatRoomTemperature" - }, { - "@id" : "bts:OtherShippingEnvironment" - }, { - "@id" : "bts:NotShipped" - } ], - "rdfs:label" : "ShippingConditionType", - "rdfs:comment" : "Text descriptor of the shipping environment of a biospecimen.", - "@type" : "rdfs:Class", - "sms:displayName" : "ShippingConditionType" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:AntibioticUse", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:No" - }, { - "@id" : "bts:Yes-over6monthsago" - }, { - "@id" : "bts:Yes-withinlast1-6months" - }, { - "@id" : "bts:Yes-withinlastmonthh" - }, { - "@id" : "bts:Unknown" - } ], - "rdfs:label" : "AntibioticUse", - "rdfs:comment" : "Antibiotic use", - "@type" : "rdfs:Class", - "sms:displayName" : "AntibioticUse" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ERStatus", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:StronglyPositive" - }, { - "@id" : "bts:Positive" - }, { - "@id" : "bts:WeaklyPositive" - }, { - "@id" : "bts:Negative" - }, { - "@id" : "bts:Equivocal" - }, { - "@id" : "bts:Unknown" - } ], - "rdfs:label" : "ERStatus", - "rdfs:comment" : "TBD", - "@type" : "rdfs:Class", - "sms:displayName" : "ERStatus" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:MolecularConsequence", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:TFBindingSiteVariant" - }, { - "@id" : "bts:TranscriptAmplification" - }, { - "@id" : "bts:SpliceRegionVariant" - }, { - "@id" : "bts:DownstreamGeneVariant" - }, { - "@id" : "bts:5PrimeUTRVariant" - }, { - "@id" : "bts:SpliceDonorVariant" - }, { - "@id" : "bts:SpliceAcceptorVariant" - }, { - "@id" : "bts:StopGain" - }, { - "@id" : "bts:StopRetainedVariant" - }, { - "@id" : "bts:TFBSAmplification" - }, { - "@id" : "bts:3PrimeUTRVariant" - }, { - "@id" : "bts:UpstreamGeneVariant" - }, { - "@id" : "bts:IntergenicVariant" - }, { - "@id" : "bts:RegulatoryRegionAblation" - }, { - "@id" : "bts:NMDTranscriptVariant" - }, { - "@id" : "bts:TranscriptAblation" - }, { - "@id" : "bts:Non-codingTranscriptExonVariant" - }, { - "@id" : "bts:SynonymousVariant" - }, { - "@id" : "bts:RegulatoryRegionVariant" - }, { - "@id" : "bts:StopLost" - }, { - "@id" : "bts:MaturemiRNAVariant" - }, { - "@id" : "bts:InframeInsertion" - }, { - "@id" : "bts:InframeDeletion" - }, { - "@id" : "bts:ProteinAlteringVariant" - }, { - "@id" : "bts:IncompleteTerminalCodonVariant" - }, { - "@id" : "bts:TFBSAblation" - }, { - "@id" : "bts:IntronVariant" - }, { - "@id" : "bts:CodingSequenceVariant" - }, { - "@id" : "bts:MissenseVariant" - }, { - "@id" : "bts:FrameshiftVariant" - }, { - "@id" : "bts:Non-codingTranscriptVariant" - }, { - "@id" : "bts:FeatureTruncation" - }, { - "@id" : "bts:RegulatoryRegionAmplification" - }, { - "@id" : "bts:StartLost" - }, { - "@id" : "bts:FeatureElongation" - } ], - "rdfs:label" : "MolecularConsequence", - "rdfs:comment" : "The text term used to describe the molecular consequence of genetic variation. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "@type" : "rdfs:Class", - "sms:displayName" : "MolecularConsequence" - }, { - "@id" : "bts:SampleCollectionYear", - "@type" : "rdfs:Class", - "rdfs:comment" : "Year the sample was collected from the individual.", - "rdfs:label" : "SampleCollectionYear", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SampleCollectionYear", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:WorkingDistanceUnit", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:cm" - }, { - "@id" : "bts:mm" - }, { - "@id" : "bts:µm" - }, { - "@id" : "bts:nm" - }, { - "@id" : "bts:Å" - } ], - "rdfs:label" : "WorkingDistanceUnit", - "rdfs:comment" : "The units of the working distance. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "@type" : "rdfs:Class", - "sms:displayName" : "WorkingDistanceUnit" - }, { - "@id" : "bts:PriorSitesofRadiation", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "PriorSitesofRadiation", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PriorSitesofRadiation", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:AlcoholHistory", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:No" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Yes" - }, { - "@id" : "bts:unknown" - } ], - "rdfs:label" : "AlcoholHistory", - "rdfs:comment" : "A response to a question that asks whether the participant has consumed at least 12 drinks of any kind of alcoholic beverage in their lifetime.", - "@type" : "rdfs:Class", - "sms:displayName" : "AlcoholHistory" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:AgeIsObfuscated", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:True" - }, { - "@id" : "bts:False" - } ], - "rdfs:label" : "AgeIsObfuscated", - "rdfs:comment" : "The age of the patient has been modified for compliance reasons. The actual age differs from what is reported. Other date intervals for this patient may also be modified.", - "@type" : "rdfs:Class", - "sms:displayName" : "AgeIsObfuscated" - }, { - "@id" : "bts:TargetName", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "TargetName", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TargetName", - "sms:required" : "sms:false" - }, { - "@id" : "bts:TargetCaptureKit", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "TargetCaptureKit", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TargetCaptureKit", - "sms:required" : "sms:true" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:BisulfiteConversionKit", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:ZimoEZDNAMethylationKit" - }, { - "@id" : "bts:ZimoEZ-96DNAMethylationShallowKit" - }, { - "@id" : "bts:ZimoEZ-96DNAMethylationDeepKit" - }, { - "@id" : "bts:NEBNextEnzymaticMethyl-seqKit" - }, { - "@id" : "bts:AgilentSureSelectXTMethyl-Seq" - } ], - "rdfs:label" : "BisulfiteConversionKit", - "rdfs:comment" : "Name of the kit used in bisulfite conversion", - "@type" : "rdfs:Class", - "sms:displayName" : "BisulfiteConversionKit" - }, { - "@id" : "bts:SecondExon", - "@type" : "rdfs:Class", - "rdfs:comment" : "The second exon number involved in molecular variation. If a specific genetic variant is being reported, this property can be used to capture the second exon where that variant is located. This property is typically used for a translocation where two different locations are involved in the variation.", - "rdfs:label" : "SecondExon", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SecondExon", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:HistoneFamily", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:H1" - }, { - "@id" : "bts:H2A" - }, { - "@id" : "bts:H2B" - }, { - "@id" : "bts:H3" - }, { - "@id" : "bts:H4" - } ], - "rdfs:label" : "HistoneFamily", - "rdfs:comment" : "The text term used to describe the family, or classification of a group of basic proteins found in chromatin, called histones.", - "@type" : "rdfs:Class", - "sms:displayName" : "HistoneFamily" - }, { - "@id" : "bts:BloodTestNormalRangeUpper", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric value used to describe the upper limit of the normal range used to describe a healthy individual at the institution where the test was completed.", - "rdfs:label" : "BloodTestNormalRangeUpper", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BloodTestNormalRangeUpper", - "sms:required" : "sms:false" - }, { - "@id" : "bts:LibraryPrepKitVersion", - "@type" : "rdfs:Class", - "rdfs:comment" : "Version of Library Prep Kit. String", - "rdfs:label" : "LibraryPrepKitVersion", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "LibraryPrepKitVersion", - "sms:required" : "sms:true" - }, { - "@id" : "bts:Immunosuppression", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Immunosuppression", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Immunosuppression", - "sms:required" : "sms:false" - }, { - "@id" : "bts:Authors", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Authors", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Authors", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:OvarianCancerPlatinumStatus", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Datanotavailable" - }, { - "@id" : "bts:Platinum-refractory" - }, { - "@id" : "bts:Platinum-sensitive" - }, { - "@id" : "bts:Platinum-resistant" - } ], - "rdfs:label" : "OvarianCancerPlatinumStatus", - "rdfs:comment" : "Text term to indicate the status of treatment with platinum in participant with ovarian cancer", - "@type" : "rdfs:Class", - "sms:displayName" : "OvarianCancerPlatinumStatus" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:AlcoholIntensity", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Drinker" - }, { - "@id" : "bts:HeavyDrinker" - }, { - "@id" : "bts:LifelongNon-Drinker" - }, { - "@id" : "bts:Non-Drinker" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:OccasionalDrinker" - }, { - "@id" : "bts:unknown" - } ], - "rdfs:label" : "AlcoholIntensity", - "rdfs:comment" : "Category to describe the patient's current level of alcohol use as self-reported by the patient.", - "@type" : "rdfs:Class", - "sms:displayName" : "AlcoholIntensity" - }, { - "@id" : "bts:Transcript", - "@type" : "rdfs:Class", - "rdfs:comment" : "Alphanumeric value used to describe the transcript of a specific genetic variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "Transcript", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Transcript", - "sms:required" : "sms:false" - }, { - "@id" : "bts:EducationLevel", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "EducationLevel", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "EducationLevel", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:DimensionOrder", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:XYZCT" - }, { - "@id" : "bts:XYZTC" - }, { - "@id" : "bts:XYCTZ" - }, { - "@id" : "bts:XYCZT" - }, { - "@id" : "bts:XYTZC" - }, { - "@id" : "bts:ZYX" - } ], - "rdfs:label" : "DimensionOrder", - "rdfs:comment" : "The order in which the individual planes of data are interleaved.", - "@type" : "rdfs:Class", - "sms:displayName" : "DimensionOrder" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ContraceptiveUseIndicator", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Yes" - }, { - "@id" : "bts:No" - }, { - "@id" : "bts:NotDocumented" - } ], - "rdfs:label" : "ContraceptiveUseIndicator", - "rdfs:comment" : "Indicates whether individual has used some type of contraception.", - "@type" : "rdfs:Class", - "sms:displayName" : "ContraceptiveUseIndicator" - }, { - "@id" : "bts:Parity", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of pregnancies carried over the threshold of viability", - "rdfs:label" : "Parity", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Parity", - "sms:required" : "sms:false" - }, { - "@id" : "bts:AlcoholDaysPerWeek", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric value used to describe the average number of days each week that a person consumes an alcoholic beverage.", - "rdfs:label" : "AlcoholDaysPerWeek", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AlcoholDaysPerWeek", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:AnalyteType", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:TissueSectionAnalyte" - }, { - "@id" : "bts:SerumAnalyte" - }, { - "@id" : "bts:PBMCsorPlasmaorSerumAnalyte" - }, { - "@id" : "bts:Plasma" - }, { - "@id" : "bts:TissueBlockAnalyte" - }, { - "@id" : "bts:cfDNAAnalyte" - }, { - "@id" : "bts:DNAAnalyte" - }, { - "@id" : "bts:RNAAnalyte" - }, { - "@id" : "bts:cDNALibrariesAnalyte" - }, { - "@id" : "bts:PBMCs" - }, { - "@id" : "bts:TotalRNAAnalyte" - } ], - "rdfs:label" : "AnalyteType", - "rdfs:comment" : "The kind of molecular specimen analyte: a molecular derivative (I.e. RNA / DNA / Protein Lysate) obtained from a specimen", - "@type" : "rdfs:Class", - "sms:displayName" : "AnalyteType" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:FOVYUnit", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:cm" - }, { - "@id" : "bts:mm" - }, { - "@id" : "bts:µm" - }, { - "@id" : "bts:nm" - }, { - "@id" : "bts:Å" - } ], - "rdfs:label" : "FOVYUnit", - "rdfs:comment" : "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "@type" : "rdfs:Class", - "sms:displayName" : "FOVYUnit" - }, { - "@id" : "bts:Cytoband", - "@type" : "rdfs:Class", - "rdfs:comment" : "Alphanumeric value used to describe the cytoband or chromosomal location targeted or included in molecular analysis. If a specific genetic variant is being reported, this property can be used to capture the cytoband where the variant is located. Format: [chromosome][chromosome arm].[band+sub-bands]. Example: 17p13.1. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "Cytoband", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Cytoband", - "sms:required" : "sms:false" - }, { - "@id" : "bts:PeaksCallingSoftware", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "PeaksCallingSoftware", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PeaksCallingSoftware", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:SecondhandSmokeasChild", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:No" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Yes" - }, { - "@id" : "bts:unknown" - } ], - "rdfs:label" : "SecondhandSmokeasChild", - "rdfs:comment" : "The text term used to indicate whether the patient was exposed to secondhand smoke as a child.", - "@type" : "rdfs:Class", - "sms:displayName" : "SecondhandSmokeasChild" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:PhysicalSizeXUnit", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:cm" - }, { - "@id" : "bts:mm" - }, { - "@id" : "bts:µm" - }, { - "@id" : "bts:nm" - }, { - "@id" : "bts:Å" - } ], - "rdfs:label" : "PhysicalSizeXUnit", - "rdfs:comment" : "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", - "@type" : "rdfs:Class", - "sms:displayName" : "PhysicalSizeXUnit" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:CancerAssociatedGeneMutations", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:PMS2mutation" - }, { - "@id" : "bts:POT1mutation" - }, { - "@id" : "bts:TP53mutation" - }, { - "@id" : "bts:H3K27Mmutation" - }, { - "@id" : "bts:SMARCA4mutation" - }, { - "@id" : "bts:SDHDmutation" - }, { - "@id" : "bts:BRCA1mutation" - }, { - "@id" : "bts:CHKmutation" - }, { - "@id" : "bts:RB1mutation" - }, { - "@id" : "bts:H3G34R/Vmutation" - }, { - "@id" : "bts:SDHCmutation" - }, { - "@id" : "bts:SDHBmutation" - }, { - "@id" : "bts:TSC2mutation" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:HOXB13mutation" - }, { - "@id" : "bts:NF1mutation" - }, { - "@id" : "bts:VHLmutation" - }, { - "@id" : "bts:BAP1mutation" - }, { - "@id" : "bts:SETD2mutation" - }, { - "@id" : "bts:BRCA1and2mutation" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:PTENmutation" - }, { - "@id" : "bts:NotApplicable" - }, { - "@id" : "bts:STK11mutation" - }, { - "@id" : "bts:PAX5mutation" - }, { - "@id" : "bts:RETmutation" - }, { - "@id" : "bts:NF2mutation" - }, { - "@id" : "bts:ETV6mutation" - }, { - "@id" : "bts:PolDmutation" - }, { - "@id" : "bts:IKZF1mutation" - }, { - "@id" : "bts:PALB2mutation" - }, { - "@id" : "bts:SDHAF2mutation" - }, { - "@id" : "bts:EGFRmutation" - }, { - "@id" : "bts:PDGFRAmutation" - }, { - "@id" : "bts:ARFmutation" - }, { - "@id" : "bts:PTCHmutation" - }, { - "@id" : "bts:PRKAR1Amutation" - }, { - "@id" : "bts:MUTYHmutation" - }, { - "@id" : "bts:MSH6mutation" - }, { - "@id" : "bts:CDKN2Aandp14ARFmutation" - }, { - "@id" : "bts:GREM1mutation" - }, { - "@id" : "bts:MAXmutation" - }, { - "@id" : "bts:FHmutation" - }, { - "@id" : "bts:PHOX2Bmutation" - }, { - "@id" : "bts:CDH1mutation" - }, { - "@id" : "bts:MSH2mutation" - }, { - "@id" : "bts:MLH1mutation" - }, { - "@id" : "bts:METmutation" - }, { - "@id" : "bts:ATRXmutation" - }, { - "@id" : "bts:KRASmutation" - }, { - "@id" : "bts:KITmutation" - }, { - "@id" : "bts:PolEmutation" - }, { - "@id" : "bts:TSC1mutation" - }, { - "@id" : "bts:BLMmutation" - }, { - "@id" : "bts:ATMmutation" - }, { - "@id" : "bts:ACVR1mutation" - }, { - "@id" : "bts:FLCNmutation" - }, { - "@id" : "bts:MEN1mutation" - }, { - "@id" : "bts:TMEM127mutation" - }, { - "@id" : "bts:BRAFmutation" - }, { - "@id" : "bts:ROS1mutation" - }, { - "@id" : "bts:SMAD4mutation" - }, { - "@id" : "bts:ALKmutation" - }, { - "@id" : "bts:BMPR1Amutation" - }, { - "@id" : "bts:APCmutation" - }, { - "@id" : "bts:BRCA2mutation" - }, { - "@id" : "bts:SMARCB1mutation" - }, { - "@id" : "bts:CDKN2Amutation" - }, { - "@id" : "bts:RAD51Cmutation" - }, { - "@id" : "bts:p14ARFmutation" - } ], - "rdfs:label" : "CancerAssociatedGeneMutations", - "rdfs:comment" : "Type of inherited germline or other gene mutations that confers heightened susceptibility to cancer identified in patient history", - "@type" : "rdfs:Class", - "sms:displayName" : "CancerAssociatedGeneMutations" - }, { - "@id" : "bts:ParentDataFileID", - "@type" : "rdfs:Class", - "rdfs:comment" : "Optional, Synapse ID of a parent data file from which this data file is derived.", - "rdfs:label" : "ParentDataFileID", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ParentDataFileID", - "sms:required" : "sms:false" - }, { - "@id" : "bts:FOVnumber", - "@type" : "rdfs:Class", - "rdfs:comment" : "Index of FOV (as it pertains to its sequence order). Integer >= 1", - "rdfs:label" : "FOVnumber", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "FOVnumber", - "sms:required" : "sms:false" - }, { - "@id" : "bts:ProportionofMinimumCpGCoverage10X", - "@type" : "rdfs:Class", - "rdfs:comment" : "(For whole genome sequencing or targeted sequencing) Proportion of all reference bases for that achieves 10X or greater coverage per CpG.", - "rdfs:label" : "ProportionofMinimumCpGCoverage10X", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ProportionofMinimumCpGCoverage10X", - "sms:required" : "sms:false" - }, { - "@id" : "bts:ChannelMetadataFilename", - "@type" : "rdfs:Class", - "rdfs:comment" : "Full path of uploaded companion CSV file containing channel-level metadata details", - "rdfs:label" : "ChannelMetadataFilename", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ChannelMetadataFilename", - "sms:required" : "sms:false" - }, { - "@id" : "bts:Secondhandsmokeexposureyears", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Secondhandsmokeexposureyears", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Secondhandsmokeexposureyears", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Read3", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:CellBarcodeandDNAInsert" - }, { - "@id" : "bts:SampleIndexandDNAInsert" - }, { - "@id" : "bts:DNAInsert" - }, { - "@id" : "bts:SampleIndex" - }, { - "@id" : "bts:CellBarcode" - } ], - "rdfs:label" : "Read3", - "rdfs:comment" : "Read 3 content description", - "@type" : "rdfs:Class", - "sms:displayName" : "Read3" - }, { - "@id" : "bts:CellMedianNumberReads", - "@type" : "rdfs:Class", - "rdfs:comment" : "Median number of reads per cell. Number", - "rdfs:label" : "CellMedianNumberReads", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "CellMedianNumberReads", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Gender", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Female" - }, { - "@id" : "bts:Male" - }, { - "@id" : "bts:Unspecified" - }, { - "@id" : "bts:Unknown" - } ], - "rdfs:label" : "Gender", - "rdfs:comment" : "Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. [Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.]", - "@type" : "rdfs:Class", - "sms:displayName" : "Gender" - }, { - "@id" : "bts:WorkflowVersion", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "WorkflowVersion", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "WorkflowVersion", - "sms:required" : "sms:false" - }, { - "@id" : "bts:MenopauseStatus", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "MenopauseStatus", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "MenopauseStatus", - "sms:required" : "sms:false" - }, { - "@id" : "bts:SubCycleNumber", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "SubCycleNumber", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SubCycleNumber", - "sms:required" : "sms:false" - }, { - "@id" : "bts:GenomicReferenceURL", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "GenomicReferenceURL", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "GenomicReferenceURL", - "sms:required" : "sms:false" - }, { - "@id" : "bts:GenomicReference", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "GenomicReference", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "GenomicReference", - "sms:required" : "sms:false" - }, { - "@id" : "bts:PUC19methylationratio", - "@type" : "rdfs:Class", - "rdfs:comment" : "Methylation ratio of mostly methylated pUC19 control, as a percentage", - "rdfs:label" : "PUC19methylationratio", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PUC19methylationratio", - "sms:required" : "sms:true" - }, { - "@id" : "bts:Lambdamethylationratio", - "@type" : "rdfs:Class", - "rdfs:comment" : "Methylation ratio of mostly unmethylated lambda control, as a percentage", - "rdfs:label" : "Lambdamethylationratio", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Lambdamethylationratio", - "sms:required" : "sms:true" - }, { - "@id" : "bts:SizeY", - "@type" : "rdfs:Class", - "rdfs:comment" : "Size of image: Y dimension (in pixels). Integer >= 1", - "rdfs:label" : "SizeY", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SizeY", - "sms:required" : "sms:false" - }, { - "@id" : "bts:CellCount", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric value used to describe the number of cells used for molecular testing. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "CellCount", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "CellCount", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:AnaplasiaPresentType", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Equivocal" - }, { - "@id" : "bts:Absent" - }, { - "@id" : "bts:Present" - }, { - "@id" : "bts:Diffuse" - }, { - "@id" : "bts:Focal" - }, { - "@id" : "bts:Sclerosis" - } ], - "rdfs:label" : "AnaplasiaPresentType", - "rdfs:comment" : "The text term used to describe the morphologic findings indicating the presence of a malignant cellular infiltrate characterized by the presence of large pleomorphic cells, necrosis, and high mitotic activity in a tissue sample.", - "@type" : "rdfs:Class", - "sms:displayName" : "AnaplasiaPresentType" - }, { - "@id" : "bts:SampleID", - "@type" : "rdfs:Class", - "rdfs:comment" : " ID associated with a biosample", - "rdfs:label" : "SampleID", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SampleID", - "sms:required" : "sms:true" - }, { - "@id" : "bts:ExcitationWavelength", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "ExcitationWavelength", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "ExcitationWavelength", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:BIRADSMammographyBreastDensityCategory", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Datanotavailable" - }, { - "@id" : "bts:Predominantlyfatty" - }, { - "@id" : "bts:Scatteredfibroglandulardensities" - }, { - "@id" : "bts:Heterogeneouslydense" - }, { - "@id" : "bts:Extremelydense" - } ], - "rdfs:label" : "BIRADSMammographyBreastDensityCategory", - "rdfs:comment" : "The category that describes the relative amount of different tissues present in the breast on a mammogram based on the updated 2015 edition of the American College of Radiology's Breast Imaging Reporting and Data System (BI-RADS) reporting guidelines.", - "@type" : "rdfs:Class", - "sms:displayName" : "BIRADSMammographyBreastDensityCategory" - }, { - "@id" : "bts:Weight", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Weight", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Weight", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:OvarianCancerSurgicalOutcome", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Other" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Datanotavailable" - }, { - "@id" : "bts:R0resection" - }, { - "@id" : "bts:Optimalcytoreduction" - }, { - "@id" : "bts:Sub-optimalcytoreduction" - } ], - "rdfs:label" : "OvarianCancerSurgicalOutcome", - "rdfs:comment" : "Text term that describes the kind of surgical treatment administered.", - "@type" : "rdfs:Class", - "sms:displayName" : "OvarianCancerSurgicalOutcome" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:RelationshipPrimaryDiagnosis", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:ProstateCancer" - }, { - "@id" : "bts:TesticularCancer" - }, { - "@id" : "bts:Cancer" - }, { - "@id" : "bts:KaposiSarcoma" - }, { - "@id" : "bts:BoneCancer" - }, { - "@id" : "bts:LiverCancer" - }, { - "@id" : "bts:CNSCancer" - }, { - "@id" : "bts:UterineCancer" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:LymphNodeCancer" - }, { - "@id" : "bts:RectalCancer" - }, { - "@id" : "bts:WilmsTumor" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Osteosarcoma" - }, { - "@id" : "bts:Chondrosarcoma" - }, { - "@id" : "bts:Mesothelioma" - }, { - "@id" : "bts:GastricCancer" - }, { - "@id" : "bts:CervicalCancer" - }, { - "@id" : "bts:EwingSarcoma" - }, { - "@id" : "bts:Glioblastoma" - }, { - "@id" : "bts:SkinCancer" - }, { - "@id" : "bts:TonsillarCancer" - }, { - "@id" : "bts:BileDuctCancer" - }, { - "@id" : "bts:TongueCancer" - }, { - "@id" : "bts:LaryngealCancer" - }, { - "@id" : "bts:Melanoma" - }, { - "@id" : "bts:HematologicCancer" - }, { - "@id" : "bts:ThroatCancer" - }, { - "@id" : "bts:ColorectalCancer" - }, { - "@id" : "bts:KidneyCancer" - }, { - "@id" : "bts:SpleenCancer" - }, { - "@id" : "bts:BreastCancer" - }, { - "@id" : "bts:Leukemia" - }, { - "@id" : "bts:Sarcoma" - }, { - "@id" : "bts:BloodCancer" - }, { - "@id" : "bts:Neuroblastoma" - }, { - "@id" : "bts:GynecologicCancer" - }, { - "@id" : "bts:Rhabdomyosarcoma" - }, { - "@id" : "bts:PancreasCancer" - }, { - "@id" : "bts:AdrenalGlandCancer" - }, { - "@id" : "bts:ThyroidCancer" - }, { - "@id" : "bts:MultipleMyeloma" - }, { - "@id" : "bts:LungCancer" - }, { - "@id" : "bts:BasalCellCancer" - }, { - "@id" : "bts:BrainCancer" - }, { - "@id" : "bts:EsophagealCancer" - }, { - "@id" : "bts:Lymphoma" - }, { - "@id" : "bts:OvarianCancer" - }, { - "@id" : "bts:GallbladderCancer" - }, { - "@id" : "bts:HeadandNeckCancer" - }, { - "@id" : "bts:BladderCancer" - } ], - "rdfs:label" : "RelationshipPrimaryDiagnosis", - "rdfs:comment" : "The text term used to describe the malignant diagnosis of the patient's relative with a history of cancer.", - "@type" : "rdfs:Class", - "sms:displayName" : "RelationshipPrimaryDiagnosis" - }, { - "@id" : "bts:AppliedHardTrimming", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "AppliedHardTrimming", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AppliedHardTrimming", - "sms:required" : "sms:false" - }, { - "@id" : "bts:AAChange", - "@type" : "rdfs:Class", - "rdfs:comment" : "Alphanumeric value used to describe the amino acid change for a specific genetic variant. Example: R116Q. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "rdfs:label" : "AAChange", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "AAChange", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:NucleicAcidSource", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:SingleCell" - }, { - "@id" : "bts:SingleNucleus" - }, { - "@id" : "bts:BulkNuclei" - }, { - "@id" : "bts:BulkWholeCell" - }, { - "@id" : "bts:Micro-region" - } ], - "rdfs:label" : "NucleicAcidSource", - "rdfs:comment" : "The source of the input nucleic molecule", - "@type" : "rdfs:Class", - "sms:displayName" : "NucleicAcidSource" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ExtentofTumorResection", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Minor" - }, { - "@id" : "bts:OpenBiopsy" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:GrossTotalResection" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:NotApplicable" - }, { - "@id" : "bts:Segmental" - }, { - "@id" : "bts:NTR" - }, { - "@id" : "bts:Suboptimaldebulking" - }, { - "@id" : "bts:SubtotalResection" - }, { - "@id" : "bts:Other" - }, { - "@id" : "bts:Partialdebulking" - }, { - "@id" : "bts:Suboptimal" - }, { - "@id" : "bts:Optimaldebulking" - }, { - "@id" : "bts:ExtensiveSubtotal" - } ], - "rdfs:label" : "ExtentofTumorResection", - "rdfs:comment" : "The degree to which the lesion has been cut out, or resected.", - "@type" : "rdfs:Class", - "sms:displayName" : "ExtentofTumorResection" - }, { - "@id" : "bts:TimepointLabel", - "@type" : "rdfs:Class", - "rdfs:comment" : "Label to identify the time point at which the clinical data or biospecimen was obtained (e.g. Baseline, End of Treatment, Overall survival, Final). NO PHI/PII INFORMATION IS ALLOWED.", - "rdfs:label" : "TimepointLabel", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TimepointLabel", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Ploidy", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Aneuploid" - }, { - "@id" : "bts:Diploid" - }, { - "@id" : "bts:Hyperdiploid" - }, { - "@id" : "bts:Hypodiploid" - }, { - "@id" : "bts:NearDiploid" - }, { - "@id" : "bts:Tetraploid" - } ], - "rdfs:label" : "Ploidy", - "rdfs:comment" : "Text term used to describe the number of sets of homologous chromosomes.", - "@type" : "rdfs:Class", - "sms:displayName" : "Ploidy" - }, { - "@id" : "bts:PortionWeight", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric value that represents the sample portion weight, measured in milligrams.", - "rdfs:label" : "PortionWeight", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "PortionWeight", - "sms:required" : "sms:false" - }, { - "@id" : "bts:DaystoProgression", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of days between the date used for index and the date the patient's disease progressed.", - "rdfs:label" : "DaystoProgression", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "DaystoProgression", - "sms:required" : "sms:false" - }, { - "@id" : "bts:RRIDidentifier", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "RRIDidentifier", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "RRIDidentifier", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:ClassBRCA2", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Pathogenic" - }, { - "@id" : "bts:LikelyPathogenic" - }, { - "@id" : "bts:VUS" - }, { - "@id" : "bts:Negative" - } ], - "rdfs:label" : "ClassBRCA2", - "rdfs:comment" : "The BRCA2 classification refers to the categorization of genetic test results for the BRCA2 gene into four options, pathogenic (mutation known to significantly increase cancer risk), likely pathogenic (mutation likely increases cancer risk), variant of uncertain significance (VUS, unclear impact on cancer risk), and negative (no harmful mutations detected).", - "@type" : "rdfs:Class", - "sms:displayName" : "ClassBRCA2" - }, { - "@id" : "bts:WhitelistCellBarcodeFileLink", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "WhitelistCellBarcodeFileLink", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "WhitelistCellBarcodeFileLink", - "sms:required" : "sms:false" - }, { - "@id" : "bts:StartDaysfromIndex", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of days from the date of birth (index date) to the date of an event (e.g. exposure to environmental factor, treatment start, etc.). If not applicable please enter 'Not Applicable'", - "rdfs:label" : "StartDaysfromIndex", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "StartDaysfromIndex", - "sms:required" : "sms:false" - }, { - "@id" : "bts:Ecigvapetimesperday", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Ecigvapetimesperday", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Ecigvapetimesperday", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:FamilyMemberVitalStatusIndicator", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Yes" - }, { - "@id" : "bts:No" - }, { - "@id" : "bts:unknown" - } ], - "rdfs:label" : "FamilyMemberVitalStatusIndicator", - "rdfs:comment" : "The response indicates whether the family member of the patient with a history of cancer is alive. (Extension to GDC attributes in Family History Tier 1)", - "@type" : "rdfs:Class", - "sms:displayName" : "FamilyMemberVitalStatusIndicator" - }, { - "@id" : "bts:SectionThicknessValue", - "@type" : "rdfs:Class", - "rdfs:comment" : "Numeric value to describe the thickness of a slice to tissue taken from a biospecimen, measured in microns (um).", - "rdfs:label" : "SectionThicknessValue", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SectionThicknessValue", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:TypeContraceptiveUse", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "sms:validationRules" : [ "list like" ], - "schema:rangeIncludes" : [ { - "@id" : "bts:Oral" - }, { - "@id" : "bts:Oral(estrogen)" - }, { - "@id" : "bts:Oral(progesterone)" - }, { - "@id" : "bts:Oral(estrogen/progesterone)" - }, { - "@id" : "bts:Malesterilization" - }, { - "@id" : "bts:Condoms" - }, { - "@id" : "bts:Diaphragm" - }, { - "@id" : "bts:Patch" - }, { - "@id" : "bts:Patch(progesterone)" - }, { - "@id" : "bts:Vaginalring" - }, { - "@id" : "bts:Vaginalring(estrogen/progesterone)" - }, { - "@id" : "bts:IUD" - }, { - "@id" : "bts:IUD(progesterone)" - }, { - "@id" : "bts:Implant" - }, { - "@id" : "bts:Implant(progesterone)" - }, { - "@id" : "bts:Injection(progesterone)" - }, { - "@id" : "bts:Bilateraltuballigation" - }, { - "@id" : "bts:Naturalfamilyplanning" - }, { - "@id" : "bts:Rhythm" - }, { - "@id" : "bts:NotDocumented" - } ], - "rdfs:label" : "TypeContraceptiveUse", - "rdfs:comment" : "Type of contraceptive(s) used within the individual's history.", - "@type" : "rdfs:Class", - "sms:displayName" : "TypeContraceptiveUse" - }, { - "@id" : "bts:SoftwareandVersion", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "SoftwareandVersion", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "SoftwareandVersion", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:KnownGeneticPredispositionMutation", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Yes" - }, { - "@id" : "bts:No" - }, { - "@id" : "bts:unknown" - } ], - "rdfs:label" : "KnownGeneticPredispositionMutation", - "rdfs:comment" : "A yes/no/unknown indicator to identify whether there is a known genetic predisposition mutation present in the patient.", - "@type" : "rdfs:Class", - "sms:displayName" : "KnownGeneticPredispositionMutation" - }, { - "@id" : "bts:TotalDNAInput", - "@type" : "rdfs:Class", - "rdfs:comment" : "A sample amount used for the total number of reads, in microgram or nanogram.", - "rdfs:label" : "TotalDNAInput", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "TotalDNAInput", - "sms:required" : "sms:false" - }, { - "@id" : "bts:BiospecimenDimension1", - "@type" : "rdfs:Class", - "rdfs:comment" : "First dimension of tissue fragment (number, up to one decimal place) measured in units as defined by the \"\"dimensions_unit\"\" CDE", - "rdfs:label" : "BiospecimenDimension1", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BiospecimenDimension1", - "sms:required" : "sms:false" - }, { - "@id" : "bts:NucleiBarcodeLength", - "@type" : "rdfs:Class", - "rdfs:comment" : "Nuclei Barcode Length", - "rdfs:label" : "NucleiBarcodeLength", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "NucleiBarcodeLength", - "sms:required" : "sms:false" - }, { - "@id" : "bts:HER2BreastCarcinomaCopyNumberTotal", - "@type" : "rdfs:Class", - "rdfs:comment" : "Result of HER2 Copy Number testing (in a participant with breast cancer), expressed as a range of values.", - "rdfs:label" : "HER2BreastCarcinomaCopyNumberTotal", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "HER2BreastCarcinomaCopyNumberTotal", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:MammaprintRiskGroup", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Datanotavailable" - }, { - "@id" : "bts:Highrisk" - }, { - "@id" : "bts:Intermediaterisk" - }, { - "@id" : "bts:Lowrisk" - } ], - "rdfs:label" : "MammaprintRiskGroup", - "rdfs:comment" : "Text term that represents the risk group for breast cancer as determined by assessment of the MammaPrint test.", - "@type" : "rdfs:Class", - "sms:displayName" : "MammaprintRiskGroup" - }, { - "@id" : "bts:Height", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Height", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Height", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Race", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:true", - "schema:rangeIncludes" : [ { - "@id" : "bts:AmericanIndianorAlaskaNative" - }, { - "@id" : "bts:White" - }, { - "@id" : "bts:Black" - }, { - "@id" : "bts:Asian" - }, { - "@id" : "bts:NativeHawaiianorOtherPacificIslander" - }, { - "@id" : "bts:NA" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Unknown" - }, { - "@id" : "bts:Other" - } ], - "rdfs:label" : "Race", - "rdfs:comment" : "An arbitrary classification of a taxonomic group that is a division of a species. It usually arises as a consequence of geographical isolation withina a species and is characterized by shared heredity, physical attributes and behavior, and in the case of humans, by common history, nationality, or geographic distribution.", - "@type" : "rdfs:Class", - "sms:displayName" : "Race" - }, { - "@id" : "bts:BiospecimenDimension3", - "@type" : "rdfs:Class", - "rdfs:comment" : "Third dimension of tissue fragment (number, up to one decimal place) measured in units as defined by the \"\"dimensions_unit\"\" CDE", - "rdfs:label" : "BiospecimenDimension3", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "BiospecimenDimension3", - "sms:required" : "sms:false" - }, { - "@id" : "bts:OncotypeScore", - "@type" : "rdfs:Class", - "rdfs:comment" : "OncotypeDX recurrence score", - "rdfs:label" : "OncotypeScore", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "OncotypeScore", - "sms:required" : "sms:false" - }, { - "@id" : "bts:InputCellsandNuclei", - "@type" : "rdfs:Class", - "rdfs:comment" : "Number of cells and number of nuclei input; entry format: number, number", - "rdfs:label" : "InputCellsandNuclei", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "InputCellsandNuclei", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:PRReceptorStatus", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Borderline" - }, { - "@id" : "bts:Equivocal" - }, { - "@id" : "bts:Indeterminate" - }, { - "@id" : "bts:Negative" - }, { - "@id" : "bts:NotPerformed" - }, { - "@id" : "bts:PerformedbutNotAvailable" - }, { - "@id" : "bts:Positive" - } ], - "rdfs:label" : "PRReceptorStatus", - "rdfs:comment" : "Text term to represent the overall result of Progresterone Receptor (PR) testing in a participant with breast cancer", - "@type" : "rdfs:Class", - "sms:displayName" : "PRReceptorStatus" - }, { - "@id" : "bts:Fluorophore", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Fluorophore", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Fluorophore", - "sms:required" : "sms:false" - }, { - "@id" : "bts:Typeofsmokeexposurecumulativeyears", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Typeofsmokeexposurecumulativeyears", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Typeofsmokeexposurecumulativeyears", - "sms:required" : "sms:false" - }, { - "@id" : "bts:Clone", - "@type" : "rdfs:Class", - "rdfs:comment" : "TBD", - "rdfs:label" : "Clone", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Clone", - "sms:required" : "sms:false" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:DiagnosisStatusType", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Neverreceiveddiagnosisofcancer" - }, { - "@id" : "bts:Previousdiagnosisofcancer" - }, { - "@id" : "bts:Currentdiagnosisofcancer" - }, { - "@id" : "bts:Unknown" - } ], - "rdfs:label" : "DiagnosisStatusType", - "rdfs:comment" : "Diagnosis status to provide information on any history with cancer (if applicable).", - "@type" : "rdfs:Class", - "sms:displayName" : "DiagnosisStatusType" - }, { - "@id" : "bts:Age", - "@type" : "rdfs:Class", - "rdfs:comment" : "Age (in years) of individual when samples are contributed/biobanked, as a positive number such as 40 or 56.5.", - "rdfs:label" : "Age", - "rdfs:subClassOf" : [ ], - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:displayName" : "Age", - "sms:required" : "sms:true" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:TobaccoUse", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:CurrentSmoker" - }, { - "@id" : "bts:CurrentReformedSmoker" - }, { - "@id" : "bts:CurrentReformedSmokerfor15yrs" - }, { - "@id" : "bts:DurationNotSpecified" - }, { - "@id" : "bts:NeverSmoker" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Unknown" - } ], - "rdfs:label" : "TobaccoUse", - "rdfs:comment" : "Tobacco use characterization. More quantitative data may be available in PackYearsSmoked.", - "@type" : "rdfs:Class", - "sms:displayName" : "TobaccoUse" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Zstack", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ ], - "rdfs:label" : "Zstack", - "rdfs:comment" : "Does data file contain a Z-stack of images", - "@type" : "rdfs:Class", - "sms:displayName" : "Zstack" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:Chromosome", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:chr7" - }, { - "@id" : "bts:chr15" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:chr3" - }, { - "@id" : "bts:chr1" - }, { - "@id" : "bts:chr18" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:chrY" - }, { - "@id" : "bts:chr22" - }, { - "@id" : "bts:chr14" - }, { - "@id" : "bts:chr12" - }, { - "@id" : "bts:chr11" - }, { - "@id" : "bts:chr17" - }, { - "@id" : "bts:chrM" - }, { - "@id" : "bts:chr4" - }, { - "@id" : "bts:chr21" - }, { - "@id" : "bts:chr6" - }, { - "@id" : "bts:chr10" - }, { - "@id" : "bts:chr16" - }, { - "@id" : "bts:chrX" - }, { - "@id" : "bts:chr23" - }, { - "@id" : "bts:chr8" - }, { - "@id" : "bts:chr2" - }, { - "@id" : "bts:chr13" - }, { - "@id" : "bts:chr19" - }, { - "@id" : "bts:chr20" - }, { - "@id" : "bts:chr5" - }, { - "@id" : "bts:chr9" - } ], - "rdfs:label" : "Chromosome", - "rdfs:comment" : "The text term used to describe a chromosome targeted or included in molecular testing. If a specific genetic variant is being reported, this property can be used to capture the chromosome where that variant is located. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", - "@type" : "rdfs:Class", - "sms:displayName" : "Chromosome" - }, { - "rdfs:subClassOf" : [ ], - "@id" : "bts:MutationalSignatures", - "schema:isPartOf" : { - "@id" : "http://schema.biothings.io/" - }, - "sms:required" : "sms:false", - "schema:rangeIncludes" : [ { - "@id" : "bts:Signature19" - }, { - "@id" : "bts:Signature1A" - }, { - "@id" : "bts:Iggenehypermutation" - }, { - "@id" : "bts:alteredactivityoftheerror-pronepolymerasePOLε(POLE)" - }, { - "@id" : "bts:Signature3" - }, { - "@id" : "bts:Signature20" - }, { - "@id" : "bts:NotReported" - }, { - "@id" : "bts:Signature17" - }, { - "@id" : "bts:Signature4" - }, { - "@id" : "bts:Datanotavailable" - }, { - "@id" : "bts:Signature5" - }, { - "@id" : "bts:Signature9" - }, { - "@id" : "bts:unknown" - }, { - "@id" : "bts:Signature14" - }, { - "@id" : "bts:Signature13" - }, { - "@id" : "bts:NotApplicable" - }, { - "@id" : "bts:Signature12" - }, { - "@id" : "bts:Signature8" - }, { - "@id" : "bts:ActivationInducedDeaminases(AID)associatedmutations" - }, { - "@id" : "bts:Signature7" - }, { - "@id" : "bts:microsatelliteinstability(additionsanddeletions)" - }, { - "@id" : "bts:AlkylatingAgents(Temozolomide)inducedmutations" - }, { - "@id" : "bts:localizedsubstitutionhypermutation(kataegis)" - }, { - "@id" : "bts:Signature16" - }, { - "@id" : "bts:Signature6" - }, { - "@id" : "bts:Other" - }, { - "@id" : "bts:Signature21" - }, { - "@id" : "bts:DNAMMRDeficiency" - }, { - "@id" : "bts:APOBECenzymesassociatedmutations" - }, { - "@id" : "bts:Tobaccouseassociatedmutations" - }, { - "@id" : "bts:transcriptionalstrandbias" - }, { - "@id" : "bts:Signature1B" - }, { - "@id" : "bts:Signature10" - }, { - "@id" : "bts:UVlightinducedmutations" - }, { - "@id" : "bts:Signature18" - }, { - "@id" : "bts:Signature11" - }, { - "@id" : "bts:Signature2" - }, { - "@id" : "bts:methylatedCpGsequencesmutagenesis(deaminationof5-methyl-cytosine)" - }, { - "@id" : "bts:Signature15" - }, { - "@id" : "bts:ageofcancerdiagnosis" - } ], - "rdfs:label" : "MutationalSignatures", - "rdfs:comment" : "Mutational signatures identified in the patient, includes signatures linked to selected exogenous carcinogens, endogenous and enzymatic modification of DNA or defective DNA repair. Note: Include only outputs of tests that were completed clinically for the participant and only include data from a diagnostic array that was completed prior to research sequencing was done. 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"bts:Bronchiolo-alveolarcarcinomaNOS" + }, + { + "@id": "bts:Chroniclymphoidleukemia" + }, + { + "@id": "bts:Paragangliomamalignant" + }, + { + "@id": "bts:ClassicalHodgkinlymphomanodularsclerosisgrade2" + }, + { + "@id": "bts:B-ALL" + }, + { + "@id": "bts:Skinappendagecarcinoma" + }, + { + "@id": "bts:Epithelialtumorbenign" + }, + { + "@id": "bts:Blymphoblasticleukemia/lymphomaNOS" + }, + { + "@id": "bts:HodgkinlymphomanodularsclerosisNOS" + }, + { + "@id": "bts:MalignantlymphomalymphocyticdiffuseNOS" + }, + { + "@id": "bts:Pro-BALL" + }, + { + "@id": "bts:GastrinomaNOS" + }, + { + "@id": "bts:Intraductalcarcinomaclinging" + }, + { + "@id": "bts:Non-invasivelowgradeserouscarcinoma" + }, + { + "@id": "bts:AcutepromyelocyticleukemiaNOS" + }, + { + "@id": "bts:Malignantlymphomanon-HodgkinNOS" + }, + { + "@id": "bts:NotReported" + }, + { + "@id": "bts:Melanoticschwannoma" + }, + { + "@id": "bts:SplenicmarginalzonelymphomaNOS" + }, + { + "@id": "bts:Transitionalcellcarcinomainsitu" + }, + { + "@id": "bts:Chronicmonocyticleukemia" + }, + { + "@id": "bts:Gastrincelltumor" + }, + { + "@id": "bts:Papillaryserouscystadenocarcinoma" + }, + { + "@id": "bts:TeratomamalignantNOS" + }, + { + "@id": "bts:ClassicalHodgkinlymphomalymphocytedepletionreticular" + }, + { + "@id": "bts:Tumorcellsuncertainwhetherbenignormalignant" + }, + { + "@id": "bts:Epithelialtumormalignant" + }, + { + "@id": "bts:TubularandroblastomaNOS" + }, + { + "@id": "bts:Papillarycarcinomainsitu" + }, + { + "@id": "bts:PituitarycarcinomaNOS" + }, + { + "@id": "bts:Typicalcarcinoid" + }, + { + "@id": "bts:Non-smallcellcarcinoma" + }, + { + "@id": "bts:MeningiomaNOS" + }, + { + "@id": "bts:EndometrialsarcomaNOS" + }, + { + "@id": "bts:NeuroblastomaNOS" + }, + { + "@id": "bts:BcelllymphomaNOS" + }, + { + "@id": "bts:PeripheralT-celllymphomalargecell" + }, + { + "@id": "bts:RenalcellcarcinomaNOS" + }, + { + "@id": "bts:Renalcellcarcinomaspindlecell" + }, + { + "@id": "bts:Hepatocholangiocarcinoma" + }, + { + "@id": "bts:MalignantlymphomanodularNOS" + }, + { + "@id": "bts:Bronchiolo-alveolarcarcinomanon-mucinous" + }, + { + "@id": "bts:Unknown" + }, + { + "@id": "bts:Bronchiolo-alveolarcarcinomaindeterminatetype" + }, + { + "@id": "bts:Pleomorphiccarcinoma" + }, + { + "@id": "bts:PapillarycystadenomaNOS" + }, + { + "@id": "bts:Burkitttumor" + }, + { + "@id": "bts:BasalcellcarcinomaNOS" + }, + { + "@id": "bts:HepatocellularcarcinomaNOS" + }, + { + "@id": "bts:Undifferentiatedleukaemia" + }, + { + "@id": "bts:Gastrincelltumormalignant" + }, + { + "@id": "bts:Melanoameloblastoma" + }, + { + "@id": "bts:ProstaticintraepithelialneoplasiagradeIII" + }, + { + "@id": "bts:Mixedpinealtumor" + }, + { + "@id": "bts:Smallcellsarcoma" + }, + { + "@id": "bts:Carcinomainadenomatouspolyp" + }, + { + "@id": "bts:Pagetdiseaseextramammary" + }, + { + "@id": "bts:Intraductalcarcinomasolidtype" + }, + { + "@id": "bts:Livercellcarcinoma" + }, + { + "@id": "bts:Undifferentiatedsarcoma" + }, + { + "@id": "bts:Squamouscellcarcinomaclearcelltype" + }, + { + "@id": "bts:PituitaryadenomaNOS" + }, + { + "@id": "bts:EndometrioidcarcinomaNOS" + }, + { + "@id": "bts:PapillaryadenocarcinomaNOS" + }, + { + "@id": "bts:Ductcarcinomadesmoplastictype" + }, + { + "@id": "bts:Chroniclymphaticleukemia" + }, + { + "@id": "bts:SquamouscellcarcinomainsituNOS" + }, + { + "@id": "bts:Intraductalpapillaryadenocarcinomawithinvasion" + }, + { + "@id": "bts:Adenocarcinomacombinedwithothertypesofcarcinoma" + }, + { + "@id": "bts:Combinedhepatocellularcarcinomaandcholangiocarcinoma" + }, + { + "@id": "bts:Primaryamyloidosis" + }, + { + "@id": "bts:Preleukemia" + }, + { + "@id": "bts:Adenocarcinomaofanalglands" + }, + { + "@id": "bts:Secondarycarcinoma" + }, + { + "@id": "bts:Dermalnevus" + }, + { + "@id": "bts:Infiltratingductandcribriformcarcinoma" + }, + { + "@id": "bts:Eosinophiladenocarcinoma" + }, + { + "@id": "bts:Chronicmyeloproliferativedisorder" + }, + { + "@id": "bts:Malignantmelanomaregressing" + }, + { + "@id": "bts:Osteoblastomamalignant" + }, + { + "@id": "bts:Papillotubularadenocarcinoma" + }, + { + "@id": "bts:CarcinomametastaticNOS" + }, + { + "@id": "bts:Sclerosinghemangioma" + }, + { + "@id": "bts:LymphocyticleukemiaNOS" + }, + { + "@id": "bts:PrecursorcelllymphoblasticleukemiaNOS" + }, + { + "@id": "bts:PapillarycarcinomaNOS" + }, + { + "@id": "bts:Bronchio-alveolarcarcinomamucinous" + }, + { + "@id": "bts:CarcinomainapolypNOS" + }, + { + "@id": "bts:AcutemyeloidleukemiaMLL" + }, + { + "@id": "bts:Tubulocysticrenalcellcarcinoma" + }, + { + "@id": "bts:MelanocytomaNOS" + }, + { + "@id": "bts:ChronicmyelogenousleukemiaPhiladelphiachromosome(Ph1)positive" + }, + { + "@id": "bts:Ewingsarcoma" + }, + { + "@id": "bts:GliomaNOS" + }, + { + "@id": "bts:Bronchial-associatedlymphoidtissuelymphoma" + }, + { + "@id": "bts:Papillotubularadenoma" + }, + { + "@id": "bts:Papillomaofbladder" + }, + { + "@id": "bts:Bronchio-alveolarcarcinomamixedmucinousandnon-mucinous" + }, + { + "@id": "bts:Carcinomainpleomorphicadenoma" + }, + { + "@id": "bts:Chondrosarcomagrade2/3" + }, + { + "@id": "bts:Neoplasmsecondary" + }, + { + "@id": "bts:Rhabdomyosarcomawithganglionicdifferentiation" + }, + { + "@id": "bts:Chroniclymphocyticleukemia" + }, + { + "@id": "bts:Liposarcomawelldifferentiated" + }, + { + "@id": "bts:Undifferentiatedpleomorphicsarcoma" + }, + { + "@id": "bts:Secretorycarcinomaofbreast" + }, + { + "@id": "bts:Lobularcarcinomanoninfiltrating" + }, + { + "@id": "bts:Mixedadenocarcinomaandsquamouscellcarcinoma" + }, + { + "@id": "bts:Melanoticneurofibroma" + }, + { + "@id": "bts:ChronicgranulocyticleukemiaPhiladelphiachromosome(Ph1)positive" + }, + { + "@id": "bts:Hepatocellularadenoma" + }, + { + "@id": "bts:BurkittlymphomaNOS(Includesallvariants)" + }, + { + "@id": "bts:ParagangliomaNOS" + }, + { + "@id": "bts:DiffuselargeB-celllymphomaNOS" + }, + { + "@id": "bts:NevusNOS" + }, + { + "@id": "bts:Hepatoidcarcinoma" + }, + { + "@id": "bts:MixedtumormalignantNOS" + }, + { + "@id": "bts:Rhabdoidsarcoma" + }, + { + "@id": "bts:Tubulolobularcarcinoma" + }, + { + "@id": "bts:Papillomatosisglandular" + }, + { + "@id": "bts:Bronchialadenomacarcinoid" + }, + { + "@id": "bts:Tumorembolus" + }, + { + "@id": "bts:DuctcarcinomaNOS" + }, + { + "@id": "bts:RhabdomyosarcomaNOS" + }, + { + "@id": "bts:LobularcarcinomaNOS" + }, + { + "@id": "bts:Bronchialadenomacylindroid" + }, + { + "@id": "bts:EpidermoidcarcinomaNOS" + }, + { + "@id": "bts:Papillaryglioneuronaltumor" + }, + { + "@id": "bts:DuctalcarcinomainsituNOS" + }, + { + "@id": "bts:Unclassifiedtumormalignantuncertainwhetherprimaryormetastatic" + }, + { + "@id": "bts:Glioblastoma" + }, + { + "@id": "bts:Papillaryandfollicularcarcinoma" + }, + { + "@id": "bts:DuctalcarcinomaNOS" + }, + { + "@id": "bts:Tumorbenign" + }, + { + "@id": "bts:Pagetdiseasemammary" + }, + { + "@id": "bts:Diffuseastrocytomalowgrade" + }, + { + "@id": "bts:Ductcellcarcinoma" + }, + { + "@id": "bts:Preleukemicsyndrome" + }, + { + "@id": "bts:Carcinomadiffusetype" + }, + { + "@id": "bts:Neurosarcoma" + }, + { + "@id": "bts:PapillomatosisNOS" + }, + { + "@id": "bts:Therapyrelatedmyeloidneoplasm" + }, + { + "@id": "bts:Renalcarcinomacollectingducttype" + }, + { + "@id": "bts:NeurofibromaNOS" + }, + { + "@id": "bts:Meningiomaanaplastic" + }, + { + "@id": "bts:CementomaNOS" + }, + { + "@id": "bts:DermatofibromaNOS" + }, + { + "@id": "bts:AstrocytomaNOS" + }, + { + "@id": "bts:Livercelladenoma" + }, + { + "@id": "bts:TubulovillousadenomaNOS" + }, + { + "@id": "bts:MelanomaNOS" + }, + { + "@id": "bts:PapillomaNOS" + }, + { + "@id": "bts:Esophagealglandulardysplasia(intraepithelialneoplasia)highgrade" + }, + { + "@id": "bts:Tumorcellsmalignant" + }, + { + "@id": "bts:MalignantlymphomadiffuseNOS" + }, + { + "@id": "bts:Renalcellcarcinomachromophobetype" + }, + { + "@id": "bts:Tubularcarcinoid" + }, + { + "@id": "bts:Nonpigmentednevus" + }, + { + "@id": "bts:Rodentulcer" + }, + { + "@id": "bts:HodgkindiseaseNOS" + }, + { + "@id": "bts:Acinarcellcarcinoma" + }, + { + "@id": "bts:Papillaryadenofibroma" + }, + { + "@id": "bts:Oatcellcarcinoma" + }, + { + "@id": "bts:Adenocarcinomainadenomatouspolyp" + }, + { + "@id": "bts:SpindlecellcarcinomaNOS" + }, + { + "@id": "bts:Adenocarcinomainpolypoidadenoma" + }, + { + "@id": "bts:Papillaryserousadenocarcinoma" + }, + { + "@id": "bts:SplenicdiffuseredpulpsmallB-celllymphoma" + }, + { + "@id": "bts:ChondromaNOS" + }, + { + "@id": "bts:Bileductadenoma" + }, + { + "@id": "bts:Adenocarcinomainvillousadenoma" + }, + { + "@id": "bts:SpindlecellmelanomaNOS" + }, + { + "@id": "bts:ClassicalHodgkinlymphomamixedcellularityNOS" + }, + { + "@id": "bts:Combinedsmallcell-largecarcinoma" + }, + { + "@id": "bts:Eosinophilcarcinoma" + }, + { + "@id": "bts:PancreaticendocrinetumorNOS" + }, + { + "@id": "bts:AdenocarcinomaNOS" + }, + { + "@id": "bts:SarcomaNOS" + }, + { + "@id": "bts:ChronicmyelocyticleukemiaNOS" + }, + { + "@id": "bts:Adenocarcinomainsitunon-mucinous" + }, + { + "@id": "bts:ChronicleukemiaNOS" + }, + { + "@id": "bts:Pro-TALL" + }, + { + "@id": "bts:Esophagealglandulardysplasia(intraepithelialneoplasia)lowgrade" + }, + { + "@id": "bts:Lymphoblastoma" + }, + { + "@id": "bts:Mixedmedullary-papillarycarcinoma" + }, + { + "@id": "bts:ClassicalHodgkinlymphomanodularsclerosisNOS" + }, + { + "@id": "bts:OsteoblastomaNOS" + }, + { + "@id": "bts:CerebellarsarcomaNOS" + }, + { + "@id": "bts:Paragangliomabenign" + }, + { + "@id": "bts:Intraductaltubular-papillaryneoplasmlowgrade" + }, + { + "@id": "bts:Familialadenomatouspolyposis" + }, + { + "@id": "bts:Mixedsquamouscellandglandularpapilloma" + }, + { + "@id": "bts:IntraductalcarcinomaNOS" + }, + { + "@id": "bts:Transitionalcarcinoma" + }, + { + "@id": "bts:Gastrinomamalignant" + }, + { + "@id": "bts:Melanocytomaeyeball" + }, + { + "@id": "bts:Mixedmedullary-follicularcarcinoma" + }, + { + "@id": "bts:ChronicmyelogenousleukemiaBCR-ABLpositive" + }, + { + "@id": "bts:Basophilcarcinoma" + }, + { + "@id": "bts:NeuroepitheliomaNOS" + }, + { + "@id": "bts:Adenocarcinomapancreatobiliarytype" + }, + { + "@id": "bts:PrecancerousmelanosisNOS" + }, + { + "@id": "bts:Undifferentiatedroundcellsarcoma" + }, + { + "@id": "bts:MalignantlymphomalargecellNOS" + }, + { + "@id": "bts:Tubulo-papillaryadenoma" + }, + { + "@id": "bts:ClassicalHodgkinlymphomalymphocytedepletiondiffusefibrosis" + }, + { + "@id": "bts:Cerebellarliponeurocytoma" + }, + { + "@id": "bts:Pulmonaryblastoma" + }, + { + "@id": "bts:Burkitt-likelymphoma" + }, + { + "@id": "bts:GangliogliomaNOS" + }, + { + "@id": "bts:T-celllymphomaNOS" + }, + { + "@id": "bts:Papillarytumorofthepinealregion" + }, + { + "@id": "bts:IntraductalpapillaryadenocarcinomaNOS" + }, + { + "@id": "bts:MalignantlymphomaNOS" + }, + { + "@id": "bts:Hepatoidadenocarcinoma" + }, + { + "@id": "bts:PapillaryadenomaNOS" + }, + { + "@id": "bts:Carcinomainsituinadenomatouspolyp" + }, + { + "@id": "bts:Eosinophilicgranuloma" + }, + { + "@id": "bts:Medullaryadenocarcinoma" + }, + { + "@id": "bts:Malignantlymphomamixedcelltypenodular" + }, + { + "@id": "bts:IntraductalcarcinomanoninfiltratingNOS" + }, + { + "@id": "bts:Interstitialcelltumormalignant" + }, + { + "@id": "bts:LymphomaNOS" + }, + { + "@id": "bts:Unclassifiedtumorborderlinemalignancy" + }, + { + "@id": "bts:Adenocarcinomaintubularadenoma" + }, + { + "@id": "bts:Intraductalpapillarycarcinoma" + }, + { + "@id": "bts:MyelocyticleukemiaNOS" + }, + { + "@id": "bts:TumorcellsNOS" + }, + { + "@id": "bts:LiposarcomaNOS" + }, + { + "@id": "bts:Interstitialcelltumorbenign" + }, + { + "@id": "bts:Neoplasmmetastatic" + }, + { + "@id": "bts:Chronicneutrophilicleukemia" + }, + { + "@id": "bts:Bronchiolo-alveolarcarcinomagobletcelltype" + }, + { + "@id": "bts:Papillaryadenocarcinomafollicularvariant" + }, + { + "@id": "bts:Hepatocarcinoma" + }, + { + "@id": "bts:Undifferentiateduterinesarcoma" + }, + { + "@id": "bts:Renalcellcarcinomaunclassified" + }, + { + "@id": "bts:Papillaryepidermoidcarcinoma" + }, + { + "@id": "bts:PigmentednevusNOS" + }, + { + "@id": "bts:MyeloidleukemiaNOS" + }, + { + "@id": "bts:Esophagealsquamousintraepithelialneoplasia(dysplasia)highgrade" + }, + { + "@id": "bts:MalignantlymphomalargeB-cellNOS" + }, + { + "@id": "bts:Non-lymphocyticleukemiaNOS" + }, + { + "@id": "bts:Basalcelladenocarcinoma" + }, + { + "@id": "bts:AdultT-celllymphoma/leukemia" + }, + { + "@id": "bts:Mixedpancreaticendocrineandexocrinetumormalignant" + }, + { + "@id": "bts:EpendymomaNOS" + }, + { + "@id": "bts:PeripheralT-celllymphomaNOS" + }, + { + "@id": "bts:Pulmonaryadenomatosis" + }, + { + "@id": "bts:Pleomorphiclobularcarcinoma" + }, + { + "@id": "bts:Pagetdiseaseofbreast" + }, + { + "@id": "bts:HodgkinparagranulomaNOS" + }, + { + "@id": "bts:MalignantmelanomaNOS" + }, + { + "@id": "bts:Papillarytransitionalcellcarcinoma" + }, + { + "@id": "bts:Acutelymphocyticleukemia" + }, + { + "@id": "bts:Seroussurfacepapillarycarcinoma" + }, + { + "@id": "bts:Basalcelltumor" + }, + { + "@id": "bts:ChronicmyelomonocyticleukemiaNOS" + }, + { + "@id": "bts:LymphaticleukemicNOS" + }, + { + "@id": "bts:TeratomaNOS" + }, + { + "@id": "bts:Malignantlymphomamixedcelltypefollicular" + }, + { + "@id": "bts:Bronchiolaradenocarcinoma" + }, + { + "@id": "bts:Basophiladenocarcinoma" + }, + { + "@id": "bts:Non-HodgkinlymphomaNOS" + }, + { + "@id": "bts:Haemangioblastoma" + }, + { + "@id": "bts:Intraductaltubular-papillaryneoplasmhighgrade" + }, + { + "@id": "bts:ChronicmyeloproliferativediseaseNOS" + }, + { + "@id": "bts:Rhabdoidmeningioma" + }, + { + "@id": "bts:RhabdoidtumorNOS" + }, + { + "@id": "bts:Carcinomaintestinaltype" + }, + { + "@id": "bts:ClassicalHodgkinlymphomalymphocytedepletionNOS" + }, + { + "@id": "bts:ChronicmyeloidleukemiaNOS" + }, + { + "@id": "bts:Melanoticmedulloblastoma" + }, + { + "@id": "bts:Melanoticneuroectodermaltumor" + }, + { + "@id": "bts:LobularcarcinomainsituNOS" + }, + { + "@id": "bts:Mixedsmallcellcarcinoma" + }, + { + "@id": "bts:Intradermalnevus" + }, + { + "@id": "bts:Bronchiolo-alveolarcarcinomaClaracell" + }, + { + "@id": "bts:Papillarysquamouscellcarcinomainsitu" + }, + { + "@id": "bts:Smallcellneuroendocrinecarcinoma" + }, + { + "@id": "bts:Malignantmelanomainprecancerousmelanosis" + }, + { + "@id": "bts:CarcinomaanaplasticNOS" + }, + { + "@id": "bts:Dysplasticnevus" + }, + { + "@id": "bts:Liposarcomadifferentiated" + }, + { + "@id": "bts:Combinedsmallcell-squamouscellcarcinoma" + }, + { + "@id": "bts:Acutelymphaticleukemia" + }, + { + "@id": "bts:Gliomamalignant" + }, + { + "@id": "bts:AdenocarcinomainsituNOS" + }, + { + "@id": "bts:Mucosal-associatedlymphoidtissuelymphoma" + }, + { + "@id": "bts:Spleniclymphomawithvillouslymphocytes" + }, + { + "@id": "bts:LargecellcarcinomaNOS" + }, + { + "@id": "bts:MicropapillarycarcinomaNOS" + }, + { + "@id": "bts:Undifferentiatedspindlecellsarcoma" + }, + { + "@id": "bts:IntraepidermalsquamouscellcarcinomaBowentype" + }, + { + "@id": 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"rdfs:label": "CancerAssociatedGeneMutations", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "schema:rangeIncludes": [ + { + "@id": "bts:PMS2mutation" + }, + { + "@id": "bts:POT1mutation" + }, + { + "@id": "bts:TP53mutation" + }, + { + "@id": "bts:H3K27Mmutation" + }, + { + "@id": "bts:SMARCA4mutation" + }, + { + "@id": "bts:SDHDmutation" + }, + { + "@id": "bts:BRCA1mutation" + }, + { + "@id": "bts:CHKmutation" + }, + { + "@id": "bts:RB1mutation" + }, + { + "@id": "bts:H3G34R/Vmutation" + }, + { + "@id": "bts:SDHCmutation" + }, + { + "@id": "bts:SDHBmutation" + }, + { + "@id": "bts:TSC2mutation" + }, + { + "@id": "bts:NotReported" + }, + { + "@id": "bts:HOXB13mutation" + }, + { + "@id": "bts:NF1mutation" + }, + { + "@id": "bts:VHLmutation" + }, + { + "@id": "bts:BAP1mutation" + }, + { + "@id": "bts:SETD2mutation" + }, + { + "@id": "bts:BRCA1and2mutation" + }, + { + "@id": "bts:Unknown" + }, + { + "@id": 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+ }, + { + "@id": "bts:ATRXmutation" + }, + { + "@id": "bts:KRASmutation" + }, + { + "@id": "bts:KITmutation" + }, + { + "@id": "bts:PolEmutation" + }, + { + "@id": "bts:TSC1mutation" + }, + { + "@id": "bts:BLMmutation" + }, + { + "@id": "bts:ATMmutation" + }, + { + "@id": "bts:ACVR1mutation" + }, + { + "@id": "bts:FLCNmutation" + }, + { + "@id": "bts:MEN1mutation" + }, + { + "@id": "bts:TMEM127mutation" + }, + { + "@id": "bts:BRAFmutation" + }, + { + "@id": "bts:ROS1mutation" + }, + { + "@id": "bts:SMAD4mutation" + }, + { + "@id": "bts:ALKmutation" + }, + { + "@id": "bts:BMPR1Amutation" + }, + { + "@id": "bts:APCmutation" + }, + { + "@id": "bts:BRCA2mutation" + }, + { + "@id": "bts:SMARCB1mutation" + }, + { + "@id": "bts:CDKN2Amutation" + }, + { + "@id": "bts:RAD51Cmutation" + }, + { + "@id": "bts:P14ARFmutation" + } + ], + "sms:displayName": "CancerAssociatedGeneMutations", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PMS2mutation", + "@type": 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"sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:H3K27Mmutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "H3K27Mmutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "H3K27M mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SMARCA4mutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SMARCA4mutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SMARCA4 mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SDHDmutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SDHDmutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SDHD mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BRCA1mutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BRCA1mutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "BRCA1 mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CHKmutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CHKmutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CHK mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:RB1mutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": 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}, + { + "@id": "bts:SDHBmutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SDHBmutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "SDHB mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:TSC2mutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "TSC2mutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "TSC2 mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:HOXB13mutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "HOXB13mutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "HOXB13 mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NF1mutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NF1mutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NF1 mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VHLmutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VHLmutation", + "rdfs:subClassOf": [ + { + "@id": "bts:CancerAssociatedGeneMutations" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "VHL mutation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:BAP1mutation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "BAP1mutation", + "rdfs:subClassOf": [ + { + "@id": 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If not applicable please enter 'Not Applicable'", + "rdfs:label": "StartDaysfromIndex", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "StartDaysfromIndex", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Ecigvapetimesperday", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Ecigvapetimesperday", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Ecigvapetimesperday", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:FamilyMemberVitalStatusIndicator", + "@type": "rdfs:Class", + "rdfs:comment": "The response indicates whether the family member of the patient with a history of cancer is alive. 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}, + "sms:displayName": "Patch", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Patch(progesterone)", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Patch(progesterone)", + "rdfs:subClassOf": [ + { + "@id": "bts:TypeContraceptiveUse" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Patch (progesterone)", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Vaginalring", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Vaginalring", + "rdfs:subClassOf": [ + { + "@id": "bts:TypeContraceptiveUse" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Vaginal ring", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Vaginalring(estrogen/progesterone)", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Vaginalring(estrogen/progesterone)", + 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(progesterone)", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Bilateraltuballigation", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Bilateraltuballigation", + "rdfs:subClassOf": [ + { + "@id": "bts:TypeContraceptiveUse" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Bilateral tubal ligation", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Naturalfamilyplanning", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Naturalfamilyplanning", + "rdfs:subClassOf": [ + { + "@id": "bts:TypeContraceptiveUse" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Natural family planning", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Rhythm", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Rhythm", + "rdfs:subClassOf": [ + { + "@id": 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"sms:validationRules": [] + }, + { + "@id": "bts:Child", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Child", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Child", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:FraternalTwinSibling", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "FraternalTwinSibling", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Fraternal Twin Sibling", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Father", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Father", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Father", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NaturalParent", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "NaturalParent", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Natural Parent", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VitalStatusDead", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VitalStatusDead", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Vital Status Dead", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Nephew", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Nephew", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Nephew", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:HalfSibling", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "HalfSibling", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Half Sibling", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AdoptiveFather", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AdoptiveFather", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Adoptive Father", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PaternalGrandfather", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PaternalGrandfather", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Paternal Grandfather", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Spouse", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Spouse", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Spouse", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Grandparent", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Grandparent", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Grandparent", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Refused", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Refused", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Refused", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Granddaughter", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Granddaughter", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Granddaughter", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:Stepmother", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Stepmother", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Stepmother", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:PaternalHalfSibling", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "PaternalHalfSibling", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Paternal Half Sibling", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:AdoptiveSister", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "AdoptiveSister", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Adoptive Sister", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MaternalGrandmother", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MaternalGrandmother", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Maternal Grandmother", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:FirstCousin", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "FirstCousin", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "First Cousin", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:FosterSister", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "FosterSister", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Foster Sister", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:GreatGrandchild", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "GreatGrandchild", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Great Grandchild", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:VitalStatusAlive", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "VitalStatusAlive", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Vital Status Alive", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:HalfSister", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "HalfSister", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Half Sister", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:GrandNiece", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "GrandNiece", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Grand Niece", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:MaternalGreatUncle", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "MaternalGreatUncle", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Maternal Great Uncle", + "sms:required": "sms:false", + "sms:validationRules": [] + } + ], + "@id": "http://schema.biothings.io/#0.1" } \ No newline at end of file