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Template development for Tapestri data #23

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anngvu opened this issue Feb 23, 2023 · 2 comments
Open

Template development for Tapestri data #23

anngvu opened this issue Feb 23, 2023 · 2 comments
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@anngvu
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anngvu commented Feb 23, 2023

We expect some Tapestri data. We'll first need to determine whether this means:

  • Reuse of an existing sequencing template with no changes, maybe just re-branding/making it available also under the "Tapestri" name.
  • Slight to moderate modifications of a current sequencing template (most likely).
  • Gather requirements for entirely new template from scratch.

We should look at some references for this method, come up with a prototype, and then discuss with the folks generating this data if the template looks appropriate.

@anngvu
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anngvu commented Mar 18, 2024

Reference: https://missionbio.com/products/platform/

So Tapestri is simply single-cell DNA-seq.

They have some example datasets here, e.g. https://portal.missionbio.com/datasets/4-cell-lines-AML-multiomics - h5 format.

@cconrad8
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cconrad8 commented Mar 18, 2024

Ok awesome thanks - adding this for notes too of the three files they include in their example datasets
image

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