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Add a repeat caller compatible with ONT data #364

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fellen31 opened this issue Sep 11, 2024 · 2 comments
Open

Add a repeat caller compatible with ONT data #364

fellen31 opened this issue Sep 11, 2024 · 2 comments
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Effort M Effort Medium enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
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0.5

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@fellen31
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Description of feature

Nallo needs a repeat caller that is compatible with ONT data, even if it's not perfect, and we can't annotate the output with Stranger (yet).
@fellen31 fellen31 added enhancement New feature or request Gain M Gain Medium Effort M Effort Medium Urgency M Urgency Medium labels Sep 11, 2024
@jemten
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jemten commented Sep 11, 2024

@J35P312 was working on a method of adding the number of motif repeats to the output of STRdust. Maybe something to check

@fellen31 fellen31 added Gain L Gain Large and removed Gain M Gain Medium labels Sep 30, 2024
@fellen31 fellen31 added this to the 0.5 milestone Nov 4, 2024
@fellen31
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fellen31 commented Nov 4, 2024 •
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In the meantime, let's:

so we have something.

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Effort M Effort Medium enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
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