Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Prepare fastq file of mapped reads for each pathogen after mapping against pathogen genomes #23

Open
LilyAnderssonLee opened this issue Jul 18, 2024 · 0 comments
Open

Prepare fastq file of mapped reads for each pathogen after mapping against pathogen genomes #23

LilyAnderssonLee opened this issue Jul 18, 2024 · 0 comments
Labels
enhancement New feature or request

Comments

@LilyAnderssonLee
Copy link
Collaborator

Description of feature

The BAM file with mapped reads from the pathogen screening step contains all pathogens. We need to prepare a separate FASTQ file for each pathogen.
@LilyAnderssonLee LilyAnderssonLee added the enhancement New feature or request label Jul 18, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@LilyAnderssonLee