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Add a module for spa typing to Nanopore track. Despite knowing that spa-typing is not the best method for tracking relatedness of strains, it is one of the parametres that needs to be reported to SmiNet when using long read sequencing and some would like to have it for historical reasons.
Add a module for spa typing to Nanopore track. Despite knowing that spa-typing is not the best method for tracking relatedness of strains, it is one of the parametres that needs to be reported to SmiNet when using long read sequencing and some would like to have it for historical reasons.
Suggested tool:
https://github.com/HCGB-IGTP/spaTyper
It is also available as nf-core module.
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