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Add spa-type analysis to Nanopore track #375

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Emkago opened this issue Nov 25, 2024 · 0 comments
Open

Add spa-type analysis to Nanopore track #375

Emkago opened this issue Nov 25, 2024 · 0 comments

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@Emkago
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Emkago commented Nov 25, 2024

Add a module for spa typing to Nanopore track. Despite knowing that spa-typing is not the best method for tracking relatedness of strains, it is one of the parametres that needs to be reported to SmiNet when using long read sequencing and some would like to have it for historical reasons.

Suggested tool:
https://github.com/HCGB-IGTP/spaTyper

It is also available as nf-core module.

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