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feat: rm noisy MUC6 from cnv VAF plot #42

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merged 1 commit into from
Jun 14, 2024
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feat: rm noisy MUC6 from cnv VAF plot #42

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20 changes: 20 additions & 0 deletions cnv/cnvkit_germline_blacklist_20240613.bed
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Original file line number Diff line number Diff line change
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chr1 1016500 1019000 Clorf159(UTR)
chr1 120611500 120612500 FANCD2
chr1 161436450 161436550 intergenic
chr2 113984200 113984300 PAX8(intron)
chr2 113993500 133994000 PAX8-AS1
chr3 10088000 10090000 FANCD2
chr3 75741000 75741500 intergenic
chr6 29910000 29914000 HLA-A
chr6 31236000 31240000 HLA-C
chr6 31321000 31326000 HLA-B
chr7 55234000 55235500 EGFR(intron)
chr7 57612500 57612700 intergenic
chr7 142458000 142461000 PRSS1(UTR)
chr7 151920000 151980000 KMTC2
chr9 68427500 68428000 FRL1JP
chr11 1015000 1019000 MUC6
chr17 16060000 16100000 NCOR1
chr17 45190000 45270000 CDC27
chr20 29633500 29634500 FRG1B(UTR)
chr22 42522000 42529000 CYP2D6
20 changes: 20 additions & 0 deletions cnv/cnvkit_germline_blacklist_20240613_hg38.bed
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Original file line number Diff line number Diff line change
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chr1 1081120 1083620 Clorf159(UTR)
chr1 120068886 120069886 FANCD2
chr1 161466660 161466760 intergenic
chr2 113226623 113226723 PAX8(intron)
chr2 113235923 133236428 PAX8-AS1
chr3 10046316 10048316 FANCD2
chr3 75691849 75692349 intergenic
chr6 29942223 29946223 HLA-A
chr6 31268223 31272223 HLA-C
chr6 31353223 31358223 HLA-B
chr7 55166307 55167807 EGFR(intron)
chr7 57552794 57552994 intergenic
chr7 142750149 142753149 PRSS1(UTR)
chr7 152222915 152282915 KMTC2
chr9 63831766 63832266 FRL1JP
chr11 1015000 1019000 MUC6
chr17 16156686 16196686 NCOR1
chr17 47112634 47192634 CDC27
chr20 30398824 30399824 FRG1B(UTR)
chr22 42125995 42132993 CYP2D6
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