test using existing release container #10
Workflow file for this run
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| name: CI Tests | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| shard: [1, 2, 3, 4, 5] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up JDK 11 | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: '11' | |
| distribution: 'adopt' | |
| - name: Setup Nextflow | |
| uses: nf-core/setup-nextflow@v1 | |
| with: | |
| version: "latest-edge" | |
| - name: Install nf-test | |
| run: | | |
| wget -qO- get.nf-test.com | bash -s 0.9.0-rc2 | |
| sudo mv nf-test /usr/local/bin/ | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Run Tests (Shard ${{ matrix.shard }}/${{ strategy.job-total }}) | |
| run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }} --container quay.io/genepi/umi-pipeline-nf:v0.2.1 |