Add unique ID check

genepi · Mar 2, 2024 · ae41f6c · ae41f6c
1 parent 1c3f69c
commit ae41f6c
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diff --git a/files/mutserve.zip b/files/mutserve.zip
diff --git a/modules/local/input_validation.nf b/modules/local/input_validation.nf
@@ -25,6 +25,7 @@ process INPUT_VALIDATION {
     
     java -jar /opt/mutserve/mutserve.jar stats \
         --input sample_statistics.txt \
+        --mapping sample_mappings.txt \
         --detection-limit ${params.detection_limit}  \
         --reference ${params.reference}  \
         --baseQ ${params.baseQ}\