Set fastqc threads

genepi · Mar 3, 2024 · 69a25cc · 69a25cc
1 parent e5f1111
commit 69a25cc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/local/calculate_statistics.nf b/modules/local/calculate_statistics.nf
@@ -41,7 +41,7 @@ process CALCULATE_STATISTICS {
     echo -e "${bam_file}\tMeanMapQuality\t\${mean_map_quality}" >> $output_name
     echo -e "${bam_file}\tRG\t\${readgroup}" >> $output_name
 
-    fastqc $bam_file -o .
+    fastqc --threads ${task.cpus} $bam_file -o .
 
     """
 }