From 4d1b08912154e0414e90cbe3082a340c2e8267b1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Sch=C3=B6nherr?= <seb.schoenherr@gmail.com>
Date: Thu, 18 Jul 2024 15:01:04 +0200
Subject: [PATCH] Prepare release v2.1.14

---
 README.md       | 6 ++++--
 cloudgene.yaml  | 2 +-
 nextflow.config | 2 +-
 3 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index 6a5f749..337ddd4 100644
--- a/README.md
+++ b/README.md
@@ -9,6 +9,8 @@ mtDNA-Server 2 is a Nextflow DSL2 pipeline to accurately detect heteroplasmic an
 
 ## Version History
 
+Release [v2.1.14](../../releases/tag/v2.1.14) - Load resource conf
+
 Release [v2.1.13](../../releases/tag/v2.1.13) - Update to latest Haplogrep3 
 
 Release [v2.1.12](../../releases/tag/v2.1.12) - Install Haplogrep3 tree directly.
@@ -40,12 +42,12 @@ To run mtDNA-Server 2 via Nextflow, please execute the following steps.
 
 2. Run the pipeline on our test dataset and select either Docker, Singluarity or Slurm. 
 ```
-nextflow run genepi/mtdna-server-2 -r v2.1.13 -profile test,<docker,singularity,slurm>
+nextflow run genepi/mtdna-server-2 -r v2.1.14 -profile test,<docker,singularity,slurm>
 ```
 ### Run Pipeline on own data
 To run mtDNA-Server 2 on your own data, create a [config file](tests/test_mitohpc_fusion.config) and run the following command:
 ```
-nextflow run genepi/mtdna-server-2 -r v2.1.13 -c <your-config-file> -profile docker
+nextflow run genepi/mtdna-server-2 -r v2.1.14 -c <your-config-file> -profile docker
 ```
 
 ### Parameters
diff --git a/cloudgene.yaml b/cloudgene.yaml
index b06ee55..8b22265 100644
--- a/cloudgene.yaml
+++ b/cloudgene.yaml
@@ -2,7 +2,7 @@ id: mtdna-server-2
 name: mtDNA-Server 2 - Mitochondrial Variant Calling 
 description: "A free web service to analyze your mtDNA NGS data. The service accepts data in BAM format aligned against the rCRS reference and returns homoplasmic and heteroplasmic variants in return. <br>Feel free to <a href=\"https://github.com/genepi/mtdna-server-2/?tab=readme-ov-file#contact\"><u>contact us</u></a> if you have issues running the pipeline.<br><br>No dataset at hand? No problem, download and extract our example dataset: <a href=\"https://mitoverse.i-med.ac.at/downloads/6-samples.zip\" class=\"btn btn-sm btn-secondary\" style=\"color:#ffffff !important\"><i class=\"fa fa-file\"></i> 6-samples.zip</a><br><br>"
 
-version: v2.1.13
+version: v2.1.14
 website: https://mitoverse.readthedocs.io/
 category:
 
diff --git a/nextflow.config b/nextflow.config
index 0c7517b..92e8798 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -1,6 +1,6 @@
 manifest {
     name                                  = 'mtDNA-Server 2'
-    version                               = 'v2.1.13'
+    version                               = 'v2.1.14'
     description                           = 'mtDNA Variant Calling'
     author                                = 'Sebastian Schönherr, Hansi Weissensteiner, Lukas Forer'
     homePage                              = 'https://github.com/genepi/mtdna-server-2'