Add mapping file and excluded samples to report #74
Workflow file for this run
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| name: CI Tests | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up JDK 11 | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: '11' | |
| distribution: 'adopt' | |
| - name: Install nextflow | |
| run: sudo bash; mkdir /opt/nextflow; cd /opt/nextflow; wget https://github.com/nextflow-io/nextflow/releases/download/v21.04.3/nextflow; chmod +x nextflow; | |
| - name: Add nextflow to path | |
| run: echo "/opt/nextflow" >> $GITHUB_PATH; | |
| - name: Install nf-test | |
| run: sudo bash; mkdir /opt/nf-test; cd /opt/nf-test; wget https://github.com/askimed/nf-test/releases/download/v0.8.2/nf-test-0.8.2.tar.gz; tar xvfz nf-test-*.tar.gz; chmod +x nf-test; | |
| - name: Add nf-test to path | |
| run: echo "/opt/nf-test" >> $GITHUB_PATH; | |
| - name: Build Docker | |
| run: docker build -t genepi/mtdna-server-2 . | |
| - name: Run Tests | |
| run: nf-test test |