From 73fd5e7f5298df15cc39ee5f01c298444bd79ade Mon Sep 17 00:00:00 2001 From: Lukas Forer Date: Tue, 17 Sep 2024 16:27:52 +0200 Subject: [PATCH] Update citations --- docs/pgs/getting-started.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/docs/pgs/getting-started.md b/docs/pgs/getting-started.md index 6c82092..bdfaffc 100644 --- a/docs/pgs/getting-started.md +++ b/docs/pgs/getting-started.md @@ -8,6 +8,13 @@ The graphical report includes all meta-data about the scores in a single place a An extensive quality control pipeline is executed automatically to detect and fix possible strand-flips and to filter out missing SNPs to prevent systematic errors (e.g. lower scores for individuals with missing or wrong aligned genetic data). +When incorporating the Polygenic Score Calculation extension in your research, please cite the following papers: + +> Forer L, Taliun D, LeFaive J, Smith AV, Boughton AP, Coassin S, Lamina C, Kronenberg F, Fuchsberger C, Schönherr S. Imputation Server PGS: an automated approach to calculate polygenic risk scores on imputation servers. Nucleic Acids Res. 2024 Jul 5;52(W1):W70-W77. doi: 10.1093/nar/gkae331. PMID: 38709879; PMCID: PMC11223871. + +> Samuel A. Lambert, Laurent Gil, Simon Jupp, Scott C. Ritchie, Yu Xu, Annalisa Buniello, Aoife McMahon, Gad Abraham, Michael Chapman, Helen Parkinson, John Danesh, Jacqueline A. L. MacArthur and Michael Inouye. The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation. Nature Genetics. doi: 10.1038/s41588-021-00783-5 (2021). + + ## Getting started To utilize the Polygenic Score Calculation extension on ImputationServer, you must first [register](https://imputationserver.sph.umich.edu/index.html#!pages/register) for an account. @@ -17,13 +24,6 @@ An activation email will be sent to the provided address. Once your email addres No dataset at hand? No problem, download our example dataset to test the PGS extension: [50-samples.zip](https://imputationserver.sph.umich.edu/resources/50-samples.zip). - -When incorporating the Polygenic Score Calculation extension in your research, please cite the following papers: - -> Das S, Forer L, Schönherr S, Sidore C, Locke AE, Kwong A, Vrieze S, Chew EY, Levy S, McGue M, Schlessinger D, Stambolian D, Loh PR, Iacono WG, Swaroop A, Scott LJ, Cucca F, Kronenberg F, Boehnke M, Abecasis GR, Fuchsberger C. [Next-generation genotype imputation service and methods](https://www.ncbi.nlm.nih.gov/pubmed/27571263). Nature Genetics 48, 1284–1287 (2016). - -> Samuel A. Lambert, Laurent Gil, Simon Jupp, Scott C. Ritchie, Yu Xu, Annalisa Buniello, Aoife McMahon, Gad Abraham, Michael Chapman, Helen Parkinson, John Danesh, Jacqueline A. L. MacArthur and Michael Inouye. The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation. Nature Genetics. doi: 10.1038/s41588-021-00783-5 (2021). - ## Setting up your first Polygenic Score Calculation job 1. [Log in](https://imputationserver.sph.umich.edu/index.html#!pages/login) with your credentials and navigate to the **Run** tab to initiate a new Polygenic Score Calculation job.